Wall clock time and date at job start Sat Apr 11 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 114.00123 * 2 1 4 4 C 1.53005 * 109.46943 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47091 * 65.00131 * 4 3 2 6 6 C 1.36936 * 120.00475 * 264.47660 * 5 4 3 7 7 H 1.07999 * 120.00758 * 139.03221 * 6 5 4 8 8 C 1.38814 * 119.99323 * 319.03392 * 6 5 4 9 9 N 1.31621 * 120.00219 * 341.50030 * 8 6 5 10 10 Si 1.86801 * 119.99918 * 161.49927 * 8 6 5 11 11 H 1.48500 * 109.47114 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47017 * 119.99649 * 10 8 6 13 13 H 1.48493 * 109.47482 * 239.99707 * 10 8 6 14 14 C 1.46501 * 119.99849 * 84.47273 * 5 4 3 15 15 C 1.53038 * 109.46256 * 239.99663 * 14 5 4 16 16 C 1.53191 * 109.31686 * 178.61385 * 15 14 5 17 17 N 1.46928 * 108.77133 * 54.63567 * 16 15 14 18 18 C 1.34780 * 120.62994 * 126.39326 * 17 16 15 19 19 O 1.21283 * 119.99959 * 354.67097 * 18 17 16 20 20 C 1.50703 * 120.00329 * 174.67507 * 18 17 16 21 21 H 1.09000 * 110.27034 * 313.43218 * 20 18 17 22 22 C 1.54951 * 110.30872 * 75.52054 * 20 18 17 23 23 C 1.55415 * 100.88787 * 155.28860 * 22 20 18 24 24 H 1.09003 * 110.75581 * 84.17714 * 23 22 20 25 25 C 1.53002 * 110.87951 * 207.75240 * 23 22 20 26 26 C 1.54379 * 102.31266 * 325.99019 * 23 22 20 27 27 O 1.43234 * 107.58940 * 21.28664 * 26 23 22 28 28 C 1.46923 * 118.74542 * 306.39708 * 17 16 15 29 29 C 1.53049 * 109.45779 * 119.93144 * 14 5 4 30 30 H 1.08995 * 109.46948 * 299.99803 * 1 2 3 31 31 H 1.09000 * 109.47229 * 59.99798 * 1 2 3 32 32 H 1.09000 * 109.47012 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46987 * 60.00022 * 3 2 1 34 34 H 1.08996 * 109.46736 * 300.00046 * 3 2 1 35 35 H 1.08997 * 109.46971 * 305.00195 * 4 3 2 36 36 H 1.09003 * 109.46614 * 184.99985 * 4 3 2 37 37 H 0.96998 * 119.99791 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46327 * 359.97263 * 14 5 4 39 39 H 1.09006 * 109.49743 * 58.66350 * 15 14 5 40 40 H 1.08996 * 109.52846 * 298.58450 * 15 14 5 41 41 H 1.09001 * 109.58764 * 174.42275 * 16 15 14 42 42 H 1.09001 * 109.58848 * 294.85637 * 16 15 14 43 43 H 1.08995 * 111.12320 * 273.28074 * 22 20 18 44 44 H 1.08998 * 111.12439 * 37.44526 * 22 20 18 45 45 H 1.08998 * 109.47084 * 174.37671 * 25 23 22 46 46 H 1.09000 * 109.47150 * 294.37456 * 25 23 22 47 47 H 1.08992 * 109.47332 * 54.37885 * 25 23 22 48 48 H 1.09000 * 109.83142 * 261.77325 * 26 23 22 49 49 H 1.09003 * 109.90423 * 140.83854 * 26 23 22 50 50 H 1.09012 * 109.58154 * 293.82102 * 28 17 16 51 51 H 1.08998 * 109.59104 * 173.39597 * 28 17 16 52 52 H 1.08994 * 109.49644 * 301.34173 * 29 14 5 53 53 H 1.09004 * 109.49645 * 61.43557 * 29 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2067 -0.7850 -1.3023 7 1 3.8900 -1.3544 -2.1636 8 6 4.8471 -1.4205 -0.2474 9 7 5.5487 -0.7174 0.6163 10 14 4.7131 -3.2736 -0.0534 11 1 3.8743 -3.8264 -1.1470 12 1 6.0685 -3.8771 -0.1164 13 1 4.0906 -3.5904 1.2570 14 6 4.1718 1.3864 -2.4474 15 6 3.2438 0.8951 -3.5607 16 6 3.4254 1.7789 -4.7987 17 7 4.8487 1.7956 -5.1630 18 6 5.2416 1.4772 -6.4123 19 8 4.4293 1.0801 -7.2207 20 6 6.6901 1.6144 -6.8048 21 1 7.0815 2.5764 -6.4739 22 6 7.5235 0.4573 -6.1984 23 6 8.7183 0.4047 -7.1909 24 1 9.4801 1.1349 -6.9175 25 6 9.3111 -1.0043 -7.2564 26 6 8.0505 0.7826 -8.5304 27 8 6.8362 1.4792 -8.2274 28 6 5.8357 2.1661 -4.1396 29 6 5.6270 1.2780 -2.9089 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1765 0.0902 37 1 5.9965 -1.1616 1.3532 38 1 3.9413 2.4261 -2.2150 39 1 2.2089 0.9506 -3.2228 40 1 3.4898 -0.1368 -3.8112 41 1 2.8414 1.3743 -5.6254 42 1 3.0934 2.7928 -4.5758 43 1 7.8586 0.7010 -5.1903 44 1 6.9634 -0.4777 -6.2090 45 1 10.0791 -1.0398 -8.0291 46 1 9.7533 -1.2576 -6.2928 47 1 8.5235 -1.7192 -7.4938 48 1 7.8269 -0.1197 -9.0997 49 1 8.7134 1.4284 -9.1064 50 1 5.7001 3.2117 -3.8629 51 1 6.8418 2.0171 -4.5314 52 1 6.2883 1.6060 -2.1071 53 1 5.8511 0.2425 -3.1654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699690377.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:01 Heat of formation + Delta-G solvation = -121.201798 kcal Electronic energy + Delta-G solvation = -32125.704559 eV Core-core repulsion = 27997.486596 eV Total energy + Delta-G solvation = -4128.217963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69080 -40.04822 -39.01288 -38.23377 -36.54562 -34.58679 -33.85866 -32.70780 -32.09812 -30.84462 -29.69730 -27.33340 -27.14442 -26.56391 -25.25235 -24.23122 -23.74229 -22.34084 -21.82990 -21.26409 -19.96493 -18.84900 -18.11595 -17.51944 -17.29474 -16.88950 -16.71759 -16.56526 -16.46246 -16.06872 -15.70310 -15.47338 -15.34660 -15.18317 -14.97598 -14.79662 -14.26636 -14.24691 -13.93319 -13.76078 -13.43401 -13.35869 -13.32129 -13.12343 -13.00277 -12.77127 -12.65190 -12.56651 -12.34416 -12.23947 -12.16301 -12.05097 -11.96421 -11.80416 -11.69324 -11.48714 -11.45255 -11.10847 -10.94112 -10.41034 -10.38946 -10.31334 -9.64199 -8.37167 -7.71985 -5.31962 1.42151 1.47552 1.47975 1.55058 1.80886 2.56560 2.90959 3.21764 3.26159 3.39282 3.51313 3.63866 3.75996 3.92152 4.00539 4.04445 4.16695 4.23266 4.26483 4.37516 4.43338 4.47392 4.51477 4.53632 4.61640 4.64511 4.66773 4.71593 4.74049 4.76927 4.83226 4.84468 4.86417 4.90180 4.91704 4.94168 5.02298 5.05107 5.16939 5.18086 5.22700 5.36598 5.46717 5.64310 5.70377 5.77748 5.85740 5.89603 6.39272 6.54274 6.69816 7.10981 7.32360 7.99949 8.51203 9.24834 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.003523 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.015823 B = 7945.632808 C = 9234.977449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.150 3.850 5 N -0.583 5.583 6 C -0.219 4.219 7 H 0.032 0.968 8 C -0.021 4.021 9 N -0.914 5.914 10 Si 0.933 3.067 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.295 1.295 14 C 0.174 3.826 15 C -0.123 4.123 16 C 0.121 3.879 17 N -0.600 5.600 18 C 0.507 3.493 19 O -0.582 6.582 20 C 0.069 3.931 21 H 0.127 0.873 22 C -0.143 4.143 23 C -0.114 4.114 24 H 0.116 0.884 25 C -0.143 4.143 26 C 0.046 3.954 27 O -0.388 6.388 28 C 0.109 3.891 29 C -0.122 4.122 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.246 0.754 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.045 0.955 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.103 0.897 52 H 0.065 0.935 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 9.423 -9.735 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.027 4.027 4 C 0.023 3.977 5 N -0.303 5.303 6 C -0.351 4.351 7 H 0.050 0.950 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.764 3.236 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.222 1.222 14 C 0.067 3.933 15 C -0.164 4.164 16 C -0.002 4.002 17 N -0.333 5.333 18 C 0.296 3.704 19 O -0.462 6.462 20 C 0.009 3.991 21 H 0.144 0.856 22 C -0.181 4.181 23 C -0.132 4.132 24 H 0.134 0.866 25 C -0.200 4.200 26 C -0.030 4.030 27 O -0.307 6.307 28 C -0.013 4.013 29 C -0.162 4.162 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.121 0.879 52 H 0.084 0.916 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.374 9.072 -10.166 14.310 hybrid contribution -0.565 -1.499 0.628 1.720 sum 3.809 7.573 -9.538 12.761 Atomic orbital electron populations 1.22799 0.81620 1.02512 1.00031 1.88117 1.19561 1.29057 1.95207 1.23333 0.97060 0.83818 0.98505 1.20868 0.89131 0.96392 0.91265 1.43815 1.76264 1.03722 1.06483 1.18636 1.28758 0.84444 1.03232 0.95003 1.25501 0.96784 0.99413 1.00087 1.70052 1.33540 1.35105 1.17170 0.85763 0.76659 0.84175 0.77046 1.20750 1.21919 1.22199 1.20501 0.92547 0.93797 0.86437 1.22148 1.00335 0.98475 0.95398 1.21589 0.81090 1.00797 0.96718 1.48160 1.08437 1.66847 1.09893 1.21080 0.91184 0.76419 0.81745 1.90648 1.56016 1.47445 1.52046 1.22944 0.91178 1.01986 0.82997 0.85619 1.23448 0.96114 0.97057 1.01447 1.22757 0.97149 1.00303 0.93034 0.86629 1.21735 1.00986 0.94030 1.03233 1.23515 0.84985 0.96928 0.97580 1.88464 1.43453 1.78003 1.20825 1.22127 0.92203 0.99844 0.87168 1.22098 0.98723 0.99033 0.96361 0.93466 0.93954 0.90170 0.93566 0.94050 0.92259 0.92743 0.94425 0.91185 0.91963 0.95055 0.91299 0.88996 0.86972 0.92212 0.90352 0.91495 0.93608 0.91663 0.88732 0.88527 0.87901 0.91617 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.69 10.44 -148.98 -1.56 -18.25 16 3 C 0.05 1.90 6.28 71.98 0.45 2.35 16 4 C 0.15 6.46 5.55 86.38 0.48 6.94 16 5 N -0.58 -26.30 2.29 -677.87 -1.56 -27.85 16 6 C -0.22 -11.53 7.97 84.03 0.67 -10.86 16 7 H 0.03 1.81 6.92 -2.91 -0.02 1.79 16 8 C -0.02 -1.14 4.94 84.86 0.42 -0.72 16 9 N -0.91 -51.08 11.63 21.65 0.25 -50.82 16 10 Si 0.93 45.73 29.59 68.60 2.03 47.76 16 11 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 13 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 14 C 0.17 6.27 2.59 45.02 0.12 6.39 16 15 C -0.12 -4.37 5.29 30.67 0.16 -4.21 16 16 C 0.12 3.62 6.44 86.36 0.56 4.18 16 17 N -0.60 -17.25 2.97 -818.88 -2.43 -19.68 16 18 C 0.51 16.35 7.03 87.66 0.62 16.97 16 19 O -0.58 -24.19 16.00 15.19 0.24 -23.95 16 20 C 0.07 1.70 2.88 30.52 0.09 1.78 16 21 H 0.13 2.24 7.50 -2.39 -0.02 2.22 16 22 C -0.14 -3.05 5.48 32.09 0.18 -2.87 16 23 C -0.11 -1.81 3.59 -9.49 -0.03 -1.84 16 24 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.14 -2.12 9.14 71.98 0.66 -1.47 16 26 C 0.05 0.88 7.41 72.45 0.54 1.42 16 27 O -0.39 -10.89 10.63 -130.75 -1.39 -12.28 16 28 C 0.11 2.56 6.09 86.36 0.53 3.08 16 29 C -0.12 -4.06 5.31 30.67 0.16 -3.90 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 3.07 5.76 -2.39 -0.01 3.05 16 36 H 0.05 2.12 8.04 -2.39 -0.02 2.10 16 37 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 38 H 0.07 2.22 7.87 -2.39 -0.02 2.20 16 39 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.03 1.32 7.09 -2.39 -0.02 1.31 16 41 H 0.07 2.31 7.00 -2.39 -0.02 2.29 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.11 2.03 6.56 -2.39 -0.02 2.02 16 44 H 0.06 1.61 7.93 -2.39 -0.02 1.59 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.04 0.81 8.12 -2.39 -0.02 0.79 16 48 H 0.07 1.31 7.81 -2.39 -0.02 1.29 16 49 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 51 H 0.10 1.91 4.20 -2.39 -0.01 1.90 16 52 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 53 H 0.04 1.55 7.71 -2.38 -0.02 1.53 16 Total: -1.00 -72.32 408.57 3.30 -69.02 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.87 Total: 16.75 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.83 Total: 19.30 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -3.74 Total: -98.36 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -2.70 Total: -54.48 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.32 3.30 -69.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699690377.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.178 kcal (2) G-P(sol) polarization free energy of solvation -72.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds