Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.58782 * 2 1 4 4 C 1.53191 * 109.58665 * 239.71808 * 2 1 3 5 5 H 1.08993 * 109.50212 * 65.59625 * 4 2 1 6 6 N 1.46502 * 109.49779 * 305.52588 * 4 2 1 7 7 C 1.34776 * 119.99989 * 155.00005 * 6 4 2 8 8 O 1.21281 * 119.99907 * 0.02562 * 7 6 4 9 9 C 1.50707 * 119.99979 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47033 * 180.02562 * 9 7 6 11 11 O 1.42900 * 109.47017 * 179.97438 * 10 9 7 12 12 C 1.42899 * 113.99898 * 179.97438 * 11 10 9 13 13 C 1.53181 * 109.54539 * 269.82388 * 12 11 10 14 14 C 1.53109 * 109.15419 * 183.24015 * 13 12 11 15 15 O 1.42900 * 109.48447 * 57.47925 * 14 13 12 16 16 C 1.42905 * 114.09843 * 298.88411 * 15 14 13 17 17 C 1.53095 * 109.41380 * 61.16010 * 16 15 14 18 18 C 1.53045 * 109.31175 * 185.57831 * 4 2 1 19 19 C 1.53040 * 109.53928 * 61.36589 * 18 4 2 20 20 C 1.53191 * 109.30830 * 298.63125 * 19 18 4 21 21 N 1.46925 * 109.58937 * 120.42838 * 2 1 3 22 22 C 1.36938 * 120.62932 * 353.41444 * 21 2 1 23 23 H 1.08000 * 119.99652 * 29.53956 * 22 21 2 24 24 C 1.38809 * 120.00313 * 209.53405 * 22 21 2 25 25 N 1.31621 * 119.99852 * 16.11719 * 24 22 21 26 26 Si 1.86800 * 120.00237 * 196.12014 * 24 22 21 27 27 H 1.48498 * 109.47475 * 94.02184 * 26 24 22 28 28 H 1.48505 * 109.47168 * 214.02437 * 26 24 22 29 29 H 1.48499 * 109.46888 * 334.02139 * 26 24 22 30 30 H 1.09005 * 109.46914 * 180.28251 * 1 2 3 31 31 H 1.08997 * 109.46850 * 300.27905 * 1 2 3 32 32 H 1.08994 * 109.47028 * 60.28863 * 1 2 3 33 33 H 0.96996 * 119.99771 * 334.99986 * 6 4 2 34 34 H 1.08995 * 109.47084 * 59.99997 * 9 7 6 35 35 H 1.08998 * 109.46590 * 299.99766 * 9 7 6 36 36 H 1.09001 * 109.46980 * 299.99992 * 10 9 7 37 37 H 1.08995 * 109.47419 * 59.99920 * 10 9 7 38 38 H 1.08998 * 109.54027 * 30.00327 * 12 11 10 39 39 H 1.09001 * 109.51906 * 303.05792 * 13 12 11 40 40 H 1.08999 * 109.51910 * 63.25162 * 13 12 11 41 41 H 1.08993 * 109.40731 * 297.49589 * 14 13 12 42 42 H 1.08994 * 109.48727 * 177.50745 * 14 13 12 43 43 H 1.09005 * 109.48351 * 301.17838 * 16 15 14 44 44 H 1.09001 * 109.49461 * 181.14933 * 16 15 14 45 45 H 1.09003 * 109.51995 * 182.48470 * 17 16 15 46 46 H 1.09001 * 109.57122 * 62.33231 * 17 16 15 47 47 H 1.09005 * 109.46041 * 181.38784 * 18 4 2 48 48 H 1.08995 * 109.46089 * 301.34289 * 18 4 2 49 49 H 1.09002 * 109.49756 * 178.68546 * 19 18 4 50 50 H 1.08994 * 109.49818 * 58.58693 * 19 18 4 51 51 H 1.08997 * 109.58947 * 294.84674 * 20 19 18 52 52 H 1.09005 * 109.58463 * 174.42630 * 20 19 18 53 53 H 0.97003 * 119.99749 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 1 1.7656 -0.1644 -2.1370 6 7 1.4514 -2.0663 -1.3097 7 6 1.3284 -2.6933 -2.4964 8 8 1.7083 -2.1495 -3.5118 9 6 0.7188 -4.0700 -2.5617 10 6 0.6979 -4.5501 -4.0142 11 8 0.1204 -5.8558 -4.0760 12 6 0.0527 -6.3995 -5.3958 13 6 -1.2809 -6.0116 -6.0420 14 6 -1.3788 -6.6651 -7.4231 15 8 -1.2491 -8.0820 -7.2902 16 6 -0.0014 -8.5043 -6.7361 17 6 0.1509 -7.9265 -5.3266 18 6 3.5675 -0.8465 -1.1712 19 6 3.9569 -1.6658 0.0614 20 6 3.4651 -0.9486 1.3225 21 7 2.0226 -0.7010 1.1936 22 6 1.1537 -1.1162 2.1672 23 1 0.1385 -1.3787 1.9086 24 6 1.5778 -1.1997 3.4862 25 7 2.6847 -0.5943 3.8612 26 14 0.5775 -2.1713 4.7292 27 1 1.1100 -3.5546 4.8204 28 1 0.6696 -1.5168 6.0590 29 1 -0.8423 -2.2150 4.2963 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5093 -0.8925 33 1 1.1479 -2.5013 -0.4976 34 1 -0.2999 -4.0349 -2.1756 35 1 1.3119 -4.7588 -1.9602 36 1 0.1051 -3.8613 -4.6161 37 1 1.7168 -4.5853 -4.4000 38 1 0.8754 -6.0079 -5.9941 39 1 -2.1033 -6.3591 -5.4168 40 1 -1.3337 -4.9278 -6.1459 41 1 -0.5808 -6.2853 -8.0610 42 1 -2.3446 -6.4289 -7.8696 43 1 0.8147 -8.1485 -7.3650 44 1 0.0252 -9.5929 -6.6875 45 1 1.1211 -8.2110 -4.9192 46 1 -0.6410 -8.3138 -4.6856 47 1 3.9379 -1.3421 -2.0686 48 1 4.0061 0.1487 -1.0991 49 1 5.0413 -1.7697 0.1015 50 1 3.4984 -2.6528 0.0019 51 1 3.9904 0.0002 1.4316 52 1 3.6519 -1.5744 2.1952 53 1 2.9812 -0.6530 4.7830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676894905.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -140.748008 kcal Electronic energy + Delta-G solvation = -30882.123982 eV Core-core repulsion = 26753.058432 eV Total energy + Delta-G solvation = -4129.065550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20525 -40.56581 -39.28512 -38.37611 -35.59585 -34.14756 -33.90337 -33.38378 -32.12517 -32.07834 -30.80337 -27.89941 -26.84493 -25.74932 -24.80472 -24.41281 -23.49409 -22.37457 -21.61732 -21.18911 -20.27749 -18.59964 -18.25405 -17.54520 -17.26438 -17.03940 -16.98583 -16.80583 -16.45708 -16.02945 -15.81573 -15.65566 -15.35986 -15.11900 -14.94097 -14.77488 -14.42093 -14.38223 -14.17926 -14.13417 -13.54456 -13.36688 -13.01142 -12.94506 -12.85900 -12.69324 -12.65563 -12.45350 -12.33046 -12.31021 -12.16195 -12.08544 -11.90405 -11.79515 -11.66481 -11.36722 -11.36059 -11.02461 -10.86298 -10.67367 -10.50079 -10.48935 -9.89194 -8.60391 -7.80986 -5.27406 1.50265 1.53050 1.59856 1.69522 2.06780 2.54614 2.79983 2.96674 3.35320 3.60070 3.73066 3.73854 3.81169 3.96664 3.99279 4.03728 4.06261 4.10553 4.19873 4.22739 4.25687 4.36733 4.40437 4.49726 4.57511 4.59965 4.67496 4.68795 4.75029 4.79614 4.80052 4.82143 4.86292 4.96007 5.00658 5.03775 5.05389 5.11470 5.14267 5.19537 5.24081 5.35696 5.47570 5.56344 5.66320 5.76086 5.80801 6.18395 6.21322 6.45262 6.69217 7.20361 7.31408 7.90588 8.43932 9.25625 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.002278 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.076374 B =12288.842860 C =13065.278598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.029 0.971 4 C 0.144 3.856 5 H 0.080 0.920 6 N -0.697 5.697 7 C 0.517 3.483 8 O -0.586 6.586 9 C -0.134 4.134 10 C 0.087 3.913 11 O -0.393 6.393 12 C 0.082 3.918 13 C -0.176 4.176 14 C 0.063 3.937 15 O -0.402 6.402 16 C 0.062 3.938 17 C -0.151 4.151 18 C -0.115 4.115 19 C -0.125 4.125 20 C 0.179 3.821 21 N -0.595 5.595 22 C -0.245 4.245 23 H 0.081 0.919 24 C -0.050 4.050 25 N -0.936 5.936 26 Si 0.959 3.041 27 H -0.289 1.289 28 H -0.305 1.305 29 H -0.265 1.265 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.055 0.945 51 H -0.007 1.007 52 H 0.054 0.946 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 -11.923 -20.118 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.046 0.954 4 C 0.037 3.963 5 H 0.098 0.902 6 N -0.347 5.347 7 C 0.305 3.695 8 O -0.468 6.468 9 C -0.173 4.173 10 C 0.010 3.990 11 O -0.313 6.313 12 C 0.025 3.975 13 C -0.214 4.214 14 C -0.014 4.014 15 O -0.321 6.321 16 C -0.014 4.014 17 C -0.188 4.188 18 C -0.153 4.153 19 C -0.165 4.165 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.246 4.246 25 N -0.583 5.583 26 Si 0.788 3.212 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.190 1.190 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.246 0.754 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.011 0.989 52 H 0.072 0.928 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.749 -11.734 -20.547 24.134 hybrid contribution 0.125 0.205 1.649 1.667 sum -4.623 -11.530 -18.898 22.615 Atomic orbital electron populations 1.21696 0.94166 1.01839 1.00766 1.20852 0.94589 0.93360 0.86295 0.95356 1.21294 0.92778 0.83723 0.98474 0.90237 1.45953 1.61309 1.18116 1.09354 1.20701 0.78057 0.87801 0.82952 1.90651 1.52146 1.68618 1.35357 1.21427 1.04383 0.93014 0.98499 1.22035 0.97514 0.83762 0.95715 1.87852 1.82822 1.31819 1.28763 1.22263 0.97081 0.94555 0.83628 1.22708 0.98542 1.01951 0.98241 1.22660 1.03549 0.80244 0.94952 1.87918 1.37923 1.22888 1.83401 1.22722 0.85986 1.01056 0.91646 1.22293 1.04026 0.93301 0.99217 1.21714 0.95647 1.00412 0.97567 1.21945 0.99677 0.99116 0.95721 1.20572 0.83391 0.95719 0.95023 1.44341 1.02893 1.65267 1.19447 1.19496 0.95540 1.36069 0.86405 0.90122 1.25783 0.99028 1.00919 0.98852 1.70189 1.26196 1.45393 1.16477 0.85379 0.79192 0.78193 0.78418 1.21622 1.23267 1.18967 0.92281 0.93560 0.91797 0.75371 0.86816 0.87111 0.92917 0.93060 0.91380 0.91153 0.90281 0.91915 0.87351 0.91756 0.86814 0.89405 0.91090 0.92530 0.91707 0.92109 0.92662 0.98853 0.92802 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.72 71.98 0.56 -3.70 16 2 C 0.16 5.83 3.20 44.97 0.14 5.97 16 3 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 4 C 0.14 4.72 2.33 45.07 0.10 4.83 16 5 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 6 N -0.70 -20.80 3.46 -442.15 -1.53 -22.33 16 7 C 0.52 14.72 7.80 87.66 0.68 15.41 16 8 O -0.59 -20.05 15.64 -3.03 -0.05 -20.10 16 9 C -0.13 -2.95 6.07 29.85 0.18 -2.77 16 10 C 0.09 1.91 5.04 71.98 0.36 2.27 16 11 O -0.39 -8.51 10.00 -148.98 -1.49 -10.00 16 12 C 0.08 1.42 2.69 30.71 0.08 1.51 16 13 C -0.18 -2.78 5.77 30.69 0.18 -2.60 16 14 C 0.06 0.83 6.84 72.02 0.49 1.33 16 15 O -0.40 -6.73 10.77 -148.98 -1.60 -8.33 16 16 C 0.06 0.77 6.84 72.01 0.49 1.27 16 17 C -0.15 -2.23 5.79 30.69 0.18 -2.05 16 18 C -0.11 -3.80 5.58 30.62 0.17 -3.62 16 19 C -0.13 -4.52 5.93 30.67 0.18 -4.34 16 20 C 0.18 8.10 5.29 86.36 0.46 8.55 16 21 N -0.60 -26.63 2.64 -675.24 -1.78 -28.41 16 22 C -0.24 -11.94 8.58 84.03 0.72 -11.22 16 23 H 0.08 3.73 6.22 -2.91 -0.02 3.71 16 24 C -0.05 -2.64 4.92 84.86 0.42 -2.22 16 25 N -0.94 -53.14 11.25 21.65 0.24 -52.90 16 26 Si 0.96 42.59 29.58 68.60 2.03 44.62 16 27 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 28 H -0.31 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 30 H 0.06 1.91 6.37 -2.38 -0.02 1.89 16 31 H 0.05 1.70 7.66 -2.39 -0.02 1.68 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 12.48 7.77 -92.71 -0.72 11.76 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.05 1.19 7.93 -2.39 -0.02 1.17 16 37 H 0.05 1.17 8.04 -2.39 -0.02 1.16 16 38 H 0.07 1.09 7.79 -2.39 -0.02 1.07 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.19 7.97 -2.39 -0.02 1.18 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.05 1.97 7.53 -2.39 -0.02 1.95 16 51 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 52 H 0.05 2.79 6.14 -2.38 -0.01 2.77 16 53 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -62.20 406.52 1.38 -60.82 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.16 Total: 28.03 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.40 Total: 8.60 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -3.07 Total: -103.64 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -3.14 Total: -38.43 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -62.20 1.38 -60.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676894905.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.928 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds