Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00019 * 2 1 4 4 C 1.53000 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47254 * 65.00020 * 4 3 2 6 6 C 1.36931 * 120.00384 * 264.41870 * 5 4 3 7 7 H 1.07998 * 120.00358 * 146.29480 * 6 5 4 8 8 C 1.38820 * 120.00044 * 326.29524 * 6 5 4 9 9 N 1.31622 * 119.99497 * 337.22359 * 8 6 5 10 10 Si 1.86798 * 120.00038 * 157.21645 * 8 6 5 11 11 H 1.48498 * 109.47400 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46804 * 120.00285 * 10 8 6 13 13 H 1.48499 * 109.47221 * 240.00093 * 10 8 6 14 14 C 1.46503 * 119.99593 * 84.41052 * 5 4 3 15 15 C 1.53043 * 109.46184 * 240.00338 * 14 5 4 16 16 C 1.53192 * 109.31202 * 178.61909 * 15 14 5 17 17 N 1.46930 * 108.77590 * 54.63275 * 16 15 14 18 18 C 1.34776 * 120.62906 * 126.36980 * 17 16 15 19 19 O 1.21288 * 119.99936 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99874 * 180.02562 * 18 17 16 21 21 H 1.09000 * 110.75434 * 56.52742 * 20 18 17 22 22 C 1.55567 * 111.01403 * 292.94971 * 20 18 17 23 23 C 1.54940 * 100.82921 * 207.60878 * 22 20 18 24 24 O 1.43644 * 105.22148 * 36.44081 * 23 22 20 25 25 C 1.43231 * 109.97347 * 335.52552 * 24 23 22 26 26 H 1.09004 * 109.83355 * 121.22287 * 25 24 23 27 27 C 1.53000 * 109.82896 * 242.19617 * 25 24 23 28 28 C 1.46918 * 118.73976 * 306.64639 * 17 16 15 29 29 C 1.52761 * 109.01248 * 53.30570 * 28 17 16 30 30 H 1.09004 * 109.46607 * 299.99641 * 1 2 3 31 31 H 1.08994 * 109.47010 * 59.99350 * 1 2 3 32 32 H 1.08994 * 109.47329 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46787 * 60.00417 * 3 2 1 34 34 H 1.08995 * 109.47373 * 300.00485 * 3 2 1 35 35 H 1.09001 * 109.46830 * 305.00481 * 4 3 2 36 36 H 1.09000 * 109.47556 * 185.00383 * 4 3 2 37 37 H 0.97000 * 119.99157 * 179.97438 * 9 8 6 38 38 H 1.08993 * 109.46006 * 359.97438 * 14 5 4 39 39 H 1.08998 * 109.49378 * 58.66535 * 15 14 5 40 40 H 1.09001 * 109.52264 * 298.58678 * 15 14 5 41 41 H 1.09000 * 109.58476 * 294.84791 * 16 15 14 42 42 H 1.08997 * 109.58734 * 174.42608 * 16 15 14 43 43 H 1.08997 * 111.22244 * 89.70270 * 22 20 18 44 44 H 1.09001 * 111.13347 * 325.47260 * 22 20 18 45 45 H 1.09001 * 110.31121 * 277.47972 * 23 22 20 46 46 H 1.09005 * 110.31034 * 155.40741 * 23 22 20 47 47 H 1.08996 * 109.47413 * 58.54854 * 27 25 24 48 48 H 1.09007 * 109.47137 * 178.54638 * 27 25 24 49 49 H 1.08997 * 109.47555 * 298.54297 * 27 25 24 50 50 H 1.09002 * 109.59010 * 173.14584 * 28 17 16 51 51 H 1.09009 * 109.58728 * 293.56655 * 28 17 16 52 52 H 1.08996 * 109.56804 * 185.55137 * 29 28 17 53 53 H 1.09007 * 109.38306 * 65.51727 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2069 -0.7843 -1.3045 7 1 3.9973 -1.3337 -2.2104 8 6 4.7107 -1.4454 -0.1927 9 7 5.3760 -0.7765 0.7252 10 14 4.4443 -3.2841 0.0009 11 1 3.6722 -3.7973 -1.1591 12 1 5.7594 -3.9710 0.0626 13 1 3.6899 -3.5458 1.2530 14 6 4.1684 1.3871 -2.4495 15 6 3.2394 0.8950 -3.5617 16 6 3.4187 1.7790 -4.7998 17 7 4.8416 1.7971 -5.1660 18 6 5.2331 1.4786 -6.4156 19 8 4.4080 1.1729 -7.2503 20 6 6.6963 1.5013 -6.7755 21 1 7.2670 0.8497 -6.1139 22 6 7.2567 2.9521 -6.7416 23 6 8.4091 2.8432 -7.7716 24 8 7.9209 1.9573 -8.7915 25 6 6.9050 1.1034 -8.2526 26 1 5.9761 1.2385 -8.8067 27 6 7.3549 -0.3564 -8.3382 28 6 5.8298 2.1630 -4.1422 29 6 5.6231 1.2801 -2.9129 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8514 0.5681 0.8409 36 1 3.9786 2.1764 0.0890 37 1 5.7277 -1.2384 1.5022 38 1 3.9372 2.4265 -2.2167 39 1 2.2050 0.9496 -3.2223 40 1 3.4861 -0.1367 -3.8124 41 1 3.0860 2.7926 -4.5764 42 1 2.8340 1.3741 -5.6257 43 1 7.6369 3.2052 -5.7519 44 1 6.5053 3.6714 -7.0673 45 1 9.2988 2.4246 -7.3011 46 1 8.6313 3.8225 -8.1956 47 1 8.2885 -0.4817 -7.7899 48 1 6.5891 -0.9988 -7.9033 49 1 7.5075 -0.6290 -9.3825 50 1 6.8355 2.0113 -4.5344 51 1 5.6978 3.2087 -3.8640 52 1 6.2852 1.6087 -2.1119 53 1 5.8480 0.2447 -3.1691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670999328.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -120.888768 kcal Electronic energy + Delta-G solvation = -32099.969098 eV Core-core repulsion = 27971.764709 eV Total energy + Delta-G solvation = -4128.204389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.78248 -40.03739 -39.04469 -38.26567 -36.57561 -34.15867 -33.43356 -32.50581 -32.11802 -31.75236 -29.80455 -27.71554 -27.15524 -26.34584 -24.91270 -24.13597 -23.34745 -22.56513 -22.07793 -21.26544 -20.02690 -18.83761 -18.04802 -17.42231 -17.30455 -17.04542 -16.70391 -16.55834 -16.36386 -15.93247 -15.66748 -15.46394 -15.34866 -15.19659 -14.91461 -14.84427 -14.50276 -14.22029 -13.75340 -13.64576 -13.52685 -13.42171 -13.18547 -13.08268 -12.96252 -12.80990 -12.73947 -12.55689 -12.36479 -12.33554 -12.21997 -12.05734 -11.88650 -11.85828 -11.78017 -11.50439 -11.48811 -11.10880 -10.81091 -10.46978 -10.40109 -10.29698 -9.64641 -8.47015 -7.73201 -5.23220 1.43141 1.49079 1.52027 1.55681 1.96567 2.57913 2.78685 3.21973 3.35099 3.38186 3.47843 3.64194 3.70202 3.90919 4.09057 4.13813 4.18934 4.25927 4.29754 4.36821 4.38516 4.42708 4.46741 4.52923 4.61415 4.63289 4.64932 4.68024 4.71791 4.77830 4.82471 4.83103 4.85619 4.90746 4.92930 4.95884 5.02622 5.04871 5.13904 5.16875 5.20771 5.22362 5.46899 5.62543 5.69022 5.78400 5.89025 6.04010 6.40054 6.50507 6.69013 7.09262 7.29842 8.01740 8.47726 9.24946 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.003184 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.562364 B = 8792.936100 C = 9479.693657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.053 3.947 4 C 0.140 3.860 5 N -0.584 5.584 6 C -0.215 4.215 7 H 0.039 0.961 8 C -0.028 4.028 9 N -0.915 5.915 10 Si 0.932 3.068 11 H -0.281 1.281 12 H -0.295 1.295 13 H -0.296 1.296 14 C 0.172 3.828 15 C -0.124 4.124 16 C 0.121 3.879 17 N -0.600 5.600 18 C 0.523 3.477 19 O -0.584 6.584 20 C -0.140 4.140 21 H 0.123 0.877 22 C -0.138 4.138 23 C 0.046 3.954 24 O -0.397 6.397 25 C 0.091 3.909 26 H 0.075 0.925 27 C -0.158 4.158 28 C 0.113 3.887 29 C -0.127 4.127 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.245 0.755 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.104 0.896 51 H 0.096 0.904 52 H 0.064 0.936 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 11.761 -10.098 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.026 4.026 4 C 0.014 3.986 5 N -0.303 5.303 6 C -0.346 4.346 7 H 0.057 0.943 8 C -0.224 4.224 9 N -0.561 5.561 10 Si 0.764 3.236 11 H -0.207 1.207 12 H -0.223 1.223 13 H -0.224 1.224 14 C 0.066 3.934 15 C -0.165 4.165 16 C -0.002 4.002 17 N -0.331 5.331 18 C 0.312 3.688 19 O -0.465 6.465 20 C -0.161 4.161 21 H 0.141 0.859 22 C -0.175 4.175 23 C -0.029 4.029 24 O -0.317 6.317 25 C 0.033 3.967 26 H 0.092 0.908 27 C -0.215 4.215 28 C -0.010 4.010 29 C -0.167 4.167 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.139 0.861 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.122 0.878 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.122 0.878 51 H 0.114 0.886 52 H 0.083 0.917 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.980 11.378 -10.577 15.660 hybrid contribution -0.734 -1.452 0.797 1.812 sum 1.246 9.926 -9.779 13.990 Atomic orbital electron populations 1.22800 0.81672 1.02483 1.00037 1.88124 1.19512 1.29042 1.95194 1.23307 0.97068 0.83803 0.98395 1.21000 0.89245 0.96583 0.91815 1.43917 1.75955 1.03847 1.06580 1.18736 1.33356 0.84430 0.98100 0.94334 1.25276 0.98115 0.99355 0.99625 1.70057 1.37540 1.35676 1.12822 0.85756 0.76691 0.84106 0.77068 1.20669 1.22293 1.22367 1.20514 0.92631 0.93833 0.86427 1.22158 1.00297 0.98572 0.95431 1.21575 0.81279 1.00656 0.96686 1.48174 1.08278 1.66586 1.10084 1.20586 0.91046 0.75510 0.81618 1.90651 1.55598 1.50493 1.49791 1.22951 0.92929 1.01395 0.98806 0.85905 1.23431 0.98381 0.92889 1.02817 1.23599 0.96216 0.94871 0.88239 1.88415 1.55667 1.51186 1.36437 1.22512 0.91335 0.91119 0.91722 0.90756 1.22085 1.01916 0.94442 1.03084 1.21993 0.92338 0.99645 0.86980 1.22081 0.98707 0.99193 0.96727 0.93518 0.93880 0.90221 0.93681 0.94128 0.91086 0.92903 0.94517 0.91180 0.91991 0.94901 0.89298 0.90951 0.86126 0.90178 0.90311 0.87766 0.91093 0.92257 0.91462 0.87834 0.88630 0.91690 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.69 10.44 -148.98 -1.56 -18.25 16 3 C 0.05 1.95 6.28 71.98 0.45 2.40 16 4 C 0.14 6.03 5.57 86.38 0.48 6.51 16 5 N -0.58 -26.07 2.35 -677.88 -1.59 -27.66 16 6 C -0.22 -11.23 8.06 84.04 0.68 -10.55 16 7 H 0.04 2.14 6.87 -2.91 -0.02 2.12 16 8 C -0.03 -1.50 4.90 84.86 0.42 -1.08 16 9 N -0.91 -51.37 11.36 21.65 0.25 -51.13 16 10 Si 0.93 45.92 29.61 68.60 2.03 47.95 16 11 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 12 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 13 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 14 C 0.17 6.07 2.60 45.02 0.12 6.19 16 15 C -0.12 -4.24 5.30 30.67 0.16 -4.07 16 16 C 0.12 3.38 6.43 86.36 0.56 3.93 16 17 N -0.60 -15.74 2.98 -819.73 -2.44 -18.18 16 18 C 0.52 14.74 7.08 87.66 0.62 15.36 16 19 O -0.58 -20.86 14.83 -3.06 -0.05 -20.91 16 20 C -0.14 -2.98 1.88 -10.19 -0.02 -3.00 16 21 H 0.12 2.39 7.25 -2.39 -0.02 2.37 16 22 C -0.14 -2.05 5.83 32.14 0.19 -1.86 16 23 C 0.05 0.70 7.77 72.65 0.56 1.26 16 24 O -0.40 -9.12 11.02 -148.98 -1.64 -10.76 16 25 C 0.09 2.19 3.61 31.06 0.11 2.30 16 26 H 0.07 2.17 6.79 -2.38 -0.02 2.15 16 27 C -0.16 -3.50 9.44 71.98 0.68 -2.82 16 28 C 0.11 2.48 5.68 86.22 0.49 2.97 16 29 C -0.13 -4.10 5.29 30.53 0.16 -3.94 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 3.69 5.35 -2.39 -0.01 3.68 16 36 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 37 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 38 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.03 1.34 7.03 -2.39 -0.02 1.32 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 2.24 7.00 -2.39 -0.02 2.22 16 43 H 0.12 1.16 6.71 -2.39 -0.02 1.15 16 44 H 0.08 1.28 8.04 -2.39 -0.02 1.26 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.10 1.79 4.60 -2.39 -0.01 1.78 16 51 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 52 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.04 1.47 7.71 -2.38 -0.02 1.45 16 Total: -1.00 -68.81 406.19 2.78 -66.03 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.88 Total: 17.25 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.91 Total: 15.65 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -3.79 Total: -96.97 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -3.24 Total: -49.91 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -68.81 2.78 -66.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670999328.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.858 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds