Wall clock time and date at job start Sat Apr 11 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.50222 * 2 1 4 4 C 1.53048 * 109.50091 * 239.90007 * 2 1 3 5 5 C 1.53032 * 109.54088 * 178.68199 * 4 2 1 6 6 C 1.53191 * 109.31120 * 61.36717 * 5 4 2 7 7 N 1.46930 * 108.77838 * 305.36195 * 6 5 4 8 8 C 1.34771 * 120.63623 * 233.63138 * 7 6 5 9 9 O 1.21277 * 120.00543 * 186.40752 * 8 7 6 10 10 C 1.50701 * 119.99838 * 6.40481 * 8 7 6 11 11 C 1.52998 * 109.47359 * 180.02562 * 10 8 7 12 12 O 1.42973 * 109.46671 * 294.99544 * 11 10 8 13 13 C 1.43087 * 113.76924 * 181.20460 * 12 11 10 14 14 C 1.53260 * 108.94368 * 57.97094 * 13 12 11 15 15 C 1.53254 * 108.84675 * 305.47754 * 14 13 12 16 16 O 1.42969 * 109.47184 * 175.00365 * 11 10 8 17 17 C 1.46929 * 118.73158 * 53.61029 * 7 6 5 18 18 H 1.08998 * 109.70754 * 66.24911 * 17 7 6 19 19 C 1.53003 * 109.58389 * 186.60680 * 17 7 6 20 20 C 1.52997 * 109.47433 * 65.83821 * 19 17 7 21 21 N 1.46498 * 109.47412 * 175.74376 * 20 19 17 22 22 C 1.36931 * 120.00067 * 180.02562 * 21 20 19 23 23 H 1.08005 * 120.00408 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99847 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00056 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99883 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46888 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47154 * 119.99757 * 26 24 22 29 29 H 1.48501 * 109.46568 * 239.99511 * 26 24 22 30 30 H 1.08993 * 109.47127 * 299.93667 * 1 2 3 31 31 H 1.09000 * 109.46756 * 59.93616 * 1 2 3 32 32 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.45594 * 298.70833 * 4 2 1 34 34 H 1.09001 * 109.45294 * 58.66534 * 4 2 1 35 35 H 1.08998 * 109.50331 * 181.31971 * 5 4 2 36 36 H 1.09004 * 109.50179 * 301.38521 * 5 4 2 37 37 H 1.08996 * 109.58899 * 65.15378 * 6 5 4 38 38 H 1.09007 * 109.58922 * 185.43604 * 6 5 4 39 39 H 1.09010 * 109.47302 * 299.99934 * 10 8 7 40 40 H 1.09001 * 109.47584 * 59.99505 * 10 8 7 41 41 H 1.08994 * 109.47259 * 54.99818 * 11 10 8 42 42 H 1.09005 * 109.56126 * 298.13708 * 13 12 11 43 43 H 1.08995 * 109.64803 * 177.86729 * 13 12 11 44 44 H 1.08999 * 109.57362 * 185.66922 * 14 13 12 45 45 H 1.09003 * 109.67515 * 65.35006 * 14 13 12 46 46 H 1.09001 * 109.56022 * 294.68307 * 15 14 13 47 47 H 1.08995 * 109.64866 * 174.41157 * 15 14 13 48 48 H 1.09005 * 109.47006 * 305.84110 * 19 17 7 49 49 H 1.08999 * 109.47465 * 185.84599 * 19 17 7 50 50 H 1.08998 * 109.47112 * 295.74495 * 20 19 17 51 51 H 1.08997 * 109.46800 * 55.74087 * 20 19 17 52 52 H 0.96998 * 119.99737 * 359.97438 * 21 20 19 53 53 H 0.97002 * 120.00020 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7235 -1.2481 5 6 3.5708 -0.6954 -1.2658 6 6 4.1052 -1.4267 -0.0304 7 7 3.5046 -0.8288 1.1699 8 6 4.2811 -0.3849 2.1781 9 8 3.7737 -0.0009 3.2105 10 6 5.7799 -0.3659 2.0226 11 6 6.4186 0.1779 3.3021 12 8 6.0395 1.5449 3.4800 13 6 6.6110 2.1555 4.6411 14 6 8.1382 2.0647 4.5502 15 6 8.5356 0.5993 4.3421 16 8 7.8418 0.0876 3.2000 17 6 2.0413 -0.7235 1.2498 18 1 1.6032 -1.7203 1.2998 19 6 1.6517 0.0713 2.4978 20 6 2.1346 1.5159 2.3540 21 7 1.6739 2.3014 3.5015 22 6 1.9871 3.6314 3.5909 23 1 2.5741 4.1013 2.8155 24 6 1.5510 4.3756 4.6786 25 7 0.8362 3.8028 5.6237 26 14 1.9776 6.1902 4.8001 27 1 2.7836 6.5894 3.6185 28 1 0.7277 6.9909 4.8407 29 1 2.7611 6.4325 6.0381 30 1 -0.3633 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6967 -1.7577 -1.2347 34 1 1.6582 -0.2251 -2.1388 35 1 3.9335 -1.1903 -2.1667 36 1 3.9159 0.3385 -1.2548 37 1 3.8376 -2.4818 -0.0860 38 1 5.1899 -1.3267 0.0128 39 1 6.1392 -1.3787 1.8397 40 1 6.0500 0.2726 1.1814 41 1 6.0776 -0.4078 4.1557 42 1 6.2670 1.6340 5.5344 43 1 6.3099 3.2018 4.6907 44 1 8.5817 2.4356 5.4743 45 1 8.4920 2.6620 3.7099 46 1 8.2645 0.0189 5.2240 47 1 9.6107 0.5310 4.1767 48 1 2.1140 -0.3807 3.3754 49 1 0.5677 0.0601 2.6120 50 1 3.2238 1.5327 2.3158 51 1 1.7322 1.9437 1.4357 52 1 1.1465 1.8795 4.1977 53 1 0.5311 4.3229 6.3836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488993178.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:15 Heat of formation + Delta-G solvation = -115.730323 kcal Electronic energy + Delta-G solvation = -32994.807369 eV Core-core repulsion = 28866.826667 eV Total energy + Delta-G solvation = -4127.980702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -41.97656 -40.79490 -38.62460 -36.86696 -36.64893 -35.17564 -34.15435 -33.87972 -32.55679 -31.34641 -29.66997 -27.48383 -26.94735 -26.60596 -25.27554 -24.16450 -23.61567 -22.21657 -22.13836 -20.97705 -19.78995 -19.12228 -18.46159 -17.87495 -17.52213 -16.96696 -16.89224 -16.60226 -16.43913 -15.85661 -15.75224 -15.71944 -15.53483 -15.08903 -14.85183 -14.66521 -14.29505 -14.24986 -14.24217 -13.99049 -13.70236 -13.40628 -13.19930 -13.02279 -12.91437 -12.86935 -12.53086 -12.44944 -12.37991 -12.20848 -12.11853 -12.06670 -12.02882 -11.92410 -11.66540 -11.55774 -11.32620 -11.14343 -10.98505 -10.80148 -10.67264 -9.79359 -9.40017 -8.81949 -7.91539 -5.16934 1.39869 1.42605 1.52794 1.74049 1.95153 2.55931 2.67805 2.70532 3.40369 3.57752 3.74734 3.76416 3.77617 3.83941 3.88333 3.93033 4.09300 4.14031 4.17863 4.21739 4.33663 4.37057 4.41847 4.42775 4.49956 4.60974 4.65354 4.66306 4.69666 4.73295 4.80577 4.83860 4.88266 4.91164 4.95207 4.97585 5.07517 5.08419 5.16454 5.29644 5.31366 5.39383 5.45507 5.54015 5.55352 5.62415 5.83850 5.87556 6.19531 6.31337 6.57891 7.35113 7.41644 8.17728 8.41493 9.33437 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006806 B = 0.005955 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4113.051934 B = 4700.973077 C = 8094.413614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.051 0.949 4 C -0.107 4.107 5 C -0.134 4.134 6 C 0.101 3.899 7 N -0.609 5.609 8 C 0.500 3.500 9 O -0.533 6.533 10 C -0.117 4.117 11 C 0.262 3.738 12 O -0.402 6.402 13 C 0.051 3.949 14 C -0.181 4.181 15 C 0.054 3.946 16 O -0.402 6.402 17 C 0.168 3.832 18 H 0.088 0.912 19 C -0.125 4.125 20 C 0.174 3.826 21 N -0.736 5.736 22 C -0.226 4.226 23 H 0.061 0.939 24 C -0.081 4.081 25 N -0.974 5.974 26 Si 0.970 3.030 27 H -0.270 1.270 28 H -0.289 1.289 29 H -0.291 1.291 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.147 0.853 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.129 0.871 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.026 0.974 51 H -0.006 1.006 52 H 0.367 0.633 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.131 -16.115 -14.182 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.069 0.931 4 C -0.145 4.145 5 C -0.172 4.172 6 C -0.020 4.020 7 N -0.343 5.343 8 C 0.288 3.712 9 O -0.410 6.410 10 C -0.157 4.157 11 C 0.166 3.834 12 O -0.323 6.323 13 C -0.026 4.026 14 C -0.219 4.219 15 C -0.022 4.022 16 O -0.323 6.323 17 C 0.065 3.935 18 H 0.106 0.894 19 C -0.163 4.163 20 C 0.048 3.952 21 N -0.377 5.377 22 C -0.358 4.358 23 H 0.079 0.921 24 C -0.272 4.272 25 N -0.626 5.626 26 Si 0.799 3.201 27 H -0.195 1.195 28 H -0.216 1.216 29 H -0.218 1.218 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.165 0.835 40 H 0.131 0.869 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.147 0.853 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.044 0.956 51 H 0.012 0.988 52 H 0.197 0.803 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.934 -15.752 -14.014 25.272 hybrid contribution -0.423 1.449 1.357 2.030 sum 13.511 -14.303 -12.657 23.395 Atomic orbital electron populations 1.21756 0.94291 1.02498 1.01384 1.21603 0.96355 0.99440 0.95200 0.93077 1.21561 0.95648 1.01173 0.96086 1.21935 0.95730 1.00908 0.98597 1.22082 0.99323 0.97940 0.82681 1.48094 1.05997 1.61303 1.18908 1.20603 0.89492 0.77228 0.83839 1.90860 1.74073 1.45894 1.30216 1.21528 0.91131 1.05452 0.97540 1.22885 0.79890 0.83086 0.97505 1.88220 1.71226 1.26873 1.45937 1.22667 0.93752 0.98696 0.87448 1.22745 0.95103 0.99027 1.04995 1.22889 0.98675 0.92372 0.88218 1.87982 1.18693 1.82354 1.43245 1.21157 0.79534 0.98667 0.94182 0.89393 1.22211 0.98694 0.95665 0.99714 1.20996 0.96484 0.90092 0.87636 1.42472 1.63666 1.07066 1.24513 1.19537 1.25287 0.87159 1.03825 0.92137 1.25504 1.02040 1.02463 0.97240 1.69850 1.43644 1.36565 1.12521 0.85104 0.77235 0.80360 0.77360 1.19514 1.21592 1.21770 0.94804 0.91751 0.90796 0.90021 0.91069 0.87695 0.93200 0.88851 0.87882 0.83524 0.86892 0.93546 0.93819 0.89888 0.87373 0.90263 0.92193 0.85314 0.89538 0.93897 0.95643 0.98813 0.80261 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.97 71.98 0.65 -2.82 16 2 C -0.11 -2.68 1.99 -10.71 -0.02 -2.70 16 3 H 0.05 1.65 5.93 -2.38 -0.01 1.64 16 4 C -0.11 -1.75 5.17 30.62 0.16 -1.59 16 5 C -0.13 -1.86 6.08 30.67 0.19 -1.68 16 6 C 0.10 1.44 6.34 86.36 0.55 1.99 16 7 N -0.61 -15.13 2.94 -795.02 -2.34 -17.46 16 8 C 0.50 15.63 6.17 87.66 0.54 16.17 16 9 O -0.53 -22.58 9.28 10.76 0.10 -22.48 16 10 C -0.12 -2.85 4.14 29.85 0.12 -2.73 16 11 C 0.26 7.91 2.80 71.98 0.20 8.11 16 12 O -0.40 -15.49 9.77 -120.75 -1.18 -16.67 16 13 C 0.05 1.69 6.96 72.07 0.50 2.19 16 14 C -0.18 -4.10 6.35 30.77 0.20 -3.91 16 15 C 0.05 1.09 6.96 72.07 0.50 1.59 16 16 O -0.40 -10.25 10.54 -126.22 -1.33 -11.58 16 17 C 0.17 4.69 2.66 44.98 0.12 4.81 16 18 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 19 C -0.13 -4.98 4.20 30.59 0.13 -4.85 16 20 C 0.17 8.45 4.94 86.38 0.43 8.87 16 21 N -0.74 -43.92 5.60 -343.46 -1.92 -45.85 16 22 C -0.23 -14.34 9.99 84.04 0.84 -13.50 16 23 H 0.06 3.80 7.83 -2.91 -0.02 3.78 16 24 C -0.08 -5.15 5.50 84.86 0.47 -4.68 16 25 N -0.97 -65.03 13.06 21.65 0.28 -64.75 16 26 Si 0.97 50.34 29.55 68.60 2.03 52.37 16 27 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 29 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 30 H 0.03 1.04 6.75 -2.39 -0.02 1.02 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 1.08 5.94 -2.38 -0.01 1.07 16 39 H 0.15 2.32 7.68 -2.38 -0.02 2.30 16 40 H 0.11 2.58 7.95 -2.39 -0.02 2.56 16 41 H 0.05 1.52 7.95 -2.39 -0.02 1.50 16 42 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.09 3.88 5.58 -30.75 -0.17 3.70 16 49 H 0.04 1.73 6.93 -2.39 -0.02 1.72 16 50 H 0.03 1.34 5.04 -2.39 -0.01 1.32 16 51 H -0.01 -0.28 5.97 -2.39 -0.01 -0.29 16 52 H 0.37 23.34 7.67 -92.71 -0.71 22.63 16 53 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -84.45 394.81 1.23 -83.22 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.03 Total: 37.92 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.56 Total: 5.29 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -3.98 Total: -128.06 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -2.41 Total: -50.73 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.03 Total: 52.37 kcal Total: -84.45 1.23 -83.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488993178.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.514 kcal (2) G-P(sol) polarization free energy of solvation -84.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds