Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 5 5 C 1.36931 * 119.99788 * 84.99932 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48496 * 109.47141 * 59.99751 * 9 7 5 11 11 H 1.48490 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00028 * 9 7 5 13 13 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 14 14 C 1.53039 * 109.46082 * 60.02536 * 13 2 1 15 15 C 1.53190 * 109.30857 * 178.60274 * 14 13 2 16 16 N 1.46932 * 108.76805 * 54.65950 * 15 14 13 17 17 C 1.34777 * 120.62917 * 126.35655 * 16 15 14 18 18 O 1.21286 * 119.99224 * 180.02562 * 17 16 15 19 19 C 1.50700 * 120.00549 * 0.02562 * 17 16 15 20 20 O 1.42898 * 109.47269 * 179.97438 * 19 17 16 21 21 C 1.42894 * 114.00155 * 179.97438 * 20 19 17 22 22 C 1.53000 * 109.47500 * 179.97438 * 21 20 19 23 23 H 1.08999 * 110.32875 * 307.25305 * 22 21 20 24 24 C 1.54476 * 110.37472 * 185.00091 * 22 21 20 25 25 C 1.54500 * 104.06359 * 217.19003 * 24 22 21 26 26 C 1.54481 * 104.06327 * 359.97438 * 25 24 22 27 27 O 1.44422 * 110.36855 * 69.61621 * 22 21 20 28 28 C 1.46917 * 118.73407 * 306.37995 * 16 15 14 29 29 C 1.53043 * 109.45792 * 299.97336 * 13 2 1 30 30 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 32 32 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99792 * 264.99726 * 4 2 1 34 34 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46347 * 180.02562 * 13 2 1 36 36 H 1.08997 * 109.49876 * 298.56721 * 14 13 2 37 37 H 1.08997 * 109.49494 * 58.66535 * 14 13 2 38 38 H 1.08999 * 109.60151 * 294.86655 * 15 14 13 39 39 H 1.09010 * 109.58225 * 174.43449 * 15 14 13 40 40 H 1.09007 * 109.46687 * 299.99969 * 19 17 16 41 41 H 1.08992 * 109.46945 * 59.99668 * 19 17 16 42 42 H 1.09000 * 109.46833 * 300.00555 * 21 20 19 43 43 H 1.09002 * 109.47292 * 59.99822 * 21 20 19 44 44 H 1.08999 * 110.50834 * 335.83671 * 24 22 21 45 45 H 1.08995 * 110.50847 * 98.54109 * 24 22 21 46 46 H 1.09000 * 110.51687 * 118.64476 * 25 24 22 47 47 H 1.09004 * 110.51287 * 241.21984 * 25 24 22 48 48 H 1.09000 * 110.37483 * 142.80999 * 26 25 24 49 49 H 1.09006 * 110.37152 * 265.03702 * 26 25 24 50 50 H 1.09004 * 109.58868 * 293.81788 * 28 16 15 51 51 H 1.09006 * 109.70465 * 173.46697 * 28 16 15 52 52 H 1.09003 * 109.49555 * 301.33651 * 29 13 2 53 53 H 1.08994 * 109.49984 * 61.43034 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0405 -2.4242 7 6 2.6172 -0.6605 -3.5077 8 7 2.9303 -1.9375 -3.4485 9 14 2.8029 0.2732 -5.1149 10 1 3.7570 1.3957 -4.9279 11 1 3.3164 -0.6440 -6.1637 12 1 1.4824 0.8102 -5.5308 13 6 2.0400 -0.7213 1.2492 14 6 1.5303 -2.1643 1.2486 15 6 2.0715 -2.8932 2.4826 16 7 1.7086 -2.1258 3.6819 17 6 1.0552 -2.7154 4.7026 18 8 0.7609 -2.0709 5.6870 19 6 0.6903 -4.1752 4.6209 20 8 0.0096 -4.5637 5.8158 21 6 -0.3832 -5.9374 5.8406 22 6 -1.0985 -6.2398 7.1588 23 1 -0.4856 -5.9243 8.0032 24 6 -1.4216 -7.7468 7.2621 25 6 -2.8023 -7.7882 7.9541 26 6 -3.1498 -6.3013 8.1877 27 8 -2.3843 -5.5833 7.1951 28 6 2.0712 -0.7036 3.7469 29 6 1.5303 0.0007 2.4986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.2571 -2.3939 -4.2397 35 1 3.1301 -0.7208 1.2493 36 1 0.4406 -2.1653 1.2741 37 1 1.8741 -2.6712 0.3470 38 1 3.1564 -2.9724 2.4139 39 1 1.6331 -3.8896 2.5399 40 1 0.0397 -4.3395 3.7619 41 1 1.5965 -4.7705 4.5095 42 1 -1.0565 -6.1378 5.0071 43 1 0.5005 -6.5696 5.7538 44 1 -1.4781 -8.1941 6.2697 45 1 -0.6742 -8.2568 7.8699 46 1 -3.5416 -8.2560 7.3040 47 1 -2.7381 -8.3208 8.9030 48 1 -4.2163 -6.1328 8.0386 49 1 -2.8549 -5.9959 9.1917 50 1 3.1561 -0.6042 3.7814 51 1 1.6346 -0.2534 4.6385 52 1 1.8741 1.0351 2.4868 53 1 0.4406 -0.0208 2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567634391.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = -140.814820 kcal Electronic energy + Delta-G solvation = -30162.381621 eV Core-core repulsion = 26033.313174 eV Total energy + Delta-G solvation = -4129.068447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.37656 -40.45393 -39.43344 -38.24963 -36.82021 -34.67733 -33.14302 -32.77502 -31.95688 -31.70737 -30.05728 -28.77936 -26.63246 -26.10042 -25.32711 -24.22924 -22.93141 -22.83288 -21.95043 -20.83041 -19.66799 -19.24103 -18.47866 -17.78869 -17.50751 -17.17054 -16.77169 -16.64205 -16.45402 -16.33224 -15.95851 -15.54674 -15.40853 -15.22474 -15.09296 -14.61481 -14.43797 -14.25080 -14.19923 -13.74522 -13.68401 -13.16312 -13.08164 -12.95585 -12.87221 -12.75143 -12.70811 -12.63944 -12.62013 -12.20853 -12.18317 -12.15155 -11.98685 -11.74722 -11.58751 -11.48452 -11.24844 -11.11569 -10.87289 -10.76819 -10.73887 -10.71885 -9.68065 -8.94169 -7.90324 -5.16153 1.48873 1.50387 1.52161 1.56340 1.70468 2.58976 2.73732 2.95148 3.42921 3.47468 3.67751 3.78615 3.82203 3.89781 3.94708 3.99809 4.10859 4.13434 4.15818 4.23607 4.27239 4.29285 4.36554 4.40198 4.43129 4.50858 4.56112 4.56921 4.67148 4.74311 4.80266 4.81418 4.88531 4.88885 4.95686 4.96084 5.00879 5.08441 5.10375 5.14530 5.17196 5.28151 5.36137 5.42710 5.54566 5.60300 5.72700 5.89211 6.06534 6.33449 6.37257 7.11466 7.40181 8.18539 8.42434 9.32798 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.001894 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.239303 B =14779.436293 C =15457.984862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.038 0.962 4 N -0.733 5.733 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.965 3.035 10 H -0.280 1.280 11 H -0.296 1.296 12 H -0.283 1.283 13 C -0.080 4.080 14 C -0.124 4.124 15 C 0.109 3.891 16 N -0.603 5.603 17 C 0.510 3.490 18 O -0.576 6.576 19 C 0.046 3.954 20 O -0.394 6.394 21 C 0.061 3.939 22 C 0.068 3.932 23 H 0.068 0.932 24 C -0.142 4.142 25 C -0.150 4.150 26 C 0.031 3.969 27 O -0.400 6.400 28 C 0.115 3.885 29 C -0.118 4.118 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.062 0.938 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.085 0.915 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -13.386 22.957 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.056 0.944 4 N -0.375 5.375 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.795 3.205 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.209 1.209 13 C -0.100 4.100 14 C -0.163 4.163 15 C -0.012 4.012 16 N -0.337 5.337 17 C 0.299 3.701 18 O -0.456 6.456 19 C -0.033 4.033 20 O -0.313 6.313 21 C -0.015 4.015 22 C 0.010 3.990 23 H 0.086 0.914 24 C -0.179 4.179 25 C -0.188 4.188 26 C -0.045 4.045 27 O -0.320 6.320 28 C -0.008 4.008 29 C -0.156 4.156 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.101 0.899 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.097 0.903 52 H 0.104 0.896 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.581 -12.599 23.375 27.358 hybrid contribution 0.214 0.144 -1.385 1.409 sum -6.367 -12.455 21.990 26.062 Atomic orbital electron populations 1.22382 0.98420 1.00825 1.00005 1.20413 0.92391 0.94835 0.86043 0.94432 1.42640 1.78330 1.10525 1.05964 1.19551 1.34470 0.94065 0.88716 0.91271 1.25424 1.03289 0.96917 1.01036 1.69772 1.52695 1.09929 1.29354 0.85328 0.77722 0.77419 0.79999 1.20680 1.22243 1.20925 1.21247 0.99939 0.95168 0.93621 1.21892 1.01053 0.95684 0.97637 1.21978 1.01530 0.95343 0.82391 1.48157 1.56637 1.11314 1.17591 1.20801 0.76992 0.90068 0.82215 1.90683 1.55097 1.66585 1.33191 1.22378 0.99552 0.91970 0.89435 1.88009 1.76930 1.28075 1.38300 1.22874 0.99155 0.82039 0.97416 1.23172 0.85546 0.92986 0.97291 0.91374 1.22926 0.98178 0.93621 1.03199 1.22943 0.97041 0.96276 1.02521 1.23629 0.97283 0.91489 0.92136 1.89230 1.25913 1.56532 1.60352 1.21610 1.00508 0.79921 0.98718 1.21918 1.01121 0.99804 0.92805 0.91714 0.95284 0.93468 0.78982 0.94159 0.91539 0.91655 0.91376 0.89616 0.87347 0.88283 0.86943 0.91697 0.88667 0.89352 0.88210 0.89926 0.88620 0.88524 0.91948 0.90096 0.90258 0.89644 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 8.79 71.98 0.63 -4.81 16 2 C 0.17 6.38 2.72 44.99 0.12 6.50 16 3 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 4 N -0.73 -35.02 5.04 -322.93 -1.63 -36.65 16 5 C -0.24 -12.79 9.93 84.04 0.83 -11.96 16 6 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 7 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.97 -57.29 13.06 21.65 0.28 -57.01 16 9 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 C -0.08 -2.34 2.14 -10.77 -0.02 -2.36 16 14 C -0.12 -3.29 4.81 30.67 0.15 -3.15 16 15 C 0.11 2.17 6.34 86.36 0.55 2.71 16 16 N -0.60 -14.18 2.97 -818.88 -2.43 -16.62 16 17 C 0.51 13.90 7.78 87.66 0.68 14.58 16 18 O -0.58 -21.21 15.92 15.99 0.25 -20.95 16 19 C 0.05 0.90 4.76 71.24 0.34 1.24 16 20 O -0.39 -9.92 9.88 -128.36 -1.27 -11.19 16 21 C 0.06 1.01 5.54 71.98 0.40 1.41 16 22 C 0.07 1.16 3.57 31.10 0.11 1.27 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 C -0.14 -1.34 6.63 31.61 0.21 -1.13 16 25 C -0.15 -1.36 7.09 31.61 0.22 -1.14 16 26 C 0.03 0.45 7.63 72.49 0.55 1.01 16 27 O -0.40 -9.28 11.35 -148.94 -1.69 -10.97 16 28 C 0.11 2.73 6.43 86.36 0.56 3.28 16 29 C -0.12 -2.90 4.96 30.67 0.15 -2.75 16 30 H 0.06 1.89 6.46 -2.39 -0.02 1.87 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.63 6.46 -2.39 -0.02 1.62 16 33 H 0.38 18.84 6.04 -92.71 -0.56 18.28 16 34 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.78 6.51 -2.39 -0.02 1.76 16 37 H 0.07 2.11 6.46 -2.39 -0.02 2.09 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 1.54 5.93 -2.38 -0.01 1.52 16 40 H 0.10 1.59 7.69 -2.38 -0.02 1.57 16 41 H 0.11 1.43 7.94 -2.39 -0.02 1.41 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 0.68 7.87 -2.39 -0.02 0.66 16 45 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 51 H 0.08 2.10 7.01 -2.38 -0.02 2.09 16 52 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.06 1.68 6.51 -2.39 -0.02 1.67 16 Total: -1.00 -75.99 408.67 1.83 -74.16 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.33 Total: 30.53 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.95 Total: 1.01 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -3.78 Total: -110.27 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -2.70 Total: -43.11 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -75.99 1.83 -74.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567634391.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.650 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds