Wall clock time and date at job start Sat Apr 11 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.70248 * 2 1 4 4 C 1.53626 * 109.66379 * 120.58482 * 2 1 3 5 5 H 1.09004 * 109.65702 * 54.54566 * 4 2 1 6 6 N 1.46496 * 109.43508 * 294.42496 * 4 2 1 7 7 C 1.34775 * 120.00439 * 155.28748 * 6 4 2 8 8 O 1.21284 * 119.99924 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00319 * 179.97438 * 7 6 4 10 10 C 1.52998 * 109.47532 * 179.97438 * 9 7 6 11 11 O 1.42895 * 109.47470 * 179.97438 * 10 9 7 12 12 C 1.42894 * 114.00443 * 180.02562 * 11 10 9 13 13 C 1.53172 * 109.54551 * 269.56261 * 12 11 10 14 14 C 1.53095 * 109.16386 * 183.15027 * 13 12 11 15 15 O 1.42901 * 109.41691 * 57.60367 * 14 13 12 16 16 C 1.42892 * 114.10046 * 298.84561 * 15 14 13 17 17 C 1.53095 * 109.41586 * 61.15408 * 16 15 14 18 18 C 1.53036 * 109.24126 * 174.54776 * 4 2 1 19 19 C 1.53039 * 109.54094 * 298.51196 * 18 4 2 20 20 C 1.53194 * 109.30955 * 61.36698 * 19 18 4 21 21 N 1.46919 * 108.77599 * 305.36645 * 20 19 18 22 22 C 1.36944 * 120.63155 * 233.58594 * 21 20 19 23 23 H 1.07998 * 120.00218 * 149.69824 * 22 21 20 24 24 C 1.38811 * 119.99734 * 329.71104 * 22 21 20 25 25 N 1.31617 * 120.00198 * 145.08738 * 24 22 21 26 26 Si 1.86805 * 119.99783 * 325.08444 * 24 22 21 27 27 H 1.48497 * 109.47416 * 270.00468 * 26 24 22 28 28 H 1.48504 * 109.46853 * 30.00706 * 26 24 22 29 29 H 1.48504 * 109.46694 * 150.00204 * 26 24 22 30 30 H 1.08999 * 109.47021 * 180.35450 * 1 2 3 31 31 H 1.08994 * 109.47311 * 300.35935 * 1 2 3 32 32 H 1.09005 * 109.46654 * 60.35998 * 1 2 3 33 33 H 0.97004 * 119.99610 * 335.28083 * 6 4 2 34 34 H 1.09008 * 109.47596 * 300.00604 * 9 7 6 35 35 H 1.09007 * 109.47119 * 59.99806 * 9 7 6 36 36 H 1.08994 * 109.47458 * 300.00992 * 10 9 7 37 37 H 1.09004 * 109.46312 * 60.00208 * 10 9 7 38 38 H 1.09005 * 109.53928 * 29.83079 * 12 11 10 39 39 H 1.08997 * 109.52217 * 303.05479 * 13 12 11 40 40 H 1.08997 * 109.52625 * 63.24120 * 13 12 11 41 41 H 1.09005 * 109.48027 * 297.62281 * 14 13 12 42 42 H 1.09003 * 109.48948 * 177.59795 * 14 13 12 43 43 H 1.08999 * 109.48204 * 301.17668 * 16 15 14 44 44 H 1.09002 * 109.49506 * 181.14421 * 16 15 14 45 45 H 1.09004 * 109.52287 * 182.48781 * 17 16 15 46 46 H 1.09000 * 109.52311 * 62.29866 * 17 16 15 47 47 H 1.09004 * 109.45792 * 178.49110 * 18 4 2 48 48 H 1.08998 * 109.45941 * 58.54123 * 18 4 2 49 49 H 1.09001 * 109.49798 * 301.41625 * 19 18 4 50 50 H 1.08996 * 109.49750 * 181.31714 * 19 18 4 51 51 H 1.08997 * 109.58568 * 185.57741 * 20 19 18 52 52 H 1.08997 * 109.58636 * 65.15238 * 20 19 18 53 53 H 0.96996 * 120.00138 * 355.11194 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7361 1.2454 5 1 1.6096 -1.7336 1.2897 6 7 1.6731 0.0154 2.4461 7 6 1.5565 -0.6192 3.6293 8 8 1.7607 -1.8127 3.7000 9 6 1.1724 0.1539 4.8645 10 6 1.1100 -0.7961 6.0621 11 8 0.7464 -0.0629 7.2334 12 6 0.6600 -0.8611 8.4155 13 6 -0.7680 -1.3927 8.5716 14 6 -0.8706 -2.1807 9.8802 15 8 -0.5008 -1.3372 10.9729 16 6 0.8402 -0.8485 10.9049 17 6 1.0116 -0.0071 9.6375 18 6 3.5711 -0.8497 1.1677 19 6 3.9615 -1.6628 -0.0686 20 6 3.4657 -0.9421 -1.3262 21 7 2.0227 -0.6996 -1.1944 22 6 1.1538 -1.1128 -2.1689 23 1 0.1432 -1.3911 -1.9087 24 6 1.5720 -1.1741 -3.4911 25 7 1.1158 -2.1217 -4.2824 26 14 2.7825 0.0884 -4.1472 27 1 2.0375 1.2496 -4.6965 28 1 3.6679 0.5444 -3.0457 29 1 3.6044 -0.5254 -5.2211 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8933 33 1 1.5095 0.9699 2.3894 34 1 1.9150 0.9292 5.0535 35 1 0.1959 0.6149 4.7156 36 1 0.3673 -1.5711 5.8729 37 1 2.0864 -1.2574 6.2111 38 1 1.3558 -1.6970 8.3426 39 1 -1.4674 -0.5570 8.5938 40 1 -1.0070 -2.0467 7.7330 41 1 -0.2004 -3.0395 9.8410 42 1 -1.8955 -2.5254 10.0177 43 1 1.5328 -1.6898 10.8790 44 1 1.0480 -0.2334 11.7805 45 1 2.0454 0.3300 9.5611 46 1 0.3482 0.8567 9.6812 47 1 3.9442 -1.3478 2.0627 48 1 4.0065 0.1472 1.0992 49 1 3.5061 -2.6515 -0.0125 50 1 5.0460 -1.7631 -0.1105 51 1 3.6532 -1.5639 -2.2016 52 1 3.9878 0.0088 -1.4322 53 1 0.5434 -2.8184 -3.9248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676894903.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:35 Heat of formation + Delta-G solvation = -143.002325 kcal Electronic energy + Delta-G solvation = -30353.772284 eV Core-core repulsion = 26224.608980 eV Total energy + Delta-G solvation = -4129.163305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.20561 -40.58221 -39.44814 -38.43353 -35.96387 -34.50041 -34.02943 -33.50567 -32.30557 -32.12654 -31.03898 -27.95804 -26.50541 -25.78008 -24.87095 -24.49697 -23.40364 -22.33196 -21.54710 -21.39549 -20.96189 -19.05672 -18.51945 -17.54731 -17.39293 -17.27270 -16.96259 -16.77550 -16.32772 -16.28671 -15.92559 -15.81723 -15.46350 -15.18873 -15.14583 -14.89255 -14.69894 -14.43899 -14.26443 -14.05711 -13.74914 -13.39943 -13.33492 -13.04250 -12.98113 -12.77026 -12.69037 -12.51750 -12.34829 -12.15150 -12.11006 -11.99030 -11.85225 -11.81936 -11.59688 -11.38768 -11.34654 -11.11020 -10.93911 -10.69850 -10.52956 -10.38740 -10.02894 -8.97259 -8.51305 -5.41423 1.55492 1.59630 1.61920 1.78445 1.93277 2.64615 2.69285 2.93246 3.01942 3.44185 3.69280 3.71219 3.75687 3.85146 3.94467 3.95674 4.01686 4.05658 4.10527 4.16914 4.23771 4.26106 4.34946 4.41679 4.48071 4.52760 4.57624 4.66187 4.68931 4.73382 4.76507 4.78272 4.79429 4.84122 4.85534 4.95574 5.02086 5.05003 5.08115 5.09232 5.17428 5.19046 5.23428 5.36767 5.41327 5.59850 5.95675 6.14195 6.19422 6.31690 6.57508 6.94935 7.26486 7.66582 8.17669 8.84072 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.001846 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.235280 B =15162.095878 C =15413.791908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.162 3.838 3 H 0.059 0.941 4 C 0.144 3.856 5 H 0.046 0.954 6 N -0.706 5.706 7 C 0.515 3.485 8 O -0.590 6.590 9 C -0.127 4.127 10 C 0.081 3.919 11 O -0.388 6.388 12 C 0.083 3.917 13 C -0.177 4.177 14 C 0.062 3.938 15 O -0.402 6.402 16 C 0.060 3.940 17 C -0.149 4.149 18 C -0.109 4.109 19 C -0.130 4.130 20 C 0.135 3.865 21 N -0.606 5.606 22 C -0.339 4.339 23 H 0.036 0.964 24 C -0.052 4.052 25 N -0.941 5.941 26 Si 1.063 2.937 27 H -0.297 1.297 28 H -0.231 1.231 29 H -0.305 1.305 30 H 0.022 0.978 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.417 0.583 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.081 0.919 49 H 0.036 0.964 50 H 0.085 0.915 51 H 0.042 0.958 52 H 0.051 0.949 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 8.036 29.721 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.055 3.945 3 H 0.076 0.924 4 C 0.037 3.963 5 H 0.064 0.936 6 N -0.357 5.357 7 C 0.303 3.697 8 O -0.471 6.471 9 C -0.167 4.167 10 C 0.004 3.996 11 O -0.308 6.308 12 C 0.025 3.975 13 C -0.215 4.215 14 C -0.015 4.015 15 O -0.321 6.321 16 C -0.016 4.016 17 C -0.186 4.186 18 C -0.148 4.148 19 C -0.169 4.169 20 C 0.010 3.990 21 N -0.332 5.332 22 C -0.468 4.468 23 H 0.054 0.946 24 C -0.249 4.249 25 N -0.581 5.581 26 Si 0.889 3.111 27 H -0.225 1.225 28 H -0.155 1.155 29 H -0.232 1.232 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.254 0.746 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.133 0.867 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.055 0.945 50 H 0.103 0.897 51 H 0.061 0.939 52 H 0.069 0.931 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.247 7.942 28.563 29.824 hybrid contribution -1.221 -1.193 0.266 1.728 sum 2.026 6.749 28.828 29.677 Atomic orbital electron populations 1.21694 0.95179 1.00115 1.01287 1.20923 0.93853 0.94301 0.85374 0.92387 1.21364 0.95238 0.95257 0.84410 0.93572 1.45875 1.69723 1.13070 1.07059 1.20944 0.75860 0.87475 0.85413 1.90709 1.52356 1.17442 1.86547 1.21421 1.06516 0.99212 0.89515 1.22069 0.99409 0.93578 0.84567 1.87829 1.90418 1.36102 1.16418 1.22249 0.96107 0.93863 0.85257 1.22705 0.97994 1.01524 0.99297 1.22650 1.02247 0.91929 0.84628 1.87918 1.31103 1.67255 1.45824 1.22744 0.83259 0.97660 0.97939 1.22283 1.03717 0.99473 0.93154 1.21695 0.94857 1.00989 0.97257 1.21974 1.00979 0.98485 0.95493 1.21524 0.83729 0.97638 0.96124 1.44454 1.02743 1.66434 1.19533 1.19858 0.96380 1.42214 0.88335 0.94599 1.27238 1.03334 1.01085 0.93241 1.71014 1.34920 1.11654 1.40491 0.84016 0.75578 0.75084 0.76444 1.22503 1.15495 1.23249 0.95829 0.90228 0.93456 0.74598 0.85537 0.86166 0.93725 0.93137 0.91629 0.90885 0.90670 0.92119 0.87487 0.91955 0.86674 0.89114 0.90814 0.92616 0.90084 0.94542 0.89673 0.93918 0.93134 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.84 71.98 0.56 -3.88 16 2 C 0.16 5.75 3.05 45.12 0.14 5.89 16 3 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.14 4.63 2.02 45.21 0.09 4.72 16 5 H 0.05 1.89 7.58 -2.38 -0.02 1.87 16 6 N -0.71 -16.43 4.60 -441.48 -2.03 -18.46 16 7 C 0.52 12.77 7.79 87.66 0.68 13.46 16 8 O -0.59 -20.36 15.65 -3.04 -0.05 -20.41 16 9 C -0.13 -2.07 6.07 29.85 0.18 -1.89 16 10 C 0.08 1.55 5.04 71.98 0.36 1.92 16 11 O -0.39 -7.12 10.00 -148.98 -1.49 -8.60 16 12 C 0.08 1.27 2.70 30.71 0.08 1.35 16 13 C -0.18 -2.61 5.76 30.68 0.18 -2.43 16 14 C 0.06 0.79 6.84 72.01 0.49 1.29 16 15 O -0.40 -6.29 10.76 -148.98 -1.60 -7.89 16 16 C 0.06 0.65 6.84 72.01 0.49 1.15 16 17 C -0.15 -1.83 5.79 30.68 0.18 -1.65 16 18 C -0.11 -3.28 5.46 30.62 0.17 -3.12 16 19 C -0.13 -4.45 6.08 30.67 0.19 -4.26 16 20 C 0.13 5.44 4.37 86.36 0.38 5.82 16 21 N -0.61 -27.22 2.67 -674.44 -1.80 -29.02 16 22 C -0.34 -18.50 8.67 84.03 0.73 -17.77 16 23 H 0.04 2.16 6.45 -2.91 -0.02 2.15 16 24 C -0.05 -2.95 4.83 84.86 0.41 -2.54 16 25 N -0.94 -59.00 13.70 21.65 0.30 -58.70 16 26 Si 1.06 49.81 27.08 68.60 1.86 51.67 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.23 -9.25 4.73 99.48 0.47 -8.78 16 29 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 30 H 0.02 0.95 7.44 -2.39 -0.02 0.93 16 31 H 0.08 2.13 7.82 -2.39 -0.02 2.11 16 32 H 0.05 1.83 7.63 -2.38 -0.02 1.81 16 33 H 0.42 6.69 8.60 -92.71 -0.80 5.89 16 34 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.04 0.97 7.95 -2.39 -0.02 0.95 16 37 H 0.05 1.04 8.04 -2.38 -0.02 1.02 16 38 H 0.07 0.96 7.79 -2.38 -0.02 0.94 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.12 8.00 -2.39 -0.02 1.10 16 41 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 48 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 51 H 0.04 1.93 6.00 -2.39 -0.01 1.92 16 52 H 0.05 1.87 6.55 -2.39 -0.02 1.85 16 53 H 0.25 15.93 8.73 -92.71 -0.81 15.12 16 Total: -1.00 -73.37 405.13 0.31 -73.06 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.19 Total: 20.31 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 5.31 Total: -1.95 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -3.53 Total: -106.18 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -3.14 Total: -36.91 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 1.86 Total: 51.67 kcal Total: -73.37 0.31 -73.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676894903.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.938 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds