Wall clock time and date at job start Sat Apr 11 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 114.00018 * 2 1 4 4 C 1.52992 * 109.47047 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.54351 * 299.99544 * 4 3 2 6 6 O 1.21276 * 120.00012 * 239.99991 * 5 4 3 7 7 N 1.34778 * 119.99839 * 60.00202 * 5 4 3 8 8 C 1.46498 * 119.99912 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.52132 * 34.91961 * 8 7 5 10 10 C 1.53032 * 109.49960 * 274.84007 * 8 7 5 11 11 C 1.53041 * 109.53949 * 301.41418 * 10 8 7 12 12 C 1.53194 * 109.30959 * 298.63623 * 11 10 8 13 13 N 1.46922 * 108.77555 * 54.63361 * 12 11 10 14 14 C 1.36947 * 120.62947 * 126.41209 * 13 12 11 15 15 H 1.07991 * 119.99978 * 209.01845 * 14 13 12 16 16 C 1.38813 * 119.99697 * 29.01692 * 14 13 12 17 17 N 1.31613 * 120.00284 * 15.06927 * 16 14 13 18 18 Si 1.86797 * 119.99826 * 195.06278 * 16 14 13 19 19 H 1.48504 * 109.47088 * 90.00343 * 18 16 14 20 20 H 1.48501 * 109.47387 * 210.00409 * 18 16 14 21 21 H 1.48507 * 109.47183 * 330.00528 * 18 16 14 22 22 C 1.46922 * 118.74298 * 306.38807 * 13 12 11 23 23 H 1.08997 * 109.58648 * 293.68289 * 22 13 12 24 24 C 1.52992 * 109.59002 * 173.39648 * 22 13 12 25 25 C 1.53177 * 109.54768 * 60.17481 * 4 3 2 26 26 C 1.53282 * 109.06516 * 176.85317 * 25 4 3 27 27 O 1.42907 * 109.45925 * 302.44228 * 26 25 4 28 28 C 1.42907 * 114.09486 * 61.16242 * 27 26 25 29 29 C 1.53087 * 109.41324 * 298.83796 * 28 27 26 30 30 H 1.09000 * 109.46667 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46720 * 300.00249 * 1 2 3 32 32 H 1.09000 * 109.46903 * 59.99986 * 1 2 3 33 33 H 1.08998 * 109.47169 * 59.99734 * 3 2 1 34 34 H 1.09002 * 109.46538 * 299.99567 * 3 2 1 35 35 H 0.97000 * 119.99723 * 0.02562 * 7 5 4 36 36 H 1.08999 * 109.45898 * 181.39499 * 10 8 7 37 37 H 1.09001 * 109.44893 * 61.42557 * 10 8 7 38 38 H 1.08999 * 109.50153 * 178.68442 * 11 10 8 39 39 H 1.09000 * 109.52583 * 58.59926 * 11 10 8 40 40 H 1.08994 * 109.58842 * 294.84486 * 12 11 10 41 41 H 1.09007 * 109.70282 * 174.48757 * 12 11 10 42 42 H 0.96998 * 120.00129 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.47004 * 60.00152 * 24 22 13 44 44 H 1.09000 * 109.47117 * 300.00408 * 24 22 13 45 45 H 1.09005 * 109.47354 * 180.02562 * 24 22 13 46 46 H 1.08997 * 109.52218 * 296.84302 * 25 4 3 47 47 H 1.09003 * 109.52315 * 57.02963 * 25 4 3 48 48 H 1.09001 * 109.45658 * 182.45018 * 26 25 4 49 49 H 1.08997 * 109.46819 * 62.45129 * 26 25 4 50 50 H 1.09004 * 109.47559 * 178.85874 * 28 27 26 51 51 H 1.08997 * 109.48750 * 58.82732 * 28 27 26 52 52 H 1.09003 * 109.52738 * 297.70627 * 29 28 27 53 53 H 1.08997 * 109.52557 * 177.51558 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9824 0.4368 1.2291 6 8 4.7249 0.9696 2.0263 7 7 3.5571 -0.8241 1.4427 8 6 3.9920 -1.5513 2.6378 9 1 4.0867 -0.8567 3.4724 10 6 5.3450 -2.2137 2.3685 11 6 5.2211 -3.1646 1.1758 12 6 4.2031 -4.2608 1.5056 13 7 2.9394 -3.6276 1.9064 14 6 1.7644 -3.9620 1.2876 15 1 0.9666 -3.2376 1.2160 16 6 1.5988 -5.2320 0.7523 17 7 2.4257 -6.1999 1.0864 18 14 0.2023 -5.5674 -0.4421 19 1 0.6662 -5.3135 -1.8298 20 1 -0.2284 -6.9829 -0.3153 21 1 -0.9410 -4.6722 -0.1308 22 6 2.9601 -2.6292 2.9841 23 1 3.2328 -3.1108 3.9232 24 6 1.5764 -1.9905 3.1183 25 6 3.9891 0.4287 -1.2533 26 6 5.5210 0.3827 -1.2829 27 8 6.0380 1.7146 -1.2542 28 6 5.6836 2.4529 -0.0830 29 6 4.1603 2.5832 -0.0052 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 2.9635 -1.2503 0.8048 36 1 5.6563 -2.7749 3.2495 37 1 6.0867 -1.4466 2.1457 38 1 6.1905 -3.6183 0.9699 39 1 4.8861 -2.6087 0.3000 40 1 4.5796 -4.8750 2.3235 41 1 4.0368 -4.8843 0.6270 42 1 2.3098 -7.0875 0.7127 43 1 0.8417 -2.7609 3.3522 44 1 1.3077 -1.5052 2.1800 45 1 1.5940 -1.2499 3.9179 46 1 3.5925 -0.5862 -1.2298 47 1 3.6233 0.9433 -2.1418 48 1 5.8517 -0.1160 -2.1940 49 1 5.8847 -0.1673 -0.4150 50 1 6.1315 3.4455 -0.1297 51 1 6.0494 1.9302 0.8008 52 1 3.7978 3.1413 -0.8685 53 1 3.8859 3.1077 0.9101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507372371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:19 Heat of formation + Delta-G solvation = -128.562862 kcal Electronic energy + Delta-G solvation = -34365.295665 eV Core-core repulsion = 30236.758502 eV Total energy + Delta-G solvation = -4128.537163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -42.03035 -40.05974 -38.68972 -38.56485 -35.55993 -35.16201 -33.92944 -33.33131 -32.01541 -30.95545 -29.10396 -27.89572 -26.95258 -26.75378 -24.81004 -24.46939 -23.64278 -22.84465 -22.32765 -20.53597 -20.15785 -18.24990 -17.90723 -17.42697 -17.37793 -16.99680 -16.83902 -16.61245 -16.32021 -16.06019 -15.78979 -15.60517 -15.47268 -15.10792 -15.02134 -14.58407 -14.48626 -14.30696 -14.19883 -13.54399 -13.34944 -13.27908 -13.12371 -12.92680 -12.91199 -12.79687 -12.67991 -12.43766 -12.32114 -12.26739 -12.16640 -12.12651 -11.86931 -11.66813 -11.61082 -11.46143 -11.31417 -11.01372 -10.74263 -10.53268 -10.44806 -10.25471 -9.75007 -8.56489 -7.76162 -5.21788 1.51156 1.53115 1.59940 1.73386 2.38508 2.57586 2.74459 2.96012 3.40007 3.59144 3.62350 3.64365 3.84851 3.96919 4.06941 4.10057 4.11478 4.21355 4.26147 4.37742 4.41124 4.45924 4.57234 4.59350 4.62374 4.66016 4.67282 4.69992 4.72839 4.79154 4.80910 4.87413 4.94985 4.98987 5.00361 5.05234 5.07128 5.10331 5.13406 5.20784 5.26849 5.37052 5.52217 5.58926 5.76039 5.80742 5.85432 6.22603 6.24287 6.49418 6.86850 7.24382 7.45640 7.94563 8.48115 9.30616 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.004948 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.950967 B = 5656.976827 C = 6282.410543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.404 6.404 3 C 0.075 3.925 4 C -0.076 4.076 5 C 0.519 3.481 6 O -0.583 6.583 7 N -0.683 5.683 8 C 0.140 3.860 9 H 0.074 0.926 10 C -0.113 4.113 11 C -0.124 4.124 12 C 0.179 3.821 13 N -0.592 5.592 14 C -0.234 4.234 15 H 0.080 0.920 16 C -0.051 4.051 17 N -0.938 5.938 18 Si 0.955 3.045 19 H -0.289 1.289 20 H -0.307 1.307 21 H -0.264 1.264 22 C 0.158 3.842 23 H 0.026 0.974 24 C -0.127 4.127 25 C -0.132 4.132 26 C 0.059 3.941 27 O -0.393 6.393 28 C 0.049 3.951 29 C -0.119 4.119 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.051 0.949 40 H -0.007 1.007 41 H 0.057 0.943 42 H 0.244 0.756 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.109 0.891 49 H 0.028 0.972 50 H 0.110 0.890 51 H 0.051 0.949 52 H 0.100 0.900 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 17.563 -4.021 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.323 6.323 3 C -0.001 4.001 4 C -0.079 4.079 5 C 0.305 3.695 6 O -0.465 6.465 7 N -0.335 5.335 8 C 0.033 3.967 9 H 0.092 0.908 10 C -0.152 4.152 11 C -0.163 4.163 12 C 0.053 3.947 13 N -0.316 5.316 14 C -0.364 4.364 15 H 0.097 0.903 16 C -0.246 4.246 17 N -0.586 5.586 18 Si 0.785 3.215 19 H -0.217 1.217 20 H -0.234 1.234 21 H -0.188 1.188 22 C 0.051 3.949 23 H 0.043 0.957 24 C -0.185 4.185 25 C -0.170 4.170 26 C -0.018 4.018 27 O -0.312 6.312 28 C -0.027 4.027 29 C -0.157 4.157 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.011 0.989 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.118 0.882 48 H 0.127 0.873 49 H 0.047 0.953 50 H 0.128 0.872 51 H 0.070 0.930 52 H 0.119 0.881 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.435 17.654 -3.639 18.031 hybrid contribution -1.101 -1.230 -0.274 1.673 sum -0.666 16.425 -3.913 16.897 Atomic orbital electron populations 1.22816 0.79428 1.03112 1.00941 1.87805 1.21307 1.27698 1.95503 1.22526 0.89947 0.85433 1.02227 1.20997 0.96133 0.97239 0.93543 1.20697 0.79739 0.81838 0.87194 1.90580 1.38355 1.68987 1.48543 1.46075 1.48909 1.13477 1.25027 1.21283 0.94332 0.93086 0.87993 0.90831 1.21697 0.96643 0.98016 0.98840 1.21935 0.98985 0.97743 0.97657 1.20580 0.84483 0.92001 0.97620 1.44280 1.03614 1.45614 1.38077 1.19457 0.94210 0.94366 1.28399 0.90280 1.25718 1.00333 0.95454 1.03073 1.70174 1.41104 1.01007 1.46269 0.85437 0.80257 0.76266 0.79535 1.21665 1.23411 1.18817 1.20806 0.94628 0.88908 0.90541 0.95655 1.21707 0.95851 0.99361 1.01571 1.22173 0.96248 1.01624 0.96939 1.22639 0.93180 0.83912 1.02088 1.87868 1.75073 1.25693 1.42616 1.22842 0.94674 0.97343 0.87863 1.21937 0.96113 0.93427 1.04241 0.90276 0.93328 0.92168 0.92524 0.89649 0.74509 0.91778 0.92982 0.92210 0.93031 0.98929 0.92428 0.94668 0.93587 0.91657 0.92400 0.90624 0.88209 0.87303 0.95329 0.87163 0.93044 0.88144 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.40 -10.00 7.33 -148.98 -1.09 -11.10 16 3 C 0.08 1.52 4.81 71.98 0.35 1.87 16 4 C -0.08 -1.79 0.53 -52.81 -0.03 -1.82 16 5 C 0.52 15.94 5.11 87.66 0.45 16.39 16 6 O -0.58 -20.67 13.51 -3.02 -0.04 -20.71 16 7 N -0.68 -22.40 2.98 -442.17 -1.32 -23.72 16 8 C 0.14 4.94 2.33 45.07 0.10 5.05 16 9 H 0.07 2.61 7.58 -2.39 -0.02 2.60 16 10 C -0.11 -4.00 5.58 30.62 0.17 -3.83 16 11 C -0.12 -4.71 5.93 30.67 0.18 -4.52 16 12 C 0.18 8.35 5.29 86.36 0.46 8.80 16 13 N -0.59 -27.18 2.65 -675.25 -1.79 -28.97 16 14 C -0.23 -11.57 8.60 84.03 0.72 -10.85 16 15 H 0.08 3.73 6.21 -2.92 -0.02 3.71 16 16 C -0.05 -2.69 4.96 84.86 0.42 -2.27 16 17 N -0.94 -53.62 11.14 21.65 0.24 -53.38 16 18 Si 0.96 42.71 29.58 68.60 2.03 44.74 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.31 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 22 C 0.16 6.20 3.20 44.97 0.14 6.35 16 23 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 24 C -0.13 -4.49 7.73 71.98 0.56 -3.93 16 25 C -0.13 -3.07 4.68 30.75 0.14 -2.93 16 26 C 0.06 1.49 6.62 72.08 0.48 1.97 16 27 O -0.39 -10.29 10.77 -148.98 -1.60 -11.90 16 28 C 0.05 1.17 6.55 72.01 0.47 1.64 16 29 C -0.12 -2.43 4.56 30.68 0.14 -2.29 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.42 14.48 5.14 -92.71 -0.48 14.00 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.97 7.53 -2.39 -0.02 1.95 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.06 3.05 6.06 -2.38 -0.01 3.04 16 42 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 43 H 0.05 1.75 7.62 -2.39 -0.02 1.73 16 44 H 0.06 2.27 6.11 -2.39 -0.01 2.25 16 45 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.08 2.02 7.16 -2.39 -0.02 2.00 16 47 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.03 0.86 7.38 -2.39 -0.02 0.84 16 50 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 51 H 0.05 1.53 5.81 -2.39 -0.01 1.51 16 52 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 53 H 0.08 1.67 8.02 -2.39 -0.02 1.65 16 Total: -1.00 -61.71 391.80 2.85 -58.87 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.41 Total: 34.62 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 6.01 Total: 11.54 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -2.86 Total: -106.06 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -2.74 Total: -43.70 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -61.71 2.85 -58.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.696 kcal (2) G-P(sol) polarization free energy of solvation -61.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds