Wall clock time and date at job start Sat Apr 11 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.87033 * 2 1 4 4 C 1.54327 * 109.88088 * 238.99264 * 2 1 3 5 5 H 1.09002 * 110.72173 * 99.87038 * 4 2 1 6 6 N 1.46504 * 110.72122 * 336.59241 * 4 2 1 7 7 C 1.36930 * 119.99951 * 155.00361 * 6 4 2 8 8 H 1.08004 * 119.99921 * 0.02562 * 7 6 4 9 9 C 1.38811 * 120.00434 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00254 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99530 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47041 * 89.99933 * 11 9 7 13 13 H 1.48494 * 109.47030 * 210.00092 * 11 9 7 14 14 H 1.48503 * 109.47150 * 330.00219 * 11 9 7 15 15 C 1.55165 * 102.94078 * 218.23044 * 4 2 1 16 16 C 1.54915 * 101.57980 * 35.50135 * 15 4 2 17 17 N 1.47022 * 110.01360 * 121.10382 * 2 1 3 18 18 C 1.34777 * 125.64528 * 298.39309 * 17 2 1 19 19 O 1.21281 * 120.00173 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99667 * 180.02562 * 18 17 2 21 21 C 1.53000 * 109.46995 * 180.02562 * 20 18 17 22 22 C 1.52992 * 109.47081 * 180.02562 * 21 20 18 23 23 O 1.42903 * 109.47217 * 179.97438 * 22 21 20 24 24 C 1.42905 * 114.00043 * 179.97438 * 23 22 21 25 25 C 1.53176 * 109.54234 * 269.82546 * 24 23 22 26 26 C 1.53105 * 109.15520 * 183.24132 * 25 24 23 27 27 O 1.42902 * 109.48844 * 57.47259 * 26 25 24 28 28 C 1.42901 * 114.09618 * 298.89033 * 27 26 25 29 29 C 1.53092 * 109.41820 * 61.15918 * 28 27 26 30 30 H 1.09011 * 109.46546 * 181.01174 * 1 2 3 31 31 H 1.09000 * 109.47314 * 301.00463 * 1 2 3 32 32 H 1.08994 * 109.47340 * 61.01639 * 1 2 3 33 33 H 0.96996 * 119.99483 * 335.00584 * 6 4 2 34 34 H 0.97007 * 119.99319 * 180.02562 * 10 9 7 35 35 H 1.08995 * 111.00547 * 153.57467 * 15 4 2 36 36 H 1.09001 * 111.00003 * 277.43047 * 15 4 2 37 37 H 1.08997 * 110.36462 * 204.15099 * 16 15 4 38 38 H 1.08999 * 110.46102 * 81.87572 * 16 15 4 39 39 H 1.08997 * 109.46784 * 300.00107 * 20 18 17 40 40 H 1.09002 * 109.46871 * 60.00068 * 20 18 17 41 41 H 1.08998 * 109.47078 * 300.00086 * 21 20 18 42 42 H 1.08998 * 109.47053 * 60.00206 * 21 20 18 43 43 H 1.08998 * 109.47173 * 299.99952 * 22 21 20 44 44 H 1.09009 * 109.47265 * 59.99701 * 22 21 20 45 45 H 1.09001 * 109.53939 * 30.00108 * 24 23 22 46 46 H 1.08997 * 109.52413 * 303.06020 * 25 24 23 47 47 H 1.09001 * 109.52626 * 63.25154 * 25 24 23 48 48 H 1.09001 * 109.40705 * 297.49288 * 26 25 24 49 49 H 1.08995 * 109.49139 * 177.50903 * 26 25 24 50 50 H 1.08992 * 109.48307 * 301.16955 * 28 27 26 51 51 H 1.09000 * 109.48842 * 181.14424 * 28 27 26 52 52 H 1.09000 * 109.52741 * 182.48579 * 29 28 27 53 53 H 1.09005 * 109.57808 * 62.32288 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7476 -1.2439 5 1 2.3503 -0.0430 -2.0213 6 7 1.0486 -1.6856 -1.7478 7 6 1.0611 -2.0611 -3.0646 8 1 1.8131 -1.6660 -3.7316 9 6 0.1074 -2.9494 -3.5422 10 7 0.1198 -3.3106 -4.8078 11 14 -1.1928 -3.6332 -2.3884 12 1 -2.3800 -2.7411 -2.3961 13 1 -1.5907 -4.9907 -2.8399 14 1 -0.6414 -3.7113 -1.0118 15 6 3.2901 -1.5099 -0.6957 16 6 2.8197 -1.8770 0.7340 17 7 2.0332 -0.7136 1.1828 18 6 1.8126 -0.3620 2.4651 19 8 1.1474 0.6199 2.7188 20 6 2.3927 -1.1889 3.5836 21 6 1.9954 -0.5776 4.9287 22 6 2.5847 -1.4166 6.0642 23 8 2.2141 -0.8454 7.3205 24 6 2.7160 -1.5573 8.4534 25 6 1.7012 -2.6224 8.8800 26 6 2.2103 -3.3245 10.1417 27 8 2.4251 -2.3576 11.1717 28 6 3.4001 -1.3650 10.8460 29 6 2.9379 -0.5825 9.6140 30 1 -0.3633 -1.0276 0.0181 31 1 -0.3634 0.5294 0.8808 32 1 -0.3634 0.4979 -0.8989 33 1 0.3734 -2.0406 -1.1486 34 1 -0.5469 -3.9311 -5.1415 35 1 3.4889 -2.4059 -1.2836 36 1 4.1665 -0.8625 -0.6644 37 1 3.6780 -2.0299 1.3882 38 1 2.1962 -2.7708 0.7123 39 1 2.0083 -2.2068 3.5198 40 1 3.4792 -1.2047 3.4980 41 1 2.3793 0.4405 4.9927 42 1 0.9088 -0.5622 5.0140 43 1 2.2011 -2.4349 6.0004 44 1 3.6713 -1.4317 5.9786 45 1 3.6601 -2.0363 8.1940 46 1 0.7424 -2.1485 9.0901 47 1 1.5804 -3.3519 8.0792 48 1 3.1483 -3.8334 9.9196 49 1 1.4716 -4.0532 10.4755 50 1 4.3536 -1.8481 10.6331 51 1 3.5186 -0.6818 11.6870 52 1 3.7005 0.1455 9.3375 53 1 2.0050 -0.0653 9.8386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283921026.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:24 Heat of formation + Delta-G solvation = -141.271309 kcal Electronic energy + Delta-G solvation = -29963.424999 eV Core-core repulsion = 25834.336757 eV Total energy + Delta-G solvation = -4129.088242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -41.34889 -40.59173 -39.13681 -38.48991 -35.84301 -34.99762 -33.61175 -33.02909 -32.22574 -32.11559 -31.09867 -27.97997 -26.87001 -25.32009 -25.05400 -24.61517 -23.84690 -22.60129 -21.37036 -21.01007 -19.97122 -19.71482 -18.17018 -17.95613 -17.55840 -17.18754 -16.95274 -16.88267 -16.42165 -16.09952 -15.88470 -15.72668 -15.42531 -15.09460 -14.95869 -14.78405 -14.41003 -14.35094 -14.15227 -13.89585 -13.73954 -13.34873 -13.29751 -13.22133 -12.99435 -12.97931 -12.56673 -12.52089 -12.41991 -12.39400 -12.30719 -12.23434 -11.96385 -11.87712 -11.71696 -11.69396 -11.56551 -11.34602 -10.99122 -10.80720 -10.67484 -10.45303 -9.65359 -9.31387 -8.01617 -5.33876 1.34127 1.37730 1.43544 1.64455 1.94788 2.46452 2.60067 2.94987 3.27962 3.47378 3.55715 3.72978 3.73788 3.77089 3.91548 3.95131 3.99055 4.03293 4.12101 4.17734 4.24821 4.27900 4.31012 4.36564 4.44555 4.48037 4.51716 4.54150 4.58172 4.61559 4.69002 4.72885 4.75048 4.78994 4.82226 4.91960 5.02937 5.03504 5.07692 5.12336 5.17082 5.21042 5.23866 5.27173 5.37268 5.42428 5.80455 6.21529 6.22369 6.28427 6.60088 7.07843 7.17811 7.83706 8.01753 9.19628 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.001856 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.532731 B =15084.563549 C =15692.980958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.128 3.872 3 H 0.081 0.919 4 C 0.166 3.834 5 H 0.073 0.927 6 N -0.740 5.740 7 C -0.220 4.220 8 H 0.066 0.934 9 C -0.057 4.057 10 N -0.980 5.980 11 Si 0.940 3.060 12 H -0.286 1.286 13 H -0.296 1.296 14 H -0.256 1.256 15 C -0.149 4.149 16 C 0.105 3.895 17 N -0.612 5.612 18 C 0.520 3.480 19 O -0.585 6.585 20 C -0.123 4.123 21 C -0.097 4.097 22 C 0.065 3.935 23 O -0.404 6.404 24 C 0.084 3.916 25 C -0.178 4.178 26 C 0.062 3.938 27 O -0.406 6.406 28 C 0.063 3.937 29 C -0.154 4.154 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.365 0.635 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.069 0.931 51 H 0.110 0.890 52 H 0.088 0.912 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.943 0.543 30.835 33.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.024 3.976 3 H 0.099 0.901 4 C 0.056 3.944 5 H 0.091 0.909 6 N -0.384 5.384 7 C -0.351 4.351 8 H 0.084 0.916 9 C -0.249 4.249 10 N -0.631 5.631 11 Si 0.769 3.231 12 H -0.213 1.213 13 H -0.223 1.223 14 H -0.181 1.181 15 C -0.189 4.189 16 C -0.016 4.016 17 N -0.346 5.346 18 C 0.311 3.689 19 O -0.466 6.466 20 C -0.162 4.162 21 C -0.135 4.135 22 C -0.011 4.011 23 O -0.324 6.324 24 C 0.027 3.973 25 C -0.216 4.216 26 C -0.015 4.015 27 O -0.325 6.325 28 C -0.014 4.014 29 C -0.191 4.191 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.200 0.800 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.123 0.877 50 H 0.087 0.913 51 H 0.128 0.872 52 H 0.107 0.893 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.435 1.221 31.018 33.081 hybrid contribution -1.224 -0.595 -0.562 1.472 sum 10.211 0.627 30.456 32.128 Atomic orbital electron populations 1.21871 0.95908 1.00952 1.01669 1.21813 0.94110 0.96449 0.85238 0.90105 1.21385 0.89065 0.91075 0.92831 0.90859 1.42832 1.34891 1.53438 1.07218 1.19028 1.10464 1.19731 0.85904 0.91613 1.25320 1.01452 1.01078 0.97051 1.69852 1.38743 1.39407 1.15103 0.85642 0.80200 0.77504 0.79748 1.21251 1.22308 1.18057 1.23354 0.98419 1.01884 0.95253 1.22433 0.95550 0.87432 0.96234 1.48776 1.52098 1.28968 1.04718 1.20978 0.79878 0.85127 0.82946 1.90676 1.42057 1.30034 1.83810 1.21541 1.04084 1.00081 0.90510 1.21109 1.01083 0.99624 0.91695 1.22583 0.99535 0.96577 0.82425 1.87927 1.76437 1.53770 1.14272 1.22241 0.96466 0.92576 0.86042 1.22722 1.00115 0.99305 0.99434 1.22674 1.01603 0.90551 0.86635 1.87924 1.61538 1.41388 1.41622 1.22711 0.91145 0.90316 0.97180 1.22306 1.03095 0.99008 0.94727 0.93958 0.92724 0.91816 0.79962 0.93480 0.90496 0.88906 0.86979 0.92107 0.86855 0.85593 0.92058 0.92891 0.91914 0.91068 0.90264 0.92050 0.89692 0.91374 0.87719 0.91292 0.87193 0.89345 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 8.49 71.98 0.61 -4.43 16 2 C 0.13 4.00 3.42 45.34 0.15 4.15 16 3 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.17 5.62 3.48 46.18 0.16 5.78 16 5 H 0.07 2.57 8.09 -2.39 -0.02 2.55 16 6 N -0.74 -31.73 4.35 -317.30 -1.38 -33.11 16 7 C -0.22 -11.72 10.44 84.03 0.88 -10.84 16 8 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 9 C -0.06 -3.25 5.50 84.86 0.47 -2.79 16 10 N -0.98 -60.98 13.97 21.65 0.30 -60.67 16 11 Si 0.94 44.61 27.74 68.60 1.90 46.51 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 14 H -0.26 -10.96 6.52 99.48 0.65 -10.32 16 15 C -0.15 -3.92 6.77 31.99 0.22 -3.71 16 16 C 0.11 2.33 6.67 86.86 0.58 2.91 16 17 N -0.61 -16.30 3.07 -788.03 -2.42 -18.72 16 18 C 0.52 13.91 7.64 87.66 0.67 14.58 16 19 O -0.59 -20.57 15.04 -3.03 -0.05 -20.62 16 20 C -0.12 -2.03 4.71 29.85 0.14 -1.89 16 21 C -0.10 -1.86 4.87 30.59 0.15 -1.71 16 22 C 0.06 0.92 5.75 71.98 0.41 1.33 16 23 O -0.40 -7.55 10.00 -148.98 -1.49 -9.04 16 24 C 0.08 1.13 2.69 30.71 0.08 1.21 16 25 C -0.18 -2.26 5.77 30.69 0.18 -2.09 16 26 C 0.06 0.66 6.84 72.02 0.49 1.15 16 27 O -0.41 -6.02 10.77 -148.98 -1.60 -7.63 16 28 C 0.06 0.63 6.84 72.01 0.49 1.13 16 29 C -0.15 -1.93 5.79 30.68 0.18 -1.75 16 30 H 0.04 1.54 6.24 -2.38 -0.01 1.53 16 31 H 0.05 1.93 6.91 -2.39 -0.02 1.91 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.37 15.67 3.56 -92.71 -0.33 15.34 16 34 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 1.55 7.48 -2.39 -0.02 1.53 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.13 1.30 7.85 -2.39 -0.02 1.28 16 41 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 42 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 43 H 0.06 0.72 7.97 -2.39 -0.02 0.70 16 44 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 45 H 0.08 0.76 7.79 -2.39 -0.02 0.74 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.08 0.90 7.97 -2.39 -0.02 0.89 16 48 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 51 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -73.11 411.70 1.62 -71.49 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.48 Total: 28.74 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.86 Total: 3.05 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -3.50 Total: -112.50 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -3.14 Total: -37.29 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Total: -73.11 1.62 -71.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283921026.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.779 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds