Wall clock time and date at job start Sat Apr 11 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00142 * 2 1 4 4 C 1.53002 * 109.46967 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.54178 * 54.53739 * 4 3 2 6 6 O 1.21282 * 120.00331 * 234.14744 * 5 4 3 7 7 N 1.34783 * 120.00056 * 54.15159 * 5 4 3 8 8 C 1.46923 * 120.62578 * 5.14433 * 7 5 4 9 9 C 1.53201 * 108.77423 * 126.37208 * 8 7 5 10 10 C 1.53036 * 109.31465 * 54.62908 * 9 8 7 11 11 H 1.08997 * 109.46031 * 178.63117 * 10 9 8 12 12 N 1.46503 * 109.45598 * 58.65854 * 10 9 8 13 13 C 1.36937 * 120.00057 * 85.00134 * 12 10 9 14 14 H 1.08000 * 120.00093 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99910 * 179.97438 * 13 12 10 16 16 N 1.31612 * 119.99928 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99990 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47135 * 89.99704 * 17 15 13 19 19 H 1.48503 * 109.46841 * 209.99902 * 17 15 13 20 20 H 1.48500 * 109.47058 * 329.99648 * 17 15 13 21 21 C 1.53041 * 109.53822 * 298.63828 * 10 9 8 22 22 H 1.08992 * 109.49930 * 301.37734 * 21 10 9 23 23 C 1.53000 * 109.49528 * 181.31473 * 21 10 9 24 24 C 1.46916 * 120.63195 * 184.86445 * 7 5 4 25 25 C 1.53181 * 109.54350 * 294.27260 * 4 3 2 26 26 C 1.53088 * 109.16223 * 183.15130 * 25 4 3 27 27 O 1.42908 * 109.41523 * 57.60902 * 26 25 4 28 28 C 1.42904 * 114.09617 * 298.84203 * 27 26 25 29 29 C 1.53087 * 109.41756 * 61.15586 * 28 27 26 30 30 H 1.08997 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46323 * 299.99687 * 1 2 3 32 32 H 1.08995 * 109.46869 * 59.99258 * 1 2 3 33 33 H 1.09001 * 109.47381 * 300.00295 * 3 2 1 34 34 H 1.09004 * 109.47017 * 60.00414 * 3 2 1 35 35 H 1.08996 * 109.58666 * 246.15217 * 8 7 5 36 36 H 1.09001 * 109.59298 * 6.44440 * 8 7 5 37 37 H 1.09005 * 109.49698 * 174.58637 * 9 8 7 38 38 H 1.09002 * 109.49111 * 294.64758 * 9 8 7 39 39 H 0.97003 * 120.00102 * 264.99758 * 12 10 9 40 40 H 0.96996 * 120.00299 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.47461 * 60.00252 * 23 21 10 42 42 H 1.08999 * 109.47214 * 180.02562 * 23 21 10 43 43 H 1.09007 * 109.47253 * 299.99611 * 23 21 10 44 44 H 1.09005 * 109.58551 * 353.41770 * 24 7 5 45 45 H 1.09004 * 109.58946 * 113.84453 * 24 7 5 46 46 H 1.08993 * 109.52407 * 303.05854 * 25 4 3 47 47 H 1.09000 * 109.51960 * 63.24679 * 25 4 3 48 48 H 1.09000 * 109.48556 * 297.62611 * 26 25 4 49 49 H 1.09002 * 109.49195 * 177.59721 * 26 25 4 50 50 H 1.09002 * 109.47945 * 301.17595 * 28 27 26 51 51 H 1.08999 * 109.48618 * 181.14910 * 28 27 26 52 52 H 1.08995 * 109.52450 * 182.48491 * 29 28 27 53 53 H 1.09008 * 109.51992 * 62.29115 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 3.9725 0.3235 -1.1577 6 8 4.6812 -0.6411 -0.9622 7 7 3.5758 0.6255 -2.4099 8 6 2.8120 1.8516 -2.6779 9 6 3.5230 2.6448 -3.7790 10 6 3.7203 1.7471 -5.0025 11 1 4.2043 2.3162 -5.7962 12 7 2.4178 1.2670 -5.4707 13 6 1.6690 2.0372 -6.3199 14 1 2.0385 2.9988 -6.6443 15 6 0.4350 1.5821 -6.7639 16 7 -0.2848 2.3226 -7.5798 17 14 -0.2044 -0.0808 -6.2023 18 1 -0.9934 0.0876 -4.9556 19 1 -1.0690 -0.6618 -7.2607 20 1 0.9409 -0.9901 -5.9442 21 6 4.5983 0.5520 -4.6243 22 1 5.5588 0.9092 -4.2531 23 6 4.8220 -0.3275 -5.8561 24 6 3.9042 -0.2620 -3.5337 25 6 4.0000 0.5522 1.3150 26 6 5.5301 0.5076 1.3384 27 8 6.0465 1.8306 1.1794 28 6 5.6838 2.4541 -0.0542 29 6 4.1599 2.5769 -0.1336 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6887 1.8464 -0.8900 34 1 1.6887 1.8463 0.8901 35 1 1.8061 1.5909 -3.0070 36 1 2.7553 2.4526 -1.7703 37 1 2.9170 3.5079 -4.0548 38 1 4.4932 2.9829 -3.4149 39 1 2.0857 0.4035 -5.1791 40 1 -1.1469 2.0045 -7.8903 41 1 5.3167 0.2549 -6.6334 42 1 5.4470 -1.1787 -5.5862 43 1 3.8613 -0.6855 -6.2263 44 1 4.5702 -1.0541 -3.1912 45 1 2.9892 -0.6987 -3.9341 46 1 3.6402 1.1491 2.1530 47 1 3.6048 -0.4607 1.3918 48 1 5.8879 -0.1226 0.5242 49 1 5.8674 0.0977 2.2904 50 1 6.0435 1.8494 -0.8867 51 1 6.1317 3.4465 -0.1055 52 1 3.8790 3.0120 -1.0927 53 1 3.8032 3.2147 0.6752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319689147.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:39 Heat of formation + Delta-G solvation = -114.172179 kcal Electronic energy + Delta-G solvation = -33834.538157 eV Core-core repulsion = 29706.625021 eV Total energy + Delta-G solvation = -4127.913136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.47049 -40.14946 -38.78020 -38.68964 -36.22138 -35.41234 -34.26358 -33.14973 -32.03560 -31.49419 -29.33177 -27.89680 -27.02824 -26.76159 -25.18757 -24.60443 -23.92657 -23.03304 -22.66655 -20.46640 -19.93972 -19.49673 -17.98543 -17.67171 -17.18851 -17.06794 -16.85600 -16.72464 -16.50511 -16.32239 -16.08583 -15.66749 -15.39863 -15.32612 -15.09971 -14.84254 -14.49401 -14.46937 -14.40477 -13.80526 -13.47732 -13.37680 -13.32078 -13.07917 -13.01392 -12.96534 -12.87342 -12.67626 -12.48089 -12.41008 -12.28093 -12.06175 -11.96467 -11.87337 -11.69683 -11.63322 -11.43737 -11.22049 -10.95703 -10.81067 -10.42139 -10.28818 -9.62118 -9.23544 -7.99073 -5.29190 1.33869 1.35581 1.42076 1.58215 1.95241 2.47314 2.62841 2.94919 3.23576 3.33363 3.59416 3.63151 3.65147 3.74709 3.90313 3.90968 3.97545 4.02146 4.13455 4.27507 4.30090 4.32533 4.33882 4.41697 4.47879 4.49643 4.53049 4.57288 4.60533 4.62981 4.70681 4.77505 4.78681 4.79127 4.85818 4.90666 4.98081 5.01527 5.08422 5.10620 5.15533 5.19985 5.25681 5.27329 5.40782 5.60860 5.84139 6.10197 6.23298 6.25221 6.43524 7.11854 7.13783 7.89148 8.07028 9.22831 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.004445 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.120689 B = 6297.899846 C = 7120.200220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.053 3.947 4 C -0.075 4.075 5 C 0.533 3.467 6 O -0.574 6.574 7 N -0.598 5.598 8 C 0.098 3.902 9 C -0.144 4.144 10 C 0.177 3.823 11 H 0.052 0.948 12 N -0.742 5.742 13 C -0.210 4.210 14 H 0.065 0.935 15 C -0.055 4.055 16 N -0.982 5.982 17 Si 0.934 3.066 18 H -0.281 1.281 19 H -0.301 1.301 20 H -0.262 1.262 21 C -0.100 4.100 22 H 0.090 0.910 23 C -0.136 4.136 24 C 0.122 3.878 25 C -0.117 4.117 26 C 0.048 3.952 27 O -0.393 6.393 28 C 0.060 3.940 29 C -0.153 4.153 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.360 0.640 40 H 0.254 0.746 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.104 0.896 50 H 0.032 0.968 51 H 0.122 0.878 52 H 0.103 0.897 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 -0.006 19.464 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.024 4.024 4 C -0.078 4.078 5 C 0.323 3.677 6 O -0.454 6.454 7 N -0.329 5.329 8 C -0.024 4.024 9 C -0.184 4.184 10 C 0.069 3.931 11 H 0.070 0.930 12 N -0.386 5.386 13 C -0.341 4.341 14 H 0.083 0.917 15 C -0.247 4.247 16 N -0.634 5.634 17 Si 0.763 3.237 18 H -0.207 1.207 19 H -0.229 1.229 20 H -0.187 1.187 21 C -0.120 4.120 22 H 0.108 0.892 23 C -0.194 4.194 24 C -0.001 4.001 25 C -0.155 4.155 26 C -0.028 4.028 27 O -0.312 6.312 28 C -0.017 4.017 29 C -0.191 4.191 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.194 0.806 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.122 0.878 50 H 0.051 0.949 51 H 0.140 0.860 52 H 0.121 0.879 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.478 -0.429 19.561 21.741 hybrid contribution -1.536 -1.155 -0.725 2.054 sum 7.942 -1.584 18.836 20.503 Atomic orbital electron populations 1.22871 0.79588 1.03496 1.00862 1.87884 1.21192 1.28201 1.95606 1.23108 0.90552 0.85559 1.03136 1.20938 0.95594 0.97013 0.94240 1.20654 0.78488 0.84808 0.83780 1.90567 1.39204 1.31117 1.84508 1.48033 1.54476 1.23853 1.06554 1.22338 0.94640 0.85211 1.00166 1.22418 1.01072 0.98839 0.96096 1.20412 0.84983 0.93346 0.94342 0.93003 1.42824 1.19264 1.20335 1.56161 1.19018 0.97754 0.99667 1.17634 0.91703 1.25216 0.98002 1.00891 1.00561 1.69836 1.14196 1.39664 1.39710 0.85736 0.78436 0.82195 0.77315 1.20747 1.22854 1.18720 1.21581 0.99002 0.96181 0.95203 0.89170 1.21651 1.01275 0.99522 0.96904 1.21409 0.99306 0.93097 0.86328 1.21910 0.96779 1.01797 0.95005 1.22870 0.92972 0.83963 1.03009 1.87875 1.74724 1.29765 1.38851 1.22648 0.93808 0.99184 0.86047 1.22612 0.96780 0.93622 1.06049 0.89290 0.91733 0.94459 0.91126 0.89554 0.92974 0.86170 0.91137 0.89830 0.80580 0.93647 0.91934 0.91569 0.94130 0.89841 0.93564 0.88740 0.91355 0.92582 0.87842 0.94931 0.85984 0.87919 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -10.41 9.81 -148.98 -1.46 -11.87 16 3 C 0.05 1.07 4.42 71.98 0.32 1.38 16 4 C -0.07 -1.62 0.34 -52.81 -0.02 -1.63 16 5 C 0.53 15.28 4.74 87.66 0.42 15.70 16 6 O -0.57 -19.87 13.10 -3.04 -0.04 -19.91 16 7 N -0.60 -17.05 2.97 -819.73 -2.43 -19.49 16 8 C 0.10 2.60 3.80 86.37 0.33 2.93 16 9 C -0.14 -3.95 5.64 30.67 0.17 -3.78 16 10 C 0.18 5.88 2.53 45.02 0.11 6.00 16 11 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 12 N -0.74 -31.19 3.44 -322.81 -1.11 -32.30 16 13 C -0.21 -10.96 10.41 84.03 0.87 -10.08 16 14 H 0.07 3.70 8.06 -2.91 -0.02 3.68 16 15 C -0.06 -3.10 5.50 84.86 0.47 -2.64 16 16 N -0.98 -60.69 13.97 21.65 0.30 -60.39 16 17 Si 0.93 44.56 27.74 68.60 1.90 46.46 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 20 H -0.26 -11.62 6.52 99.48 0.65 -10.98 16 21 C -0.10 -2.86 2.66 -10.86 -0.03 -2.89 16 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 23 C -0.14 -3.88 9.05 71.98 0.65 -3.23 16 24 C 0.12 3.75 5.40 86.22 0.47 4.21 16 25 C -0.12 -2.50 4.45 30.68 0.14 -2.36 16 26 C 0.05 1.10 6.56 72.01 0.47 1.57 16 27 O -0.39 -8.92 10.77 -148.98 -1.60 -10.52 16 28 C 0.06 1.13 6.62 72.01 0.48 1.61 16 29 C -0.15 -2.52 4.61 30.68 0.14 -2.38 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.44 4.66 -2.39 -0.01 1.43 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.68 7.68 -2.39 -0.02 1.67 16 36 H 0.12 2.46 2.45 -2.39 -0.01 2.45 16 37 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.36 15.36 3.80 -92.71 -0.35 15.01 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.04 1.35 7.54 -2.38 -0.02 1.34 16 44 H 0.08 2.64 7.00 -2.38 -0.02 2.62 16 45 H 0.05 1.59 6.64 -2.39 -0.02 1.58 16 46 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.71 7.90 -2.39 -0.02 1.69 16 48 H 0.06 1.60 5.61 -2.39 -0.01 1.59 16 49 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.03 0.74 7.38 -2.39 -0.02 0.72 16 51 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.10 1.56 4.84 -2.39 -0.01 1.55 16 53 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -69.31 386.04 2.29 -67.02 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.50 Total: 34.77 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.24 Total: 6.21 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.24 Total: -112.17 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -3.10 Total: -42.30 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal Total: -69.31 2.29 -67.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319689147.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.148 kcal (2) G-P(sol) polarization free energy of solvation -69.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds