Wall clock time and date at job start Sat Apr 11 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47576 * 2 1 4 4 C 1.50702 * 109.47116 * 240.00328 * 2 1 3 5 5 O 1.21279 * 119.99841 * 240.00437 * 4 2 1 6 6 N 1.34779 * 119.99786 * 59.99577 * 4 2 1 7 7 C 1.46505 * 119.99704 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.47002 * 325.00487 * 7 6 4 9 9 C 1.52998 * 109.47214 * 85.00131 * 7 6 4 10 10 C 1.53000 * 109.47107 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47065 * 300.00182 * 10 9 7 12 12 C 1.52998 * 109.47307 * 59.99940 * 11 10 9 13 13 H 1.09002 * 109.46846 * 59.99689 * 12 11 10 14 14 C 1.52999 * 109.47307 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.46941 * 205.00303 * 7 6 4 16 16 H 1.09001 * 109.47263 * 60.00028 * 15 7 6 17 17 C 1.52996 * 109.47023 * 300.00049 * 15 7 6 18 18 N 1.46500 * 109.47360 * 120.00251 * 2 1 3 19 19 C 1.36936 * 119.99735 * 59.99485 * 18 2 1 20 20 H 1.08005 * 119.99852 * 33.19303 * 19 18 2 21 21 C 1.38819 * 120.00172 * 213.18819 * 19 18 2 22 22 N 1.31620 * 119.99727 * 22.67253 * 21 19 18 23 23 Si 1.86800 * 120.00052 * 202.67670 * 21 19 18 24 24 H 1.48495 * 109.47072 * 89.99854 * 23 21 19 25 25 H 1.48504 * 109.46712 * 210.00243 * 23 21 19 26 26 H 1.48498 * 109.47231 * 329.99804 * 23 21 19 27 27 C 1.46501 * 120.00291 * 240.00129 * 18 2 1 28 28 C 1.53002 * 109.46660 * 275.49165 * 27 18 2 29 29 C 1.50704 * 109.46864 * 179.97438 * 28 27 18 30 30 O 1.20822 * 120.00067 * 359.97438 * 29 28 27 31 31 O 1.34231 * 119.99900 * 180.02562 * 29 28 27 32 32 H 1.09000 * 109.47576 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46874 * 300.00042 * 1 2 3 34 34 H 1.09004 * 109.47215 * 59.99661 * 1 2 3 35 35 H 0.96988 * 120.00307 * 0.02562 * 6 4 2 36 36 H 1.09005 * 109.46973 * 300.00294 * 9 7 6 37 37 H 1.09007 * 109.46795 * 59.99780 * 9 7 6 38 38 H 1.09001 * 109.47013 * 180.02562 * 10 9 7 39 39 H 1.08995 * 109.47068 * 60.00053 * 10 9 7 40 40 H 1.09002 * 109.47422 * 299.99982 * 11 10 9 41 41 H 1.09005 * 109.46792 * 180.02562 * 11 10 9 42 42 H 1.08998 * 109.46824 * 180.02562 * 14 12 11 43 43 H 1.09005 * 109.46792 * 300.00207 * 14 12 11 44 44 H 1.08995 * 109.47072 * 59.99929 * 14 12 11 45 45 H 1.08992 * 109.47535 * 60.00187 * 17 15 7 46 46 H 1.09005 * 109.46907 * 180.02562 * 17 15 7 47 47 H 1.09000 * 109.46819 * 299.99609 * 17 15 7 48 48 H 0.96996 * 120.00093 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.47174 * 155.49606 * 27 18 2 50 50 H 1.08999 * 109.46688 * 35.48876 * 27 18 2 51 51 H 1.09002 * 109.47305 * 60.00099 * 28 27 18 52 52 H 1.08991 * 109.47352 * 299.99629 * 28 27 18 53 53 H 0.96700 * 116.99778 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7066 -0.2498 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 1 3.1936 -1.3333 -3.4616 9 6 1.2500 -2.0943 -3.9944 10 6 1.7592 -2.8154 -5.2441 11 6 1.8104 -1.8320 -6.4151 12 6 2.7549 -0.6785 -6.0715 13 1 3.7541 -1.0710 -5.8826 14 6 2.8056 0.3052 -7.2422 15 6 2.2462 0.0423 -4.8221 16 1 2.9191 0.8641 -4.5773 17 6 0.8438 0.5933 -5.0876 18 7 2.0184 -0.6906 1.1961 19 6 1.6875 -2.0016 1.4128 20 1 1.5646 -2.6730 0.5757 21 6 1.5101 -2.4678 2.7083 22 7 1.2155 -1.6258 3.6760 23 14 1.6895 -4.2900 3.0780 24 1 3.1014 -4.5871 3.4296 25 1 0.8087 -4.6530 4.2171 26 1 1.3011 -5.0786 1.8811 27 6 2.8606 0.0212 2.1605 28 6 4.3189 -0.0315 1.7005 29 6 5.1853 0.7013 2.6922 30 8 4.6874 1.2136 3.6666 31 8 6.5099 0.7858 2.4924 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.1493 0.5389 -2.5435 36 1 1.2132 -2.7946 -3.1599 37 1 0.2508 -1.7017 -4.1836 38 1 1.0860 -3.6370 -5.4891 39 1 2.7584 -3.2079 -5.0553 40 1 0.8112 -1.4395 -6.6039 41 1 2.1727 -2.3460 -7.3055 42 1 3.4788 1.1267 -6.9975 43 1 3.1681 -0.2083 -8.1328 44 1 1.8063 0.6976 -7.4306 45 1 0.4808 1.1073 -4.1977 46 1 0.8805 1.2933 -5.9224 47 1 0.1709 -0.2285 -5.3325 48 1 1.0912 -1.9515 4.5812 49 1 2.7710 -0.4506 3.1390 50 1 2.5380 1.0603 2.2271 51 1 4.4085 0.4403 0.7219 52 1 4.6415 -1.0705 1.6338 53 1 7.0242 1.2656 3.1560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604714739.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:51 Heat of formation + Delta-G solvation = -151.343290 kcal Electronic energy + Delta-G solvation = -31878.653067 eV Core-core repulsion = 27749.128071 eV Total energy + Delta-G solvation = -4129.524996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.33768 -41.13337 -39.77805 -37.58940 -36.95747 -35.31468 -33.91878 -33.46527 -33.11850 -31.33650 -29.92231 -28.10853 -26.79532 -26.58644 -25.38736 -23.84052 -22.82464 -22.16291 -21.52019 -20.87191 -19.51790 -19.14564 -18.61334 -17.63394 -17.31827 -17.16610 -16.94901 -16.58506 -16.22173 -15.92187 -15.60522 -15.47767 -15.24055 -14.90770 -14.59183 -14.34630 -14.19199 -13.98494 -13.79903 -13.55470 -13.39831 -13.23280 -13.15079 -12.96870 -12.79322 -12.70659 -12.68520 -12.49824 -12.47950 -12.34897 -12.24420 -12.05286 -11.91796 -11.87350 -11.62035 -11.53813 -11.52018 -11.24701 -11.06728 -10.94881 -10.58737 -10.32523 -9.78764 -8.63310 -7.83414 -5.35225 1.25954 1.41233 1.45488 1.53280 1.98657 2.17462 2.40080 2.56109 3.28877 3.63232 3.71422 3.78062 3.92962 4.12995 4.18978 4.21164 4.23720 4.29751 4.39165 4.43667 4.44960 4.54152 4.56446 4.62031 4.67426 4.77210 4.80303 4.81338 4.88520 4.95956 5.02296 5.07819 5.08961 5.13781 5.18251 5.19934 5.23126 5.26233 5.34518 5.44080 5.47677 5.54046 5.54730 5.61349 5.71838 5.74365 5.81263 5.86189 6.47593 6.83149 7.06178 7.17275 7.61761 7.85385 8.31947 9.15869 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.003446 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.238897 B = 8124.357442 C = 9392.197905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.144 3.856 3 H 0.101 0.899 4 C 0.497 3.503 5 O -0.563 6.563 6 N -0.720 5.720 7 C 0.153 3.847 8 H 0.051 0.949 9 C -0.125 4.125 10 C -0.115 4.115 11 C -0.110 4.110 12 C -0.084 4.084 13 H 0.059 0.941 14 C -0.143 4.143 15 C -0.083 4.083 16 H 0.075 0.925 17 C -0.153 4.153 18 N -0.570 5.570 19 C -0.228 4.228 20 H 0.051 0.949 21 C -0.038 4.038 22 N -0.912 5.912 23 Si 0.942 3.058 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.160 3.840 28 C -0.121 4.121 29 C 0.490 3.510 30 O -0.547 6.547 31 O -0.514 6.514 32 H 0.033 0.967 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.408 0.592 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.249 0.751 49 H 0.078 0.922 50 H 0.037 0.963 51 H 0.101 0.899 52 H 0.085 0.915 53 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 8.110 -21.430 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.033 3.967 3 H 0.119 0.881 4 C 0.282 3.718 5 O -0.440 6.440 6 N -0.375 5.375 7 C 0.048 3.952 8 H 0.069 0.931 9 C -0.164 4.164 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.103 4.103 13 H 0.077 0.923 14 C -0.200 4.200 15 C -0.102 4.102 16 H 0.093 0.907 17 C -0.210 4.210 18 N -0.288 5.288 19 C -0.359 4.359 20 H 0.069 0.931 21 C -0.234 4.234 22 N -0.557 5.557 23 Si 0.771 3.229 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.033 3.967 28 C -0.161 4.161 29 C 0.334 3.666 30 O -0.438 6.438 31 O -0.327 6.327 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.245 0.755 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.055 0.945 51 H 0.119 0.881 52 H 0.103 0.897 53 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 2.081 7.298 -21.187 22.505 hybrid contribution 0.406 -0.805 1.377 1.646 sum 2.487 6.493 -19.810 20.995 Atomic orbital electron populations 1.21892 0.94119 1.01214 1.01757 1.20611 0.95118 0.95572 0.85390 0.88101 1.22173 0.79209 0.84658 0.85734 1.90639 1.38888 1.27431 1.87025 1.46191 1.54357 1.32336 1.04586 1.20862 0.96813 0.92879 0.84621 0.93077 1.21877 1.00052 0.97098 0.97347 1.21471 1.00825 0.98402 0.94589 1.21625 1.00518 0.95447 0.97088 1.21082 0.98788 0.95916 0.94547 0.92260 1.21835 1.02586 0.98609 0.96972 1.21297 0.99040 0.96772 0.93068 0.90657 1.22018 0.95191 1.01446 1.02308 1.43699 1.54060 1.09837 1.21238 1.19021 1.39916 0.85855 0.91086 0.93124 1.25543 1.00548 0.99983 0.97348 1.70100 1.50024 1.34606 1.00955 0.85661 0.77225 0.82883 0.77092 1.21812 1.21726 1.20405 1.20683 0.85062 0.94952 0.95959 1.22055 0.96300 1.00318 0.97426 1.23752 0.81255 0.76355 0.85244 1.90686 1.75276 1.46349 1.31484 1.84551 1.20328 1.72472 1.55370 0.94775 0.93120 0.89728 0.75471 0.95493 0.90425 0.91411 0.93250 0.90507 0.91009 0.92579 0.92196 0.91364 0.92411 0.90567 0.91771 0.94151 0.90374 0.94487 0.88088 0.89658 0.71557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.06 71.98 0.65 -3.91 16 2 C 0.14 5.48 3.17 44.24 0.14 5.62 16 3 H 0.10 3.27 7.87 -2.39 -0.02 3.25 16 4 C 0.50 18.53 6.96 87.66 0.61 19.14 16 5 O -0.56 -26.61 14.29 -3.03 -0.04 -26.65 16 6 N -0.72 -19.14 4.89 -442.52 -2.16 -21.31 16 7 C 0.15 3.78 2.15 44.99 0.10 3.88 16 8 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 9 C -0.13 -3.11 5.22 30.59 0.16 -2.95 16 10 C -0.11 -2.30 5.92 30.59 0.18 -2.12 16 11 C -0.11 -1.59 4.93 30.59 0.15 -1.44 16 12 C -0.08 -1.25 2.49 -10.81 -0.03 -1.27 16 13 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 14 C -0.14 -1.55 8.84 71.98 0.64 -0.92 16 15 C -0.08 -1.37 2.41 -10.81 -0.03 -1.40 16 16 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 17 C -0.15 -1.94 7.97 71.98 0.57 -1.37 16 18 N -0.57 -27.57 2.20 -682.20 -1.50 -29.07 16 19 C -0.23 -12.65 7.71 84.04 0.65 -12.00 16 20 H 0.05 3.02 6.68 -2.91 -0.02 3.00 16 21 C -0.04 -2.14 4.92 84.86 0.42 -1.72 16 22 N -0.91 -53.81 11.32 21.65 0.25 -53.57 16 23 Si 0.94 47.17 29.61 68.60 2.03 49.20 16 24 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 27 C 0.16 7.60 4.47 86.38 0.39 7.99 16 28 C -0.12 -4.86 6.13 29.85 0.18 -4.68 16 29 C 0.49 18.08 8.33 71.24 0.59 18.68 16 30 O -0.55 -23.56 16.74 21.98 0.37 -23.19 16 31 O -0.51 -14.37 13.42 -51.43 -0.69 -15.06 16 32 H 0.03 1.38 7.66 -2.39 -0.02 1.36 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 34 H 0.08 2.09 7.57 -2.38 -0.02 2.07 16 35 H 0.41 8.17 6.28 -92.72 -0.58 7.59 16 36 H 0.03 0.88 8.14 -2.38 -0.02 0.87 16 37 H 0.08 1.69 6.43 -2.38 -0.02 1.67 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 0.98 6.43 -2.39 -0.02 0.96 16 41 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.07 0.63 6.42 -2.39 -0.02 0.61 16 45 H 0.06 0.70 6.51 -2.39 -0.02 0.68 16 46 H 0.08 0.75 6.42 -2.38 -0.02 0.73 16 47 H 0.06 0.84 4.81 -2.39 -0.01 0.83 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 49 H 0.08 4.40 5.26 -2.39 -0.01 4.39 16 50 H 0.04 1.69 7.99 -2.39 -0.02 1.67 16 51 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 52 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 53 H 0.42 7.43 9.10 -74.06 -0.67 6.76 16 Total: -1.00 -74.53 405.35 3.29 -71.24 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.33 Total: 26.88 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 5.38 Total: 21.51 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.42 Total: -103.94 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -0.37 Total: -64.90 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -74.53 3.29 -71.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604714739.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.100 kcal (2) G-P(sol) polarization free energy of solvation -74.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds