Wall clock time and date at job start Sat Apr 11 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 111.02091 * 2 1 4 4 C 1.54945 * 111.12374 * 235.78808 * 2 1 3 5 5 O 1.43650 * 105.13830 * 205.63546 * 4 2 1 6 6 C 1.43239 * 109.96813 * 24.42249 * 5 4 2 7 7 H 1.08999 * 109.83176 * 238.68678 * 6 5 4 8 8 C 1.50698 * 109.82728 * 117.80488 * 6 5 4 9 9 O 1.21284 * 120.00369 * 356.45657 * 8 6 5 10 10 N 1.34779 * 119.99982 * 176.45252 * 8 6 5 11 11 C 1.46929 * 120.63354 * 179.97438 * 10 8 6 12 12 C 1.53189 * 108.77918 * 233.63506 * 11 10 8 13 13 C 1.53037 * 109.31155 * 305.36408 * 12 11 10 14 14 O 1.42898 * 109.46129 * 181.38444 * 13 12 11 15 15 C 1.42906 * 113.99824 * 149.97432 * 14 13 12 16 16 C 1.53006 * 109.46752 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.46623 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46684 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99589 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00325 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99821 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99912 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00122 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47667 * 59.99420 * 23 21 19 25 25 H 1.48505 * 109.47237 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46896 * 299.99625 * 23 21 19 27 27 C 1.53045 * 109.52613 * 61.37054 * 13 12 11 28 28 C 1.46925 * 120.62900 * 0.02639 * 10 8 6 29 29 C 1.54385 * 107.58863 * 358.29326 * 6 5 4 30 30 H 1.09003 * 109.46610 * 182.76222 * 1 2 3 31 31 H 1.09000 * 109.47203 * 302.75925 * 1 2 3 32 32 H 1.08997 * 109.47128 * 62.76449 * 1 2 3 33 33 H 1.09000 * 110.31281 * 86.71522 * 4 2 1 34 34 H 1.09004 * 110.39755 * 324.58918 * 4 2 1 35 35 H 1.09000 * 109.58364 * 113.84260 * 11 10 8 36 36 H 1.09001 * 109.58289 * 353.41937 * 11 10 8 37 37 H 1.08994 * 109.50070 * 185.41479 * 12 11 10 38 38 H 1.09002 * 109.52650 * 65.33126 * 12 11 10 39 39 H 1.09004 * 109.46328 * 301.36052 * 13 12 11 40 40 H 1.08993 * 109.47732 * 60.00254 * 15 14 13 41 41 H 1.09000 * 109.47141 * 299.99893 * 15 14 13 42 42 H 1.09000 * 109.47050 * 299.99753 * 16 15 14 43 43 H 1.09001 * 109.46801 * 59.99865 * 16 15 14 44 44 H 1.09000 * 109.47486 * 299.99829 * 17 16 15 45 45 H 1.09001 * 109.47362 * 60.00551 * 17 16 15 46 46 H 0.96999 * 120.00080 * 0.02562 * 18 17 16 47 47 H 0.97000 * 120.00284 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.50009 * 58.58550 * 27 13 12 49 49 H 1.09010 * 109.49677 * 178.67425 * 27 13 12 50 50 H 1.08997 * 109.58564 * 246.15194 * 28 10 8 51 51 H 1.08997 * 109.59060 * 6.43885 * 28 10 8 52 52 H 1.09003 * 110.84842 * 96.83326 * 29 6 5 53 53 H 1.09005 * 110.84677 * 220.44735 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9210 1.0174 0.0000 4 6 2.0884 -0.8126 -1.1952 5 8 3.3898 -1.2522 -0.7747 6 6 3.4510 -1.3011 0.6555 7 1 4.2477 -0.6492 1.0140 8 6 3.7057 -2.7158 1.1081 9 8 3.7605 -3.6126 0.2935 10 7 3.8728 -2.9844 2.4183 11 6 4.1213 -4.3586 2.8750 12 6 3.0925 -4.7136 3.9531 13 6 3.1416 -3.6632 5.0650 14 8 2.2057 -4.0088 6.0880 15 6 2.5873 -3.5755 7.3953 16 6 1.5181 -3.9980 8.4049 17 6 1.9270 -3.5347 9.8045 18 7 0.9029 -3.9387 10.7712 19 6 1.0538 -3.6315 12.0971 20 1 1.9275 -3.0910 12.4301 21 6 0.0838 -4.0147 13.0131 22 7 -0.9812 -4.6729 12.6071 23 14 0.2892 -3.5950 14.8216 24 1 0.3713 -2.1210 14.9816 25 1 -0.8753 -4.1112 15.5850 26 1 1.5348 -4.2188 15.3361 27 6 2.7838 -2.2913 4.4888 28 6 3.8087 -1.9088 3.4170 29 6 2.0898 -0.8148 1.1977 30 1 -0.3632 -1.0265 0.0495 31 1 -0.3633 0.5561 0.8642 32 1 -0.3633 0.4703 -0.9137 33 1 2.1702 -0.1790 -2.0784 34 1 1.4486 -1.6702 -1.4036 35 1 5.1261 -4.4292 3.2914 36 1 4.0224 -5.0463 2.0351 37 1 3.3244 -5.6942 4.3685 38 1 2.0953 -4.7315 3.5133 39 1 4.1457 -3.6287 5.4879 40 1 2.6869 -2.4902 7.4038 41 1 3.5408 -4.0300 7.6647 42 1 0.5645 -3.5439 8.1356 43 1 1.4190 -5.0835 8.3963 44 1 2.8805 -3.9891 10.0736 45 1 2.0264 -2.4493 9.8134 46 1 0.1184 -4.4244 10.4721 47 1 -1.6589 -4.9411 13.2472 48 1 1.7897 -2.3317 4.0436 49 1 2.7960 -1.5476 5.2857 50 1 4.7880 -1.7792 3.8778 51 1 3.5061 -0.9795 2.9344 52 1 1.4406 -1.6591 1.4297 53 1 2.2256 -0.1770 2.0712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675153443.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:32 Heat of formation + Delta-G solvation = -146.859865 kcal Electronic energy + Delta-G solvation = -29931.540795 eV Core-core repulsion = 25802.210214 eV Total energy + Delta-G solvation = -4129.330580 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85719 -40.22691 -39.26761 -37.71923 -36.81060 -34.63947 -34.31342 -33.37146 -32.35825 -31.35513 -30.75248 -27.40352 -27.07213 -26.06117 -24.60761 -24.36681 -23.65314 -22.47967 -22.09559 -21.44684 -20.02728 -19.13117 -18.87505 -17.72161 -17.59070 -17.04793 -16.83787 -16.76132 -16.58216 -16.20202 -15.69385 -15.48815 -15.28237 -15.24461 -15.02595 -14.77359 -14.68581 -14.34926 -14.17139 -13.85009 -13.71572 -13.47349 -13.36957 -13.20006 -12.92704 -12.82833 -12.66124 -12.45869 -12.43652 -12.28541 -12.23858 -12.09946 -12.05590 -12.00123 -11.80432 -11.72748 -11.57140 -11.47645 -11.25755 -10.92976 -10.45466 -10.31516 -9.80570 -9.02412 -7.95588 -5.25845 1.44254 1.48056 1.51816 1.58040 1.76301 2.50924 2.65987 2.82564 3.22597 3.37915 3.43344 3.65477 3.73152 3.81148 3.90061 3.97516 3.99644 4.04911 4.10234 4.13269 4.27188 4.28066 4.30350 4.38345 4.41234 4.50881 4.57198 4.60436 4.65486 4.70258 4.71658 4.73243 4.77138 4.80348 4.81501 4.82412 4.85755 4.94887 5.01501 5.11319 5.19307 5.24483 5.33848 5.34316 5.35117 5.44888 5.48857 5.82107 6.25694 6.27722 6.35206 7.04876 7.31928 8.07649 8.30322 9.28023 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.001674 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.204780 B =16718.699868 C =17538.030991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.112 0.888 4 C 0.043 3.957 5 O -0.383 6.383 6 C 0.065 3.935 7 H 0.134 0.866 8 C 0.496 3.504 9 O -0.580 6.580 10 N -0.606 5.606 11 C 0.117 3.883 12 C -0.125 4.125 13 C 0.085 3.915 14 O -0.402 6.402 15 C 0.078 3.922 16 C -0.114 4.114 17 C 0.155 3.845 18 N -0.751 5.751 19 C -0.250 4.250 20 H 0.080 0.920 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.276 1.276 27 C -0.153 4.153 28 C 0.101 3.899 29 C -0.140 4.140 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.026 0.974 45 H 0.029 0.971 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.114 0.886 52 H 0.069 0.931 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.026 12.879 -27.736 32.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.130 0.870 4 C -0.033 4.033 5 O -0.302 6.302 6 C 0.004 3.996 7 H 0.152 0.848 8 C 0.285 3.715 9 O -0.459 6.459 10 N -0.341 5.341 11 C -0.006 4.006 12 C -0.163 4.163 13 C 0.028 3.972 14 O -0.322 6.322 15 C 0.001 3.999 16 C -0.152 4.152 17 C 0.029 3.971 18 N -0.393 5.393 19 C -0.382 4.382 20 H 0.098 0.902 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.201 1.201 25 H -0.222 1.222 26 H -0.202 1.202 27 C -0.192 4.192 28 C -0.020 4.020 29 C -0.178 4.178 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.047 0.953 46 H 0.204 0.796 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.114 0.886 50 H 0.115 0.885 51 H 0.132 0.868 52 H 0.088 0.912 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.153 12.334 -28.214 32.750 hybrid contribution -0.593 -0.575 1.043 1.331 sum 10.561 11.758 -27.171 31.433 Atomic orbital electron populations 1.21685 0.92779 1.02081 1.03407 1.22878 0.97542 1.00428 0.92634 0.87027 1.23741 0.83097 0.97571 0.98900 1.88489 1.33625 1.88593 1.19457 1.22857 1.01783 0.92041 0.82913 0.84827 1.21668 0.75523 0.92229 0.82060 1.90679 1.52227 1.49169 1.53819 1.48246 1.70463 1.09486 1.05874 1.21564 0.99025 0.82997 0.96985 1.21911 0.99726 0.99651 0.95047 1.22193 0.93056 0.94223 0.87762 1.87919 1.47989 1.79962 1.16323 1.22353 0.96805 0.99276 0.81450 1.21487 0.99253 1.01197 0.93293 1.20674 0.91561 0.97061 0.87787 1.42612 1.24010 1.68486 1.04233 1.19655 1.04209 1.29135 0.85175 0.90231 1.25669 0.96963 1.01667 1.02815 1.69827 1.11814 1.45638 1.34916 0.85135 0.76707 0.78011 0.79431 1.20102 1.22203 1.20220 1.22403 0.99955 0.97569 0.99262 1.22156 1.00796 0.90126 0.88918 1.23363 0.93033 1.00876 1.00491 0.93408 0.90883 0.91111 0.87680 0.93393 0.89095 0.90463 0.89709 0.92511 0.90259 0.91482 0.92093 0.92281 0.92601 0.95640 0.95319 0.79583 0.93949 0.91587 0.88635 0.88546 0.86794 0.91223 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.31 71.98 0.67 -0.37 16 2 C -0.12 -0.93 3.69 -9.34 -0.03 -0.96 16 3 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 4 C 0.04 0.58 7.26 72.65 0.53 1.11 16 5 O -0.38 -7.71 10.56 -130.19 -1.38 -9.08 16 6 C 0.06 0.92 3.06 30.32 0.09 1.01 16 7 H 0.13 1.11 7.73 -2.39 -0.02 1.09 16 8 C 0.50 10.26 6.97 87.66 0.61 10.87 16 9 O -0.58 -18.00 15.94 15.75 0.25 -17.75 16 10 N -0.61 -9.19 2.97 -818.99 -2.43 -11.63 16 11 C 0.12 1.88 6.43 86.36 0.56 2.44 16 12 C -0.12 -2.15 5.73 30.67 0.18 -1.98 16 13 C 0.09 1.39 2.57 30.62 0.08 1.47 16 14 O -0.40 -9.65 9.99 -148.98 -1.49 -11.13 16 15 C 0.08 1.83 5.75 71.98 0.41 2.24 16 16 C -0.11 -3.69 5.70 30.60 0.17 -3.51 16 17 C 0.16 6.05 6.26 86.38 0.54 6.60 16 18 N -0.75 -38.83 5.60 -343.44 -1.92 -40.76 16 19 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 22 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 23 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 C -0.15 -1.81 5.69 30.66 0.17 -1.64 16 28 C 0.10 0.82 5.96 86.35 0.51 1.33 16 29 C -0.14 -1.25 4.86 31.85 0.15 -1.10 16 30 H 0.05 0.47 8.10 -2.39 -0.02 0.45 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.78 8.03 -2.38 -0.02 0.76 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.60 7.00 -2.39 -0.02 1.58 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.05 7.79 -2.38 -0.02 1.03 16 40 H 0.07 1.32 7.84 -2.39 -0.02 1.31 16 41 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 47 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.10 0.93 7.84 -2.38 -0.02 0.91 16 50 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.11 0.40 4.01 -2.39 -0.01 0.39 16 52 H 0.07 0.88 7.70 -2.39 -0.02 0.86 16 53 H 0.13 0.35 6.68 -2.38 -0.02 0.34 16 Total: -1.00 -78.38 414.19 1.46 -76.92 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.17 Total: 25.18 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.95 Total: 0.20 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.08 Total: -112.24 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -2.61 Total: -37.96 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -78.38 1.46 -76.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675153443.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.943 kcal (2) G-P(sol) polarization free energy of solvation -78.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds