Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46682 * 2 1 4 4 C 1.50703 * 109.47081 * 120.00084 * 2 1 3 5 5 O 1.21281 * 119.99504 * 120.00031 * 4 2 1 6 6 N 1.34775 * 120.00085 * 299.99619 * 4 2 1 7 7 C 1.46500 * 120.00169 * 180.02562 * 6 4 2 8 8 H 1.09004 * 109.47001 * 325.00202 * 7 6 4 9 9 C 1.52995 * 109.46702 * 84.99854 * 7 6 4 10 10 C 1.53006 * 109.46811 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46889 * 300.00204 * 10 9 7 12 12 C 1.52996 * 109.47070 * 60.00466 * 11 10 9 13 13 H 1.09004 * 109.47527 * 59.99553 * 12 11 10 14 14 C 1.52995 * 109.47247 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47133 * 205.00358 * 7 6 4 16 16 H 1.08995 * 109.47056 * 300.00069 * 15 7 6 17 17 C 1.52999 * 109.47120 * 59.99998 * 15 7 6 18 18 N 1.46496 * 109.46807 * 240.00054 * 2 1 3 19 19 C 1.36935 * 120.00443 * 304.30192 * 18 2 1 20 20 H 1.08002 * 119.99583 * 326.88648 * 19 18 2 21 21 C 1.38806 * 120.00288 * 146.88901 * 19 18 2 22 22 N 1.31619 * 120.00059 * 335.31532 * 21 19 18 23 23 Si 1.86799 * 120.00087 * 155.32363 * 21 19 18 24 24 H 1.48498 * 109.47165 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47100 * 119.99898 * 23 21 19 26 26 H 1.48507 * 109.46976 * 239.99487 * 23 21 19 27 27 C 1.46507 * 119.99990 * 124.30157 * 18 2 1 28 28 C 1.53004 * 109.46763 * 89.99898 * 27 18 2 29 29 C 1.50701 * 109.46700 * 180.02562 * 28 27 18 30 30 O 1.20822 * 120.00196 * 359.97438 * 29 28 27 31 31 O 1.34231 * 119.99668 * 179.97438 * 29 28 27 32 32 H 1.09001 * 109.47098 * 305.80314 * 1 2 3 33 33 H 1.09000 * 109.47359 * 65.80122 * 1 2 3 34 34 H 1.09002 * 109.46952 * 185.80579 * 1 2 3 35 35 H 0.97000 * 119.99731 * 0.02562 * 6 4 2 36 36 H 1.08992 * 109.47630 * 300.00201 * 9 7 6 37 37 H 1.09002 * 109.47004 * 60.01182 * 9 7 6 38 38 H 1.08995 * 109.47258 * 60.00383 * 10 9 7 39 39 H 1.08994 * 109.46968 * 180.02562 * 10 9 7 40 40 H 1.09002 * 109.46673 * 179.97438 * 11 10 9 41 41 H 1.08991 * 109.47506 * 299.99679 * 11 10 9 42 42 H 1.09001 * 109.47633 * 179.97438 * 14 12 11 43 43 H 1.09003 * 109.46902 * 299.99760 * 14 12 11 44 44 H 1.09004 * 109.47049 * 59.99472 * 14 12 11 45 45 H 1.09004 * 109.47310 * 59.99975 * 17 15 7 46 46 H 1.09004 * 109.46952 * 179.97438 * 17 15 7 47 47 H 1.08993 * 109.47297 * 299.99926 * 17 15 7 48 48 H 0.96997 * 120.00074 * 180.02562 * 22 21 19 49 49 H 1.08991 * 109.47309 * 209.99878 * 27 18 2 50 50 H 1.09004 * 109.46728 * 330.00058 * 27 18 2 51 51 H 1.09002 * 109.46774 * 299.99888 * 28 27 18 52 52 H 1.08994 * 109.47345 * 59.99990 * 28 27 18 53 53 H 0.96699 * 116.99535 * 179.97438 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1956 -0.9403 3.6508 8 1 2.2326 -2.0131 3.4615 9 6 3.5980 -0.4343 3.9942 10 6 4.1088 -1.1557 5.2431 11 6 3.1649 -0.8772 6.4147 12 6 1.7626 -1.3833 6.0712 13 1 1.7997 -2.4560 5.8815 14 6 0.8189 -1.1054 7.2430 15 6 1.2516 -0.6613 4.8220 16 1 1.2146 0.4114 5.0113 17 6 -0.1508 -1.1674 4.4785 18 7 2.0183 -0.6906 -1.1962 19 6 1.6164 -1.9731 -1.4584 20 1 1.4217 -2.6551 -0.6439 21 6 1.4594 -2.3967 -2.7709 22 7 1.2136 -1.5192 -3.7206 23 14 1.5968 -4.2120 -3.1893 24 1 1.8760 -4.9852 -1.9527 25 1 0.3211 -4.6797 -3.7887 26 1 2.7029 -4.4141 -4.1594 27 6 2.9366 -0.0091 -2.1120 28 6 4.3797 -0.2773 -1.6803 29 6 5.3243 0.4243 -2.6219 30 8 4.8880 1.0719 -3.5439 31 8 6.6503 0.3297 -2.4363 32 1 -0.3633 0.6012 0.8335 33 1 -0.3634 0.4212 -0.9373 34 1 -0.3633 -1.0224 0.1040 35 1 1.1489 0.5385 2.5436 36 1 4.2705 -0.6330 3.1597 37 1 3.5610 0.6385 4.1836 38 1 4.1460 -2.2283 5.0534 39 1 5.1077 -0.7949 5.4880 40 1 3.5286 -1.3915 7.3043 41 1 3.1278 0.1954 6.6044 42 1 -0.1804 -1.4655 6.9981 43 1 1.1829 -1.6196 8.1325 44 1 0.7817 -0.0327 7.4331 45 1 -0.1137 -2.2402 4.2892 46 1 -0.8232 -0.9690 5.3132 47 1 -0.5144 -0.6538 3.5885 48 1 1.1036 -1.8152 -4.6378 49 1 2.7846 -0.3834 -3.1242 50 1 2.7436 1.0635 -2.0884 51 1 4.5316 0.0972 -0.6679 52 1 4.5726 -1.3498 -1.7037 53 1 7.2161 0.7966 -3.0663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604714735.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -156.214564 kcal Electronic energy + Delta-G solvation = -31881.477200 eV Core-core repulsion = 27751.740969 eV Total energy + Delta-G solvation = -4129.736230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.25797 -41.07232 -39.60191 -37.58294 -36.96218 -35.28657 -34.01137 -33.81668 -33.15589 -31.39677 -29.90147 -27.90889 -26.85076 -26.43315 -25.32169 -23.78259 -22.24337 -21.93680 -21.54470 -21.22780 -20.37480 -19.17687 -18.62767 -17.64222 -17.29040 -17.13604 -16.90889 -16.52288 -15.97492 -15.71134 -15.52714 -15.40473 -15.17630 -15.10831 -14.72520 -14.48755 -14.13499 -14.00417 -13.67405 -13.57523 -13.42017 -13.21729 -12.97287 -12.93394 -12.76161 -12.70872 -12.68920 -12.56448 -12.50461 -12.37946 -12.32480 -11.98360 -11.91227 -11.81444 -11.73505 -11.61804 -11.52349 -11.31227 -11.21181 -10.95402 -10.61067 -10.32002 -9.76389 -8.63807 -7.83466 -5.35285 1.25254 1.39586 1.45421 1.55842 2.00980 2.17528 2.40274 2.56402 3.27543 3.63299 3.68116 3.80875 3.91083 4.13240 4.14912 4.22046 4.24041 4.29758 4.40863 4.49622 4.51151 4.54121 4.57231 4.59829 4.68437 4.73054 4.78285 4.82010 4.90549 4.96954 5.01864 5.03946 5.11487 5.13774 5.18182 5.21097 5.22593 5.29896 5.31056 5.39836 5.42852 5.55500 5.57465 5.60605 5.64218 5.73463 5.81976 5.85467 6.46220 6.84900 7.05541 7.16419 7.63102 7.85363 8.32004 9.14601 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.003494 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.831976 B = 8012.012487 C = 9281.924566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.144 3.856 3 H 0.100 0.900 4 C 0.497 3.503 5 O -0.565 6.565 6 N -0.718 5.718 7 C 0.153 3.847 8 H 0.046 0.954 9 C -0.123 4.123 10 C -0.115 4.115 11 C -0.108 4.108 12 C -0.084 4.084 13 H 0.056 0.944 14 C -0.143 4.143 15 C -0.081 4.081 16 H 0.092 0.908 17 C -0.148 4.148 18 N -0.569 5.569 19 C -0.228 4.228 20 H 0.047 0.953 21 C -0.035 4.035 22 N -0.908 5.908 23 Si 0.938 3.062 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.291 1.291 27 C 0.158 3.842 28 C -0.118 4.118 29 C 0.490 3.510 30 O -0.547 6.547 31 O -0.514 6.514 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.409 0.591 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.249 0.751 49 H 0.077 0.923 50 H 0.041 0.959 51 H 0.097 0.903 52 H 0.084 0.916 53 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 7.385 21.229 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.033 3.967 3 H 0.117 0.883 4 C 0.282 3.718 5 O -0.442 6.442 6 N -0.372 5.372 7 C 0.048 3.952 8 H 0.064 0.936 9 C -0.161 4.161 10 C -0.153 4.153 11 C -0.145 4.145 12 C -0.103 4.103 13 H 0.074 0.926 14 C -0.200 4.200 15 C -0.099 4.099 16 H 0.111 0.889 17 C -0.205 4.205 18 N -0.287 5.287 19 C -0.358 4.358 20 H 0.064 0.936 21 C -0.232 4.232 22 N -0.553 5.553 23 Si 0.767 3.233 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.218 1.218 27 C 0.031 3.969 28 C -0.158 4.158 29 C 0.334 3.666 30 O -0.438 6.438 31 O -0.327 6.327 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.245 0.755 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.059 0.941 51 H 0.116 0.884 52 H 0.102 0.898 53 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 2.389 6.610 20.984 22.130 hybrid contribution 0.423 -0.821 -1.355 1.640 sum 2.811 5.789 19.629 20.657 Atomic orbital electron populations 1.21854 0.93836 1.01141 1.01844 1.20638 0.95276 0.95468 0.85326 0.88250 1.22226 0.79251 0.84581 0.85713 1.90638 1.38914 1.27556 1.87046 1.46097 1.54119 1.32407 1.04574 1.20902 0.93724 0.96000 0.84600 0.93572 1.21848 0.95771 1.00973 0.97556 1.21482 0.99567 0.99731 0.94564 1.21590 0.93678 1.02019 0.97259 1.21127 0.95491 0.99276 0.94448 0.92583 1.21837 0.98971 1.02310 0.96918 1.21364 0.93989 1.01582 0.93007 0.88935 1.21878 0.96278 1.00341 1.01996 1.43696 1.48889 1.13290 1.22801 1.18903 1.38889 0.87538 0.90493 0.93557 1.25480 1.00736 0.99749 0.97215 1.70115 1.50438 1.33952 1.00801 0.85674 0.77106 0.83084 0.77427 1.20527 1.21479 1.21780 1.20710 0.84457 0.94524 0.97193 1.22006 0.95060 1.00845 0.97914 1.23771 0.81949 0.77163 0.83729 1.90678 1.78751 1.41188 1.33144 1.84556 1.18399 1.71376 1.58415 0.89473 0.93351 0.94711 0.75494 0.94694 0.90437 0.93430 0.91011 0.90953 0.90664 0.92272 0.92190 0.91704 0.94586 0.90499 0.92670 0.94109 0.90485 0.94095 0.88439 0.89789 0.71574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.84 71.98 0.64 -3.78 16 2 C 0.14 5.45 3.17 44.25 0.14 5.59 16 3 H 0.10 3.23 7.77 -2.39 -0.02 3.21 16 4 C 0.50 18.34 6.98 87.66 0.61 18.95 16 5 O -0.56 -26.49 14.65 -3.03 -0.04 -26.53 16 6 N -0.72 -18.77 4.29 -442.54 -1.90 -20.67 16 7 C 0.15 3.73 1.90 44.99 0.09 3.82 16 8 H 0.05 1.50 7.58 -2.38 -0.02 1.48 16 9 C -0.12 -2.80 5.49 30.59 0.17 -2.63 16 10 C -0.12 -2.16 5.92 30.60 0.18 -1.98 16 11 C -0.11 -1.52 5.20 30.60 0.16 -1.36 16 12 C -0.08 -1.28 2.25 -10.78 -0.02 -1.31 16 13 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 14 C -0.14 -1.63 8.84 71.98 0.64 -1.00 16 15 C -0.08 -1.37 1.83 -10.78 -0.02 -1.39 16 16 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 17 C -0.15 -2.64 8.68 71.98 0.62 -2.01 16 18 N -0.57 -27.37 2.15 -682.20 -1.47 -28.84 16 19 C -0.23 -12.52 7.69 84.03 0.65 -11.88 16 20 H 0.05 2.74 7.06 -2.91 -0.02 2.72 16 21 C -0.03 -1.97 4.91 84.86 0.42 -1.55 16 22 N -0.91 -53.21 11.37 21.65 0.25 -52.96 16 23 Si 0.94 46.71 29.62 68.60 2.03 48.75 16 24 H -0.28 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 27 C 0.16 7.48 4.57 86.38 0.39 7.87 16 28 C -0.12 -4.85 6.14 29.85 0.18 -4.66 16 29 C 0.49 18.32 8.33 71.24 0.59 18.91 16 30 O -0.55 -23.58 16.74 21.97 0.37 -23.21 16 31 O -0.51 -14.69 13.42 -51.43 -0.69 -15.38 16 32 H 0.09 2.09 7.73 -2.39 -0.02 2.08 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.03 1.36 7.77 -2.39 -0.02 1.35 16 35 H 0.41 7.93 7.92 -92.71 -0.73 7.20 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.08 1.06 6.43 -2.39 -0.02 1.05 16 47 H 0.05 1.03 7.44 -2.39 -0.02 1.01 16 48 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 49 H 0.08 4.32 5.28 -2.39 -0.01 4.30 16 50 H 0.04 1.84 7.84 -2.38 -0.02 1.82 16 51 H 0.10 3.68 8.14 -2.39 -0.02 3.67 16 52 H 0.08 3.79 8.14 -2.39 -0.02 3.77 16 53 H 0.42 7.62 9.10 -74.06 -0.67 6.95 16 Total: -1.00 -73.96 414.99 3.47 -70.49 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.50 Total: 26.79 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 5.43 Total: 21.58 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -3.12 Total: -102.47 kcal Atomic # 8 Polarization: -64.76 SS G_CDS: -0.37 Total: -65.13 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.75 kcal Total: -73.96 3.47 -70.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604714735.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.725 kcal (2) G-P(sol) polarization free energy of solvation -73.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds