Wall clock time and date at job start Sat Apr 11 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.49669 * 2 1 4 4 C 1.53034 * 109.49974 * 120.06450 * 2 1 3 5 5 C 1.53045 * 109.53915 * 181.34896 * 4 2 1 6 6 C 1.53196 * 109.31385 * 298.63913 * 5 4 2 7 7 N 1.46930 * 108.77437 * 54.63322 * 6 5 4 8 8 C 1.34770 * 120.63011 * 126.41345 * 7 6 5 9 9 O 1.21286 * 119.99967 * 174.26999 * 8 7 6 10 10 C 1.50699 * 120.00335 * 354.27910 * 8 7 6 11 11 C 1.52997 * 109.47415 * 179.97438 * 10 8 7 12 12 O 1.42965 * 109.47139 * 294.99795 * 11 10 8 13 13 C 1.43084 * 113.77180 * 181.20696 * 12 11 10 14 14 C 1.53262 * 108.94547 * 57.96682 * 13 12 11 15 15 C 1.53265 * 108.84239 * 305.47862 * 14 13 12 16 16 O 1.42963 * 109.47232 * 174.99583 * 11 10 8 17 17 C 1.46930 * 118.73678 * 306.39316 * 7 6 5 18 18 H 1.09002 * 109.58438 * 293.82051 * 17 7 6 19 19 C 1.53004 * 109.58553 * 173.39854 * 17 7 6 20 20 C 1.52996 * 109.46718 * 295.67637 * 19 17 7 21 21 N 1.46504 * 109.46894 * 173.28667 * 20 19 17 22 22 C 1.36934 * 120.00053 * 179.97438 * 21 20 19 23 23 H 1.08001 * 120.00010 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00231 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00064 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00355 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47014 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47411 * 119.99972 * 26 24 22 29 29 H 1.48497 * 109.46980 * 240.00257 * 26 24 22 30 30 H 1.09004 * 109.46976 * 299.99383 * 1 2 3 31 31 H 1.08998 * 109.47453 * 60.00048 * 1 2 3 32 32 H 1.09004 * 109.46945 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46577 * 301.37410 * 4 2 1 34 34 H 1.09000 * 109.45570 * 61.33260 * 4 2 1 35 35 H 1.09000 * 109.49443 * 58.58692 * 5 4 2 36 36 H 1.08994 * 109.50103 * 178.65549 * 5 4 2 37 37 H 1.08998 * 109.58780 * 174.42002 * 6 5 4 38 38 H 1.09001 * 109.58828 * 294.70579 * 6 5 4 39 39 H 1.09002 * 109.46453 * 299.99859 * 10 8 7 40 40 H 1.08995 * 109.47445 * 59.99055 * 10 8 7 41 41 H 1.08998 * 109.47037 * 54.99659 * 11 10 8 42 42 H 1.09002 * 109.55888 * 298.12807 * 13 12 11 43 43 H 1.08999 * 109.56116 * 177.80467 * 13 12 11 44 44 H 1.09001 * 109.58065 * 185.66930 * 14 13 12 45 45 H 1.09006 * 109.68004 * 65.34683 * 14 13 12 46 46 H 1.08996 * 109.56011 * 294.67943 * 15 14 13 47 47 H 1.09011 * 109.55817 * 174.36094 * 15 14 13 48 48 H 1.08999 * 109.47068 * 55.67084 * 19 17 7 49 49 H 1.08994 * 109.47354 * 175.67490 * 19 17 7 50 50 H 1.09004 * 109.47113 * 293.28086 * 20 19 17 51 51 H 1.08998 * 109.47342 * 53.28677 * 20 19 17 52 52 H 0.97001 * 120.00031 * 359.97438 * 21 20 19 53 53 H 0.96997 * 120.00093 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 3.5709 -0.6939 1.2665 6 6 4.1060 -1.4254 0.0314 7 7 3.5053 -0.8281 -1.1691 8 6 4.2818 -0.3850 -2.1776 9 8 3.7737 0.0100 -3.2056 10 6 5.7813 -0.3805 -2.0281 11 6 6.4198 0.1655 -3.3067 12 8 6.1507 -0.7256 -4.3918 13 6 6.7318 -0.3148 -5.6332 14 6 8.2483 -0.1844 -5.4536 15 6 8.5283 0.7582 -4.2780 16 8 7.8330 0.2793 -3.1228 17 6 2.0419 -0.7235 -1.2494 18 1 1.6064 -1.7216 -1.2979 19 6 1.6522 0.0705 -2.4979 20 6 2.1674 1.5055 -2.3709 21 7 1.9364 2.2204 -3.6287 22 6 2.3177 3.5298 -3.7520 23 1 2.7883 4.0357 -2.9220 24 6 2.0993 4.2069 -4.9439 25 7 1.5263 3.5903 -5.9558 26 14 2.6200 5.9930 -5.1125 27 1 3.2372 6.4507 -3.8417 28 1 3.6060 6.1192 -6.2157 29 1 1.4304 6.8291 -5.4137 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6577 -0.2243 2.1389 34 1 1.6972 -1.7570 1.2353 35 1 3.9154 0.3402 1.2546 36 1 3.9335 -1.1878 2.1679 37 1 5.1902 -1.3227 -0.0129 38 1 3.8409 -2.4811 0.0885 39 1 6.0603 0.2504 -1.1841 40 1 6.1321 -1.3975 -1.8528 41 1 6.0024 1.1472 -3.5307 42 1 6.3155 0.6477 -5.9303 43 1 6.5180 -1.0591 -6.4002 44 1 8.6900 0.2241 -6.3625 45 1 8.6791 -1.1641 -5.2467 46 1 8.1800 1.7614 -4.5237 47 1 9.5992 0.7814 -4.0758 48 1 2.0930 -0.3972 -3.3782 49 1 0.5669 0.0816 -2.5973 50 1 1.6385 2.0114 -1.5631 51 1 3.2352 1.4902 -2.1525 52 1 1.5134 1.7661 -4.3741 53 1 1.3733 4.0636 -6.7885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488993179.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:28 Heat of formation + Delta-G solvation = -117.034699 kcal Electronic energy + Delta-G solvation = -32880.743513 eV Core-core repulsion = 28752.706249 eV Total energy + Delta-G solvation = -4128.037264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.98607 -40.82091 -38.59404 -36.86563 -36.68187 -35.17152 -34.16200 -33.88246 -32.57399 -31.34513 -29.68182 -27.48305 -26.97408 -26.62089 -25.29783 -24.19571 -23.58361 -22.25971 -22.10973 -20.96788 -19.81303 -19.09982 -18.48687 -17.82279 -17.52835 -17.23230 -16.86969 -16.59979 -16.32481 -15.87221 -15.76469 -15.71815 -15.49971 -15.07736 -14.86192 -14.67393 -14.33227 -14.30916 -14.25861 -13.91995 -13.75685 -13.43931 -13.17415 -13.02270 -12.93117 -12.85761 -12.54717 -12.45238 -12.34384 -12.26116 -12.14328 -12.10351 -12.00574 -11.90550 -11.67984 -11.55909 -11.36508 -11.14471 -11.02323 -10.82693 -10.71666 -9.80436 -9.38039 -8.85750 -7.92896 -5.18820 1.39390 1.42205 1.51923 1.78501 1.92905 2.54352 2.63119 2.66445 3.38684 3.58786 3.74446 3.74999 3.76834 3.84383 3.88389 3.93141 4.09862 4.13852 4.17916 4.20808 4.31976 4.37826 4.40636 4.42599 4.52318 4.59073 4.61704 4.66547 4.68817 4.71372 4.76051 4.81682 4.88034 4.90654 4.95150 4.97387 5.06204 5.07749 5.17402 5.29805 5.30121 5.38114 5.43590 5.45172 5.55244 5.61361 5.77888 5.87784 6.12263 6.29386 6.57953 7.33316 7.44075 8.16925 8.40463 9.31968 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006418 B = 0.005965 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4361.731010 B = 4692.618347 C = 8102.272345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.053 0.947 4 C -0.108 4.108 5 C -0.132 4.132 6 C 0.101 3.899 7 N -0.609 5.609 8 C 0.498 3.502 9 O -0.528 6.528 10 C -0.115 4.115 11 C 0.266 3.734 12 O -0.397 6.397 13 C 0.047 3.953 14 C -0.179 4.179 15 C 0.048 3.952 16 O -0.400 6.400 17 C 0.168 3.832 18 H 0.084 0.916 19 C -0.122 4.122 20 C 0.184 3.816 21 N -0.734 5.734 22 C -0.233 4.233 23 H 0.065 0.935 24 C -0.082 4.082 25 N -0.972 5.972 26 Si 0.971 3.029 27 H -0.268 1.268 28 H -0.292 1.292 29 H -0.289 1.289 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.028 0.972 42 H 0.031 0.969 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.046 0.954 47 H 0.130 0.870 48 H 0.080 0.920 49 H 0.046 0.954 50 H -0.007 1.007 51 H 0.016 0.984 52 H 0.367 0.633 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.822 -15.067 15.340 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.170 4.170 6 C -0.021 4.021 7 N -0.344 5.344 8 C 0.286 3.714 9 O -0.404 6.404 10 C -0.154 4.154 11 C 0.171 3.829 12 O -0.318 6.318 13 C -0.029 4.029 14 C -0.217 4.217 15 C -0.028 4.028 16 O -0.322 6.322 17 C 0.064 3.936 18 H 0.102 0.898 19 C -0.159 4.159 20 C 0.058 3.942 21 N -0.375 5.375 22 C -0.365 4.365 23 H 0.083 0.917 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.800 3.200 27 H -0.192 1.192 28 H -0.219 1.219 29 H -0.216 1.216 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.148 0.852 48 H 0.098 0.902 49 H 0.064 0.936 50 H 0.010 0.990 51 H 0.034 0.966 52 H 0.198 0.802 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.622 -14.918 15.079 24.186 hybrid contribution -0.242 1.565 -1.387 2.105 sum 11.380 -13.353 13.691 22.254 Atomic orbital electron populations 1.21770 0.94151 1.02515 1.01557 1.21572 0.96426 0.99413 0.94943 0.92865 1.21563 0.95609 1.01137 0.96210 1.21935 0.95771 1.01024 0.98311 1.22063 0.99254 0.97882 0.82856 1.48086 1.06011 1.61495 1.18816 1.20562 0.89407 0.77670 0.83756 1.90952 1.73986 1.45604 1.29863 1.21488 0.91329 1.06188 0.96442 1.22733 0.80663 0.91737 0.87809 1.88088 1.74983 1.50206 1.18490 1.22783 0.93409 1.00516 0.86237 1.22731 0.95803 1.02321 1.00809 1.22927 0.98909 0.95938 0.85035 1.87976 1.19721 1.86577 1.37878 1.21163 0.79496 0.98601 0.94326 0.89797 1.22146 0.98628 0.95718 0.99414 1.20796 0.96151 0.90741 0.86559 1.42450 1.72353 1.09842 1.12814 1.19598 1.30499 0.89016 0.97394 0.91713 1.25550 1.03093 1.02607 0.96064 1.69863 1.50951 1.37535 1.04047 0.85093 0.77249 0.80092 0.77535 1.19221 1.21934 1.21611 0.91508 0.94550 0.91002 0.90805 0.90280 0.92784 0.87765 0.88071 0.89329 0.85165 0.85319 0.95476 0.95015 0.87340 0.87427 0.89145 0.93598 0.85182 0.90225 0.93590 0.98952 0.96621 0.80225 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.97 71.98 0.65 -2.61 16 2 C -0.10 -2.50 2.02 -10.72 -0.02 -2.52 16 3 H 0.05 1.60 6.20 -2.39 -0.01 1.59 16 4 C -0.11 -1.68 5.17 30.62 0.16 -1.52 16 5 C -0.13 -1.79 6.08 30.68 0.19 -1.60 16 6 C 0.10 1.52 6.35 86.36 0.55 2.07 16 7 N -0.61 -15.60 2.92 -795.01 -2.32 -17.92 16 8 C 0.50 16.29 6.00 87.66 0.53 16.82 16 9 O -0.53 -23.26 9.32 10.72 0.10 -23.16 16 10 C -0.11 -3.00 4.14 29.85 0.12 -2.88 16 11 C 0.27 8.73 2.80 71.98 0.20 8.93 16 12 O -0.40 -13.98 9.77 -120.75 -1.18 -15.16 16 13 C 0.05 1.39 6.96 72.07 0.50 1.89 16 14 C -0.18 -3.80 6.35 30.77 0.20 -3.61 16 15 C 0.05 1.09 6.96 72.07 0.50 1.59 16 16 O -0.40 -11.22 10.54 -126.22 -1.33 -12.55 16 17 C 0.17 4.67 2.66 44.97 0.12 4.79 16 18 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 19 C -0.12 -4.78 4.22 30.59 0.13 -4.65 16 20 C 0.18 8.69 4.37 86.38 0.38 9.07 16 21 N -0.73 -43.14 5.56 -343.45 -1.91 -45.05 16 22 C -0.23 -14.52 9.99 84.03 0.84 -13.68 16 23 H 0.06 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.08 -5.12 5.50 84.86 0.47 -4.65 16 25 N -0.97 -64.69 13.06 21.65 0.28 -64.40 16 26 Si 0.97 49.65 29.55 68.60 2.03 51.68 16 27 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 28 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 29 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.04 6.72 -2.39 -0.02 1.02 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 1.17 5.93 -2.39 -0.01 1.16 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.13 2.78 7.92 -2.39 -0.02 2.76 16 40 H 0.13 2.64 7.71 -2.39 -0.02 2.62 16 41 H 0.03 1.13 7.95 -2.39 -0.02 1.11 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.13 2.08 8.14 -2.38 -0.02 2.06 16 48 H 0.08 3.65 5.72 -19.17 -0.11 3.54 16 49 H 0.05 1.80 6.85 -2.39 -0.02 1.79 16 50 H -0.01 -0.34 6.64 -2.38 -0.02 -0.35 16 51 H 0.02 0.78 5.08 -2.39 -0.01 0.77 16 52 H 0.37 23.32 7.67 -92.71 -0.71 22.61 16 53 H 0.25 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -82.89 395.12 1.26 -81.64 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.09 Total: 37.49 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.50 Total: 7.43 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -3.95 Total: -127.38 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -2.41 Total: -50.86 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.03 Total: 51.68 kcal Total: -82.89 1.26 -81.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488993179.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.397 kcal (2) G-P(sol) polarization free energy of solvation -82.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds