Wall clock time and date at job start Sat Apr 11 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.35739 * 2 1 4 4 C 1.54951 * 110.31092 * 237.85548 * 2 1 3 5 5 C 1.55442 * 100.99102 * 204.69028 * 4 2 1 6 6 C 1.54380 * 102.18855 * 34.03848 * 5 4 2 7 7 H 1.09005 * 109.82904 * 98.29925 * 6 5 4 8 8 C 1.52993 * 109.83478 * 219.18047 * 6 5 4 9 9 C 1.53008 * 109.47487 * 184.81533 * 8 6 5 10 10 C 1.50697 * 109.47318 * 180.02562 * 9 8 6 11 11 O 1.21292 * 119.99778 * 359.97438 * 10 9 8 12 12 N 1.34765 * 120.00099 * 179.97438 * 10 9 8 13 13 C 1.46507 * 120.00469 * 174.71837 * 12 10 9 14 14 C 1.53008 * 109.53889 * 304.03116 * 13 12 10 15 15 N 1.46497 * 109.46932 * 305.57360 * 14 13 12 16 16 C 1.36936 * 119.99775 * 175.02751 * 15 14 13 17 17 H 1.08004 * 119.99837 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99977 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00273 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00107 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46839 * 89.99616 * 20 18 16 22 22 H 1.48491 * 109.47067 * 209.99828 * 20 18 16 23 23 H 1.48497 * 109.46937 * 329.99975 * 20 18 16 24 24 C 1.53172 * 109.54725 * 183.76220 * 13 12 10 25 25 C 1.53092 * 109.16509 * 297.11392 * 24 13 12 26 26 O 1.42901 * 109.41436 * 302.39142 * 25 24 13 27 27 C 1.42906 * 114.09772 * 61.15513 * 26 25 24 28 28 C 1.53090 * 109.41550 * 298.84350 * 27 26 25 29 29 O 1.43235 * 107.66310 * 338.73941 * 6 5 4 30 30 H 1.09008 * 109.46602 * 299.30989 * 1 2 3 31 31 H 1.09002 * 109.47193 * 59.30460 * 1 2 3 32 32 H 1.08993 * 109.47307 * 179.31124 * 1 2 3 33 33 H 1.08997 * 111.12402 * 322.56501 * 4 2 1 34 34 H 1.08999 * 111.12194 * 86.72073 * 4 2 1 35 35 H 1.09000 * 110.83759 * 275.89240 * 5 4 2 36 36 H 1.09006 * 110.92274 * 152.22659 * 5 4 2 37 37 H 1.08997 * 109.47155 * 64.81262 * 8 6 5 38 38 H 1.09002 * 109.47414 * 304.81488 * 8 6 5 39 39 H 1.09005 * 109.46479 * 299.99920 * 9 8 6 40 40 H 1.08997 * 109.46681 * 59.99985 * 9 8 6 41 41 H 0.96999 * 119.99899 * 354.71719 * 12 10 9 42 42 H 1.09003 * 109.46849 * 65.57519 * 14 13 12 43 43 H 1.08999 * 109.46639 * 185.57570 * 14 13 12 44 44 H 0.96997 * 120.00425 * 355.03058 * 15 14 13 45 45 H 0.97002 * 120.00425 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.52030 * 57.02078 * 24 13 12 47 47 H 1.08997 * 109.52010 * 177.20622 * 24 13 12 48 48 H 1.08997 * 109.48124 * 182.40534 * 25 24 13 49 49 H 1.09003 * 109.48872 * 62.37976 * 25 24 13 50 50 H 1.09002 * 109.47910 * 178.85795 * 27 26 25 51 51 H 1.09004 * 109.48962 * 58.83321 * 27 26 25 52 52 H 1.08996 * 109.52044 * 297.69948 * 28 27 26 53 53 H 1.09004 * 109.51977 * 177.51395 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0678 -0.7732 -1.2304 5 6 3.4709 -1.2047 -0.7191 6 6 3.2113 -1.4419 0.7841 7 1 3.0630 -2.5057 0.9703 8 6 4.3991 -0.9325 1.6028 9 6 4.1879 -1.2791 3.0780 10 6 5.3576 -0.7767 3.8845 11 8 6.2706 -0.1988 3.3335 12 7 5.3893 -0.9696 5.2179 13 6 6.5765 -0.5856 5.9857 14 6 7.8082 -1.2855 5.4076 15 7 7.5722 -2.7306 5.3619 16 6 8.4989 -3.5577 4.7855 17 1 9.4035 -3.1446 4.3642 18 6 8.2750 -4.9269 4.7416 19 7 7.1724 -5.4303 5.2545 20 14 9.5389 -6.0553 3.9546 21 1 10.5147 -6.4985 4.9825 22 1 8.8539 -7.2402 3.3787 23 1 10.2526 -5.3238 2.8773 24 6 6.3934 -0.9937 7.4507 25 6 5.2056 -0.2290 8.0407 26 8 5.4330 1.1758 7.9104 27 6 5.5646 1.6227 6.5594 28 6 6.7669 0.9324 5.9099 29 8 2.0287 -0.7167 1.1406 30 1 -0.3633 0.5031 0.8962 31 1 -0.3634 0.5246 -0.8837 32 1 -0.3633 -1.0275 -0.0124 33 1 1.4470 -1.6416 -1.4508 34 1 2.1496 -0.1204 -2.0995 35 1 4.1992 -0.4071 -0.8658 36 1 3.7970 -2.1237 -1.2063 37 1 4.4800 0.1487 1.4915 38 1 5.3150 -1.4040 1.2464 39 1 3.2720 -0.8075 3.4344 40 1 4.1070 -2.3603 3.1892 41 1 4.6260 -1.3626 5.6693 42 1 7.9964 -0.9159 4.3996 43 1 8.6730 -1.0783 6.0380 44 1 6.7595 -3.1016 5.7398 45 1 7.0161 -6.3872 5.2242 46 1 6.2021 -2.0652 7.5092 47 1 7.2965 -0.7528 8.0115 48 1 5.0970 -0.4834 9.0950 49 1 4.2958 -0.5012 7.5055 50 1 5.7147 2.7022 6.5466 51 1 4.6597 1.3749 6.0045 52 1 7.6775 1.2122 6.4396 53 1 6.8427 1.2383 4.8665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570310331.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:33 Heat of formation + Delta-G solvation = -154.319087 kcal Electronic energy + Delta-G solvation = -31728.554062 eV Core-core repulsion = 27598.900026 eV Total energy + Delta-G solvation = -4129.654036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.74111 -40.62010 -39.49578 -37.25486 -35.46113 -34.82251 -33.23557 -33.16822 -32.33712 -32.04122 -31.29940 -28.24410 -27.37970 -25.43349 -24.71412 -24.17820 -23.02432 -22.45641 -21.85892 -21.09468 -20.29098 -19.26155 -18.25173 -17.97687 -17.18326 -17.01485 -16.88931 -16.76562 -16.33967 -16.28053 -15.58817 -15.39416 -15.27580 -14.98711 -14.90912 -14.63071 -14.60020 -14.18335 -13.98661 -13.73682 -13.58397 -13.24777 -13.23810 -13.19070 -13.01018 -12.80807 -12.78115 -12.65339 -12.59478 -12.32263 -12.13306 -12.01196 -11.96440 -11.79356 -11.69612 -11.63122 -11.60795 -11.36318 -11.00923 -10.64298 -10.44550 -10.39562 -9.85364 -8.95837 -7.95906 -5.22059 1.44174 1.44815 1.53525 1.79808 2.30039 2.54302 2.84415 2.95436 3.36695 3.55968 3.60014 3.69770 3.79064 3.86227 3.87620 3.94545 4.01465 4.13233 4.19903 4.23925 4.26852 4.30284 4.39140 4.45772 4.51754 4.60554 4.68635 4.74469 4.75552 4.78451 4.79569 4.82297 4.86085 4.87230 4.90559 4.97798 5.05774 5.08004 5.10870 5.14260 5.15794 5.21098 5.25719 5.32661 5.35795 5.46047 5.69931 6.18129 6.23854 6.26525 6.68781 7.34287 7.41831 8.07421 8.37135 9.26704 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007588 B = 0.003900 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3689.358926 B = 7177.682379 C =10019.179821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 H 0.068 0.932 4 C -0.144 4.144 5 C -0.153 4.153 6 C 0.082 3.918 7 H 0.078 0.922 8 C -0.101 4.101 9 C -0.128 4.128 10 C 0.518 3.482 11 O -0.572 6.572 12 N -0.708 5.708 13 C 0.180 3.820 14 C 0.145 3.855 15 N -0.726 5.726 16 C -0.244 4.244 17 H 0.060 0.940 18 C -0.065 4.065 19 N -0.960 5.960 20 Si 0.966 3.034 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.279 1.279 24 C -0.148 4.148 25 C 0.066 3.934 26 O -0.392 6.392 27 C 0.073 3.927 28 C -0.156 4.156 29 O -0.391 6.391 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.406 0.594 42 H 0.023 0.977 43 H 0.013 0.987 44 H 0.378 0.622 45 H 0.251 0.749 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.115 0.885 49 H 0.062 0.938 50 H 0.108 0.892 51 H 0.052 0.948 52 H 0.076 0.924 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 13.232 -6.031 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.086 0.914 4 C -0.181 4.181 5 C -0.190 4.190 6 C 0.025 3.975 7 H 0.096 0.904 8 C -0.139 4.139 9 C -0.168 4.168 10 C 0.307 3.693 11 O -0.451 6.451 12 N -0.360 5.360 13 C 0.094 3.906 14 C 0.017 3.983 15 N -0.369 5.369 16 C -0.376 4.376 17 H 0.078 0.922 18 C -0.257 4.257 19 N -0.611 5.611 20 Si 0.795 3.205 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.186 4.186 25 C -0.011 4.011 26 O -0.311 6.311 27 C -0.004 4.004 28 C -0.195 4.195 29 O -0.311 6.311 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.242 0.758 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.211 0.789 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.133 0.867 49 H 0.080 0.920 50 H 0.126 0.874 51 H 0.070 0.930 52 H 0.095 0.905 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.137 13.720 -6.147 20.636 hybrid contribution 0.741 -1.552 -0.440 1.775 sum -13.395 12.168 -6.587 19.258 Atomic orbital electron populations 1.21872 0.92633 1.02829 1.03029 1.23163 0.95694 0.95539 0.84947 0.91410 1.23333 0.95202 1.01171 0.98419 1.23199 0.98591 1.03286 0.93940 1.22718 0.84545 0.95851 0.94394 0.90380 1.21586 0.97478 1.01567 0.93315 1.21573 0.96841 1.02790 0.95583 1.20990 0.88118 0.77832 0.82404 1.90592 1.39722 1.43462 1.71338 1.45897 1.18464 1.64238 1.07435 1.20391 0.85098 0.94026 0.91102 1.21084 0.94996 0.84324 0.97875 1.42224 1.23122 1.01011 1.70583 1.19487 0.99530 0.89169 1.29410 0.92192 1.25364 0.99635 0.97851 1.02896 1.69765 1.27230 1.11701 1.52409 0.85256 0.78527 0.78561 0.78110 1.21337 1.21707 1.20413 1.22358 1.01415 1.01385 0.93471 1.22673 0.95547 0.80201 1.02674 1.87895 1.92938 1.23627 1.26647 1.22517 0.96165 0.99443 0.82278 1.22467 1.00450 0.93883 1.02700 1.88412 1.42159 1.65015 1.35558 0.92368 0.89412 0.92206 0.89765 0.88282 0.90437 0.89232 0.91755 0.92215 0.87056 0.89220 0.75840 0.95856 0.96880 0.78873 0.93964 0.90769 0.90127 0.86749 0.91984 0.87399 0.92972 0.90505 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.62 71.98 0.69 -1.32 16 2 C 0.06 1.11 4.08 31.26 0.13 1.24 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.14 -2.08 6.57 32.10 0.21 -1.87 16 5 C -0.15 -2.81 6.56 31.90 0.21 -2.61 16 6 C 0.08 1.91 3.51 31.06 0.11 2.02 16 7 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 8 C -0.10 -2.82 4.07 30.59 0.12 -2.70 16 9 C -0.13 -3.65 5.61 29.85 0.17 -3.48 16 10 C 0.52 17.90 7.24 87.66 0.63 18.53 16 11 O -0.57 -23.61 12.29 -3.07 -0.04 -23.65 16 12 N -0.71 -22.10 3.75 -422.38 -1.59 -23.69 16 13 C 0.18 5.99 0.32 3.72 0.00 5.99 16 14 C 0.14 6.38 4.80 86.38 0.41 6.79 16 15 N -0.73 -37.36 5.21 -343.44 -1.79 -39.15 16 16 C -0.24 -14.12 9.99 84.03 0.84 -13.28 16 17 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 18 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 19 N -0.96 -57.50 13.06 21.65 0.28 -57.22 16 20 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 C -0.15 -4.34 4.82 30.68 0.15 -4.20 16 25 C 0.07 1.51 6.67 72.01 0.48 1.99 16 26 O -0.39 -9.99 10.77 -148.98 -1.60 -11.60 16 27 C 0.07 1.77 6.68 72.01 0.48 2.25 16 28 C -0.16 -4.64 4.81 30.68 0.15 -4.49 16 29 O -0.39 -9.18 10.32 -148.98 -1.54 -10.72 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.13 8.06 -2.39 -0.02 1.11 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.45 7.85 -2.39 -0.02 1.44 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 38 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 39 H 0.11 2.69 7.89 -2.38 -0.02 2.67 16 40 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.41 10.70 7.41 -92.71 -0.69 10.02 16 42 H 0.02 1.16 6.26 -2.39 -0.01 1.15 16 43 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.38 19.76 6.52 -92.71 -0.60 19.16 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 46 H 0.07 2.42 7.23 -2.38 -0.02 2.41 16 47 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.06 1.26 7.02 -2.39 -0.02 1.24 16 50 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.05 1.24 7.75 -2.38 -0.02 1.22 16 52 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.08 2.58 6.25 -2.38 -0.01 2.57 16 Total: -1.00 -70.58 407.54 0.62 -69.97 By element: Atomic # 1 Polarization: 45.82 SS G_CDS: -0.39 Total: 45.42 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 5.25 Total: 1.59 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -3.09 Total: -120.06 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -3.18 Total: -45.97 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -70.58 0.62 -69.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570310331.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.354 kcal (2) G-P(sol) polarization free energy of solvation -70.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds