Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00241 * 2 1 4 4 C 1.54332 * 109.87955 * 238.90885 * 2 1 3 5 5 H 1.09004 * 110.71623 * 336.92589 * 4 2 1 6 6 N 1.46495 * 110.72074 * 100.02164 * 4 2 1 7 7 C 1.34776 * 120.00273 * 202.55602 * 6 4 2 8 8 O 1.21286 * 119.99869 * 0.02562 * 7 6 4 9 9 C 1.50693 * 120.00186 * 180.02562 * 7 6 4 10 10 C 1.53005 * 109.47193 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46899 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.46872 * 180.02562 * 11 10 9 13 13 C 1.42897 * 113.99919 * 180.02562 * 12 11 10 14 14 C 1.53207 * 109.54005 * 269.55613 * 13 12 11 15 15 C 1.53092 * 109.14859 * 183.15744 * 14 13 12 16 16 O 1.42905 * 109.42428 * 57.60656 * 15 14 13 17 17 C 1.42898 * 114.09851 * 298.83405 * 16 15 14 18 18 C 1.53097 * 109.41490 * 61.15689 * 17 16 15 19 19 C 1.55154 * 103.10086 * 218.48100 * 4 2 1 20 20 C 1.54903 * 101.58520 * 35.41062 * 19 4 2 21 21 N 1.47312 * 110.06775 * 121.17908 * 2 1 3 22 22 C 1.36943 * 125.61567 * 298.31774 * 21 2 1 23 23 H 1.08002 * 119.99469 * 359.80109 * 22 21 2 24 24 C 1.38810 * 120.00153 * 179.79631 * 22 21 2 25 25 N 1.31619 * 120.00081 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99820 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47016 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46814 * 120.00169 * 26 24 22 29 29 H 1.48494 * 109.46892 * 240.00374 * 26 24 22 30 30 H 1.09003 * 109.47341 * 181.09853 * 1 2 3 31 31 H 1.09005 * 109.46593 * 301.08789 * 1 2 3 32 32 H 1.08991 * 109.47148 * 61.08972 * 1 2 3 33 33 H 0.97000 * 119.99829 * 22.56850 * 6 4 2 34 34 H 1.09001 * 109.47286 * 60.00369 * 9 7 6 35 35 H 1.09005 * 109.47297 * 300.00128 * 9 7 6 36 36 H 1.08997 * 109.46697 * 60.00545 * 10 9 7 37 37 H 1.08996 * 109.47006 * 300.00057 * 10 9 7 38 38 H 1.08993 * 109.47435 * 60.00349 * 11 10 9 39 39 H 1.09005 * 109.47369 * 299.99679 * 11 10 9 40 40 H 1.08996 * 109.61572 * 29.77744 * 13 12 11 41 41 H 1.08999 * 109.53319 * 63.25262 * 14 13 12 42 42 H 1.08992 * 109.51748 * 303.05478 * 14 13 12 43 43 H 1.09002 * 109.48343 * 297.61643 * 15 14 13 44 44 H 1.08999 * 109.47546 * 177.59237 * 15 14 13 45 45 H 1.08995 * 109.48500 * 181.13987 * 17 16 15 46 46 H 1.09000 * 109.47974 * 301.16817 * 17 16 15 47 47 H 1.09003 * 109.51867 * 62.29966 * 18 17 16 48 48 H 1.08997 * 109.52106 * 182.48365 * 18 17 16 49 49 H 1.08999 * 111.00708 * 153.49053 * 19 4 2 50 50 H 1.09004 * 110.99893 * 277.33734 * 19 4 2 51 51 H 1.09001 * 110.36928 * 81.83429 * 20 19 4 52 52 H 1.09006 * 110.36928 * 204.04215 * 20 19 4 53 53 H 0.97006 * 119.99647 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2429 5 1 1.3038 -1.4436 -1.6202 6 7 2.4553 0.1961 -2.2876 7 6 2.5053 -0.2024 -3.5741 8 8 2.2183 -1.3438 -3.8670 9 6 2.9178 0.7702 -4.6487 10 6 2.8907 0.0694 -6.0086 11 6 3.3102 1.0568 -7.0995 12 8 3.2842 0.4025 -8.3697 13 6 3.6622 1.2410 -9.4633 14 6 2.4181 1.9267 -10.0371 15 6 2.8214 2.7603 -11.2562 16 8 3.4497 1.9157 -12.2227 17 6 4.6444 1.2848 -11.7575 18 6 4.3146 0.3917 -10.5585 19 6 3.2868 -1.5178 -0.6960 20 6 2.8161 -1.8832 0.7338 21 7 2.0355 -0.7164 1.1838 22 6 1.8131 -0.3595 2.4871 23 1 1.2245 0.5172 2.7139 24 6 2.3441 -1.1245 3.5165 25 7 3.0617 -2.1926 3.2400 26 14 2.0401 -0.6380 5.2943 27 1 1.2090 0.5920 5.3357 28 1 1.3298 -1.7385 5.9940 29 1 3.3391 -0.3811 5.9662 30 1 -0.3634 -1.0275 0.0197 31 1 -0.3633 0.5307 0.8801 32 1 -0.3633 0.4968 -0.8995 33 1 2.6846 1.1091 -2.0534 34 1 3.9264 1.1302 -4.4453 35 1 2.2267 1.6130 -4.6608 36 1 1.8820 -0.2902 -6.2118 37 1 3.5816 -0.7735 -5.9968 38 1 4.3189 1.4161 -6.8961 39 1 2.6195 1.9001 -7.1115 40 1 4.3683 1.9962 -9.1183 41 1 1.9786 2.5767 -9.2805 42 1 1.6915 1.1715 -10.3365 43 1 3.5172 3.5410 -10.9487 44 1 1.9337 3.2164 -11.6943 45 1 5.0700 0.6779 -12.5566 46 1 5.3641 2.0462 -11.4566 47 1 3.6262 -0.3945 -10.8685 48 1 5.2313 -0.0559 -10.1747 49 1 3.4810 -2.4144 -1.2846 50 1 4.1663 -0.8745 -0.6654 51 1 2.1880 -2.7737 0.7104 52 1 3.6743 -2.0423 1.3867 53 1 3.4331 -2.7270 3.9594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479725283.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -142.847837 kcal Electronic energy + Delta-G solvation = -29406.666369 eV Core-core repulsion = 25277.509764 eV Total energy + Delta-G solvation = -4129.156606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 4.41 seconds Orbital eigenvalues (eV) -41.02650 -40.56198 -39.24387 -38.50531 -35.59496 -34.91618 -33.82011 -33.00258 -32.09760 -32.05506 -30.55721 -28.23337 -26.26465 -25.78395 -25.09003 -24.56916 -22.97742 -22.07532 -21.53906 -21.35201 -20.90957 -18.72001 -18.27848 -17.83672 -17.32393 -17.23581 -16.94435 -16.79070 -16.55943 -16.06521 -15.81068 -15.74470 -15.44767 -15.12362 -14.89796 -14.71764 -14.35166 -14.09098 -13.97662 -13.90898 -13.56645 -13.23965 -13.23446 -13.01800 -12.93652 -12.75150 -12.61808 -12.49402 -12.38048 -12.23204 -12.20823 -12.07250 -11.94132 -11.85119 -11.66550 -11.58111 -11.44491 -11.32827 -10.85077 -10.74065 -10.65929 -10.42483 -9.97913 -8.90175 -7.74929 -5.20030 1.48256 1.49176 1.59095 1.70582 2.11435 2.51171 2.68204 2.97003 3.35883 3.55903 3.74947 3.76182 3.82404 3.86788 3.95728 3.98200 4.04457 4.05994 4.16553 4.21357 4.26495 4.36372 4.48011 4.49736 4.52491 4.56011 4.60605 4.62381 4.66553 4.69970 4.76424 4.76854 4.81480 4.84005 4.96186 5.05215 5.05500 5.10407 5.14315 5.15780 5.20520 5.31331 5.37950 5.50201 5.59420 5.65904 5.79838 6.23119 6.30134 6.31808 6.64411 7.11040 7.34279 7.78738 8.42504 9.27211 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.038964 B = 0.001491 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.446843 B =18771.176908 C =19061.491366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.057 0.943 4 C 0.151 3.849 5 H 0.074 0.926 6 N -0.705 5.705 7 C 0.508 3.492 8 O -0.591 6.591 9 C -0.124 4.124 10 C -0.100 4.100 11 C 0.065 3.935 12 O -0.406 6.406 13 C 0.084 3.916 14 C -0.177 4.177 15 C 0.061 3.939 16 O -0.406 6.406 17 C 0.063 3.937 18 C -0.155 4.155 19 C -0.138 4.138 20 C 0.157 3.843 21 N -0.614 5.614 22 C -0.225 4.225 23 H 0.087 0.913 24 C -0.071 4.071 25 N -0.952 5.952 26 Si 0.978 3.022 27 H -0.264 1.264 28 H -0.298 1.298 29 H -0.293 1.293 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.416 0.584 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.072 0.928 51 H -0.019 1.019 52 H 0.078 0.922 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 15.099 -28.184 32.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.045 3.955 5 H 0.092 0.908 6 N -0.357 5.357 7 C 0.296 3.704 8 O -0.471 6.471 9 C -0.163 4.163 10 C -0.138 4.138 11 C -0.011 4.011 12 O -0.326 6.326 13 C 0.027 3.973 14 C -0.215 4.215 15 C -0.015 4.015 16 O -0.325 6.325 17 C -0.013 4.013 18 C -0.193 4.193 19 C -0.178 4.178 20 C 0.031 3.969 21 N -0.339 5.339 22 C -0.354 4.354 23 H 0.105 0.895 24 C -0.263 4.263 25 N -0.602 5.602 26 Si 0.807 3.193 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.220 1.220 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.253 0.747 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.079 0.921 50 H 0.090 0.910 51 H -0.001 1.001 52 H 0.095 0.905 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.938 14.045 -28.391 31.811 hybrid contribution -0.096 -0.152 1.812 1.821 sum 2.842 13.893 -26.579 30.125 Atomic orbital electron populations 1.22121 0.96617 1.00580 1.01284 1.21271 0.93415 0.95207 0.85723 0.92560 1.21670 0.95971 0.91025 0.86857 0.90826 1.45895 1.68708 1.15210 1.05920 1.21396 0.76092 0.89000 0.83894 1.90708 1.50833 1.22615 1.82929 1.21548 1.06129 0.97919 0.90716 1.21134 1.02222 0.98257 0.92228 1.22604 1.01362 0.94995 0.82188 1.87932 1.89573 1.39402 1.15678 1.22242 0.95611 0.92705 0.86787 1.22720 0.98844 1.00639 0.99261 1.22694 0.98541 0.91764 0.88526 1.87922 1.41019 1.63652 1.39938 1.22699 0.86593 0.95649 0.96361 1.22316 1.01937 0.99410 0.95605 1.23181 0.97895 0.99878 0.96835 1.21658 0.95735 0.87734 0.91727 1.44815 1.59742 1.28460 1.00930 1.19456 1.26305 1.07916 0.81730 0.89533 1.25623 1.00941 0.97728 1.01984 1.70060 1.40557 1.18946 1.30653 0.84999 0.77009 0.77415 0.79848 1.18773 1.22527 1.21978 0.94885 0.93314 0.90926 0.74661 0.85747 0.85444 0.92593 0.92709 0.91329 0.91377 0.90265 0.89420 0.92020 0.91358 0.87610 0.87304 0.91309 0.91920 0.89552 0.92055 0.90957 1.00076 0.90451 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.15 71.98 0.66 -4.50 16 2 C 0.15 5.72 3.49 45.29 0.16 5.88 16 3 H 0.06 1.95 7.70 -2.39 -0.02 1.94 16 4 C 0.15 5.28 2.79 46.18 0.13 5.41 16 5 H 0.07 2.89 7.33 -2.39 -0.02 2.87 16 6 N -0.71 -17.83 5.19 -436.92 -2.27 -20.10 16 7 C 0.51 13.09 7.83 87.65 0.69 13.78 16 8 O -0.59 -21.47 15.67 -3.05 -0.05 -21.51 16 9 C -0.12 -1.79 5.70 29.85 0.17 -1.62 16 10 C -0.10 -1.86 4.87 30.60 0.15 -1.72 16 11 C 0.06 0.87 5.76 71.98 0.41 1.28 16 12 O -0.41 -7.53 10.00 -148.98 -1.49 -9.02 16 13 C 0.08 1.10 2.70 30.72 0.08 1.18 16 14 C -0.18 -2.09 5.77 30.69 0.18 -1.92 16 15 C 0.06 0.61 6.84 72.01 0.49 1.10 16 16 O -0.41 -5.92 10.77 -148.98 -1.60 -7.52 16 17 C 0.06 0.65 6.84 72.01 0.49 1.14 16 18 C -0.15 -1.98 5.79 30.69 0.18 -1.81 16 19 C -0.14 -5.49 6.77 31.98 0.22 -5.27 16 20 C 0.16 7.92 5.89 86.85 0.51 8.43 16 21 N -0.61 -30.48 3.14 -667.56 -2.10 -32.58 16 22 C -0.23 -12.14 9.91 84.03 0.83 -11.31 16 23 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 24 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 25 N -0.95 -56.75 10.09 21.65 0.22 -56.53 16 26 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.75 8.06 -2.38 -0.02 1.73 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.42 7.62 8.34 -92.71 -0.77 6.85 16 34 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 39 H 0.07 0.66 7.99 -2.38 -0.02 0.64 16 40 H 0.08 0.74 7.79 -2.39 -0.02 0.72 16 41 H 0.09 0.80 7.99 -2.39 -0.02 0.78 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 51 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 52 H 0.08 4.41 5.88 -2.38 -0.01 4.39 16 53 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -74.91 416.80 0.65 -74.26 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.10 Total: 19.32 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.81 Total: 6.58 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.14 Total: -109.21 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -3.14 Total: -38.06 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.91 0.65 -74.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479725283.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.588 kcal (2) G-P(sol) polarization free energy of solvation -74.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds