Wall clock time and date at job start Sat Apr 11 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.58667 * 2 1 4 4 C 1.53193 * 109.58758 * 120.28326 * 2 1 3 5 5 H 1.09000 * 109.49948 * 294.51625 * 4 2 1 6 6 N 1.46500 * 109.49836 * 54.61612 * 4 2 1 7 7 C 1.34776 * 120.00123 * 204.99991 * 6 4 2 8 8 O 1.21277 * 119.99894 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99774 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47029 * 180.02562 * 9 7 6 11 11 O 1.42899 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.42899 * 113.99681 * 179.97438 * 11 10 9 13 13 C 1.53177 * 109.54483 * 269.55565 * 12 11 10 14 14 C 1.53099 * 109.16188 * 183.15874 * 13 12 11 15 15 O 1.42897 * 109.41699 * 57.60840 * 14 13 12 16 16 C 1.42904 * 114.09589 * 298.84282 * 15 14 13 17 17 C 1.53089 * 109.41663 * 61.15917 * 16 15 14 18 18 C 1.53046 * 109.31085 * 174.56321 * 4 2 1 19 19 C 1.53033 * 109.53958 * 298.63507 * 18 4 2 20 20 C 1.53191 * 109.31177 * 61.36699 * 19 18 4 21 21 N 1.46925 * 109.70292 * 239.64756 * 2 1 3 22 22 C 1.36931 * 120.63548 * 6.55110 * 21 2 1 23 23 H 1.08002 * 119.99911 * 330.19921 * 22 21 2 24 24 C 1.38813 * 120.00441 * 150.19557 * 22 21 2 25 25 N 1.31615 * 119.99584 * 344.45947 * 24 22 21 26 26 Si 1.86797 * 120.00188 * 164.46465 * 24 22 21 27 27 H 1.48500 * 109.47184 * 90.00087 * 26 24 22 28 28 H 1.48503 * 109.46826 * 210.00081 * 26 24 22 29 29 H 1.48504 * 109.47133 * 329.99947 * 26 24 22 30 30 H 1.09005 * 109.46821 * 299.99680 * 1 2 3 31 31 H 1.08997 * 109.46887 * 60.00118 * 1 2 3 32 32 H 1.09002 * 109.46717 * 179.97438 * 1 2 3 33 33 H 0.97009 * 119.99939 * 25.00056 * 6 4 2 34 34 H 1.09004 * 109.46682 * 299.99523 * 9 7 6 35 35 H 1.08994 * 109.47074 * 59.99862 * 9 7 6 36 36 H 1.09004 * 109.46510 * 299.99672 * 10 9 7 37 37 H 1.09002 * 109.47567 * 59.99207 * 10 9 7 38 38 H 1.08995 * 109.54767 * 29.82757 * 12 11 10 39 39 H 1.09003 * 109.51934 * 303.05910 * 13 12 11 40 40 H 1.08995 * 109.52610 * 63.25303 * 13 12 11 41 41 H 1.09001 * 109.47583 * 297.62176 * 14 13 12 42 42 H 1.08998 * 109.47451 * 177.59412 * 14 13 12 43 43 H 1.08997 * 109.48216 * 301.17362 * 16 15 14 44 44 H 1.09008 * 109.49095 * 181.14843 * 16 15 14 45 45 H 1.09002 * 109.51937 * 182.48259 * 17 16 15 46 46 H 1.08996 * 109.52227 * 62.29775 * 17 16 15 47 47 H 1.08999 * 109.45841 * 58.66041 * 18 4 2 48 48 H 1.09004 * 109.45678 * 178.62752 * 18 4 2 49 49 H 1.09003 * 109.49941 * 181.31361 * 19 18 4 50 50 H 1.08994 * 109.50249 * 301.41336 * 19 18 4 51 51 H 1.09005 * 109.58634 * 65.15103 * 20 19 18 52 52 H 1.09000 * 109.59003 * 185.57488 * 20 19 18 53 53 H 0.97000 * 119.99726 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.7639 -0.1655 2.1372 6 7 1.4541 -2.0676 1.3079 7 6 1.3310 -2.6958 2.4939 8 8 1.7086 -2.1522 3.5101 9 6 0.7252 -4.0743 2.5571 10 6 0.7022 -4.5552 4.0094 11 8 0.1272 -5.8620 4.0694 12 6 0.0588 -6.4068 5.3887 13 6 1.3383 -7.1952 5.6845 14 6 1.2226 -7.8402 7.0681 15 8 0.0668 -8.6797 7.1058 16 6 -1.1639 -7.9884 6.8830 17 6 -1.1441 -7.3495 5.4920 18 6 3.5679 -0.8434 1.1728 19 6 3.9604 -1.6608 -0.0599 20 6 3.4686 -0.9435 -1.3210 21 7 2.0254 -0.6990 -1.1936 22 6 1.1586 -1.1143 -2.1690 23 1 0.1446 -1.3827 -1.9117 24 6 1.5832 -1.1904 -3.4884 25 7 2.6931 -0.5875 -3.8583 26 14 0.5791 -2.1482 -4.7389 27 1 -0.4156 -1.2450 -5.3715 28 1 1.4820 -2.6983 -5.7818 29 1 -0.1271 -3.2628 -4.0576 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1524 -2.5026 0.4950 34 1 -0.2931 -4.0416 2.1694 35 1 1.3211 -4.7609 1.9559 36 1 1.7203 -4.5876 4.3974 37 1 0.1061 -3.8683 4.6102 38 1 -0.0483 -5.5984 6.1119 39 1 1.4702 -7.9715 4.9307 40 1 2.1941 -6.5205 5.6675 41 1 1.1313 -7.0616 7.8255 42 1 2.1125 -8.4376 7.2661 43 1 -1.2865 -7.2118 7.6380 44 1 -1.9935 -8.6925 6.9479 45 1 -2.0637 -6.7850 5.3374 46 1 -1.0623 -8.1288 4.7344 47 1 4.0046 0.1528 1.1022 48 1 3.9381 -1.3393 2.0701 49 1 5.0450 -1.7624 -0.0989 50 1 3.5038 -2.6488 -0.0019 51 1 3.9920 0.0065 -1.4287 52 1 3.6576 -1.5682 -2.1940 53 1 2.9900 -0.6410 -4.7802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676894906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:46 Heat of formation + Delta-G solvation = -140.732857 kcal Electronic energy + Delta-G solvation = -30888.336451 eV Core-core repulsion = 26759.271557 eV Total energy + Delta-G solvation = -4129.064893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.20426 -40.56746 -39.28328 -38.37614 -35.59435 -34.14712 -33.90230 -33.38140 -32.12557 -32.07757 -30.80289 -27.90029 -26.84023 -25.74816 -24.80231 -24.41307 -23.49061 -22.37460 -21.61912 -21.18884 -20.27614 -18.60018 -18.25330 -17.54476 -17.25661 -17.04336 -16.98776 -16.78835 -16.47343 -16.01970 -15.80176 -15.69694 -15.30396 -15.16623 -14.85357 -14.84054 -14.47727 -14.30295 -14.21400 -14.12333 -13.54274 -13.36540 -13.02710 -12.91772 -12.84156 -12.71339 -12.66045 -12.40907 -12.33416 -12.33168 -12.16734 -12.08329 -11.92376 -11.79420 -11.66343 -11.37413 -11.35623 -11.02032 -10.86230 -10.67515 -10.50136 -10.48608 -9.89117 -8.59398 -7.80800 -5.27360 1.50090 1.53258 1.60318 1.69508 2.06838 2.54911 2.80012 2.96708 3.35950 3.60237 3.72975 3.73886 3.81186 3.96630 3.99355 4.03933 4.06298 4.10450 4.19802 4.22865 4.25629 4.36803 4.40499 4.49730 4.57525 4.59916 4.67630 4.68793 4.74954 4.79464 4.80247 4.82252 4.86139 4.96190 5.00679 5.03747 5.05374 5.11424 5.14276 5.19570 5.24134 5.35820 5.47783 5.56511 5.66463 5.76081 5.80941 6.18495 6.21354 6.45624 6.69195 7.20633 7.31395 7.90843 8.44359 9.25864 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002285 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.252383 B =12251.890000 C =13037.081675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.028 0.972 4 C 0.144 3.856 5 H 0.080 0.920 6 N -0.697 5.697 7 C 0.517 3.483 8 O -0.586 6.586 9 C -0.134 4.134 10 C 0.087 3.913 11 O -0.393 6.393 12 C 0.082 3.918 13 C -0.177 4.177 14 C 0.063 3.937 15 O -0.403 6.403 16 C 0.062 3.938 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.126 4.126 20 C 0.179 3.821 21 N -0.596 5.596 22 C -0.245 4.245 23 H 0.081 0.919 24 C -0.051 4.051 25 N -0.936 5.936 26 Si 0.958 3.042 27 H -0.291 1.291 28 H -0.302 1.302 29 H -0.264 1.264 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.410 0.590 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.054 0.946 51 H -0.007 1.007 52 H 0.054 0.946 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 -11.648 20.186 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.046 0.954 4 C 0.037 3.963 5 H 0.098 0.902 6 N -0.347 5.347 7 C 0.305 3.695 8 O -0.468 6.468 9 C -0.173 4.173 10 C 0.010 3.990 11 O -0.313 6.313 12 C 0.025 3.975 13 C -0.215 4.215 14 C -0.014 4.014 15 O -0.322 6.322 16 C -0.014 4.014 17 C -0.188 4.188 18 C -0.154 4.154 19 C -0.165 4.165 20 C 0.053 3.947 21 N -0.320 5.320 22 C -0.376 4.376 23 H 0.098 0.902 24 C -0.246 4.246 25 N -0.583 5.583 26 Si 0.788 3.212 27 H -0.219 1.219 28 H -0.229 1.229 29 H -0.189 1.189 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.083 0.917 44 H 0.132 0.868 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.011 0.989 52 H 0.072 0.928 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.375 -11.540 20.596 24.213 hybrid contribution 0.042 0.275 -1.650 1.673 sum -5.333 -11.265 18.947 22.679 Atomic orbital electron populations 1.21696 0.94129 1.01851 1.00794 1.20854 0.94604 0.93355 0.86301 0.95402 1.21294 0.92786 0.83694 0.98491 0.90226 1.45956 1.61415 1.18009 1.09348 1.20698 0.78028 0.87821 0.82962 1.90649 1.52150 1.68695 1.35273 1.21428 1.04454 0.92944 0.98499 1.22037 0.97842 0.83424 0.95722 1.87853 1.82712 1.31767 1.28926 1.22264 0.95491 0.95482 0.84272 1.22709 0.98741 1.00777 0.99275 1.22656 0.89035 0.94791 0.94886 1.87918 1.15341 1.36532 1.92373 1.22728 0.86935 0.97488 0.94285 1.22294 0.98074 0.99162 0.99280 1.21715 0.95670 1.00409 0.97558 1.21944 0.99656 0.99122 0.95741 1.20570 0.83381 0.95707 0.95010 1.44332 1.02860 1.65414 1.19348 1.19470 0.95666 1.36085 0.86337 0.90159 1.25794 0.98960 1.00927 0.98918 1.70180 1.25914 1.45662 1.16522 0.85414 0.77753 0.78977 0.79096 1.21855 1.22887 1.18894 0.91766 0.93545 0.92257 0.75372 0.86701 0.87253 0.93194 0.92766 0.91261 0.91229 0.90415 0.91843 0.87430 0.91707 0.86795 0.89270 0.91150 0.91710 0.92552 0.92132 0.92679 0.98883 0.92780 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.74 71.98 0.56 -3.69 16 2 C 0.16 5.82 3.19 44.98 0.14 5.97 16 3 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.14 4.73 2.32 45.07 0.10 4.83 16 5 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 6 N -0.70 -20.83 3.46 -442.15 -1.53 -22.36 16 7 C 0.52 14.74 7.80 87.66 0.68 15.43 16 8 O -0.59 -20.07 15.65 -3.02 -0.05 -20.11 16 9 C -0.13 -2.96 6.07 29.85 0.18 -2.78 16 10 C 0.09 1.91 5.04 71.98 0.36 2.27 16 11 O -0.39 -8.51 10.00 -148.98 -1.49 -10.00 16 12 C 0.08 1.42 2.70 30.71 0.08 1.51 16 13 C -0.18 -2.86 5.76 30.69 0.18 -2.68 16 14 C 0.06 0.85 6.84 72.02 0.49 1.35 16 15 O -0.40 -6.77 10.77 -148.98 -1.60 -8.37 16 16 C 0.06 0.76 6.84 72.01 0.49 1.25 16 17 C -0.15 -2.20 5.79 30.68 0.18 -2.02 16 18 C -0.11 -3.81 5.58 30.62 0.17 -3.64 16 19 C -0.13 -4.53 5.93 30.67 0.18 -4.35 16 20 C 0.18 8.13 5.28 86.36 0.46 8.58 16 21 N -0.60 -26.66 2.64 -675.21 -1.78 -28.44 16 22 C -0.25 -11.97 8.58 84.03 0.72 -11.25 16 23 H 0.08 3.70 6.24 -2.91 -0.02 3.68 16 24 C -0.05 -2.65 4.94 84.86 0.42 -2.23 16 25 N -0.94 -53.18 11.23 21.65 0.24 -52.93 16 26 Si 0.96 42.53 29.58 68.60 2.03 44.56 16 27 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 28 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 29 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 30 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.05 1.70 7.66 -2.39 -0.02 1.68 16 32 H 0.06 1.90 6.40 -2.39 -0.02 1.89 16 33 H 0.41 12.52 7.78 -92.70 -0.72 11.80 16 34 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 1.15 7.95 -2.39 -0.02 1.13 16 37 H 0.05 1.21 8.05 -2.39 -0.02 1.19 16 38 H 0.07 1.09 7.79 -2.39 -0.02 1.07 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.22 7.99 -2.39 -0.02 1.20 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.11 1.03 8.14 -2.38 -0.02 1.02 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 49 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.05 1.97 7.53 -2.39 -0.02 1.96 16 51 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 52 H 0.05 2.80 6.14 -2.39 -0.01 2.79 16 53 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -62.25 406.60 1.38 -60.86 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.16 Total: 28.25 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.40 Total: 8.55 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.07 Total: -103.74 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -3.14 Total: -38.49 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -62.25 1.38 -60.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676894906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.869 kcal (2) G-P(sol) polarization free energy of solvation -62.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds