Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.82369 * 2 1 4 4 C 1.54381 * 109.83083 * 239.11201 * 2 1 3 5 5 C 1.55303 * 102.25289 * 219.13226 * 4 2 1 6 6 C 1.54941 * 100.94263 * 34.13291 * 5 4 2 7 7 H 1.09002 * 110.30812 * 82.47124 * 6 5 4 8 8 C 1.53004 * 110.31108 * 204.54142 * 6 5 4 9 9 C 1.52991 * 109.47353 * 183.60934 * 8 6 5 10 10 C 1.50698 * 109.47374 * 180.02562 * 9 8 6 11 11 O 1.21287 * 119.99758 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00049 * 180.02562 * 10 9 8 13 13 C 1.46929 * 120.63196 * 359.71178 * 12 10 9 14 14 C 1.52761 * 109.00877 * 233.58971 * 13 12 10 15 15 C 1.53045 * 109.38077 * 305.58863 * 14 13 12 16 16 O 1.42896 * 109.46242 * 301.21641 * 15 14 13 17 17 C 1.53001 * 109.45796 * 181.26115 * 15 14 13 18 18 N 1.46502 * 109.47228 * 59.93112 * 17 15 14 19 19 C 1.36935 * 120.00159 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00281 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00211 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99735 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00174 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46975 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46987 * 120.00102 * 23 21 19 26 26 H 1.48503 * 109.46817 * 239.99686 * 23 21 19 27 27 C 1.53039 * 109.54011 * 61.24228 * 15 14 13 28 28 C 1.46926 * 120.62961 * 179.97438 * 12 10 9 29 29 O 1.43234 * 109.82972 * 120.98073 * 2 1 3 30 30 H 1.09001 * 109.47339 * 180.88669 * 1 2 3 31 31 H 1.09005 * 109.47112 * 300.89093 * 1 2 3 32 32 H 1.09008 * 109.47043 * 60.88596 * 1 2 3 33 33 H 1.09005 * 110.84474 * 100.94162 * 4 2 1 34 34 H 1.09002 * 111.02172 * 337.40135 * 4 2 1 35 35 H 1.09004 * 111.12114 * 276.21132 * 5 4 2 36 36 H 1.09003 * 111.12327 * 152.05551 * 5 4 2 37 37 H 1.09001 * 109.47200 * 303.61447 * 8 6 5 38 38 H 1.09002 * 109.46807 * 63.60937 * 8 6 5 39 39 H 1.09001 * 109.47387 * 300.00399 * 9 8 6 40 40 H 1.09002 * 109.47161 * 60.00221 * 9 8 6 41 41 H 1.08996 * 109.58372 * 353.42881 * 13 12 10 42 42 H 1.09003 * 109.58260 * 113.85334 * 13 12 10 43 43 H 1.08996 * 109.56687 * 185.55539 * 14 13 12 44 44 H 1.08994 * 109.36233 * 65.49592 * 14 13 12 45 45 H 0.96700 * 114.00479 * 300.07345 * 16 15 14 46 46 H 1.09000 * 109.47408 * 179.97438 * 17 15 14 47 47 H 1.09001 * 109.47160 * 299.93238 * 17 15 14 48 48 H 0.97003 * 119.99883 * 0.02562 * 18 17 15 49 49 H 0.96996 * 120.00046 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.49617 * 178.67879 * 27 15 14 51 51 H 1.09002 * 109.49392 * 58.58376 * 27 15 14 52 52 H 1.09000 * 109.58792 * 246.15119 * 28 12 10 53 53 H 1.09007 * 109.59044 * 6.43572 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2730 -1.5216 -0.6779 6 6 2.7746 -1.8451 0.7531 7 1 2.1400 -2.7312 0.7414 8 6 3.9625 -2.0560 1.6941 9 6 3.4512 -2.4619 3.0777 10 6 4.6212 -2.6691 4.0047 11 8 5.7526 -2.5084 3.5985 12 7 4.4103 -3.0339 5.2849 13 6 3.0453 -3.2273 5.7930 14 6 2.8563 -2.3767 7.0478 15 6 3.9566 -2.7102 8.0579 16 8 3.8995 -4.1007 8.3823 17 6 3.7507 -1.8821 9.3278 18 7 2.4421 -2.1945 9.9078 19 6 2.0356 -1.5699 11.0566 20 1 2.6798 -0.8472 11.5354 21 6 0.7959 -1.8663 11.6065 22 7 0.0111 -2.7475 11.0234 23 14 0.2417 -1.0148 13.1740 24 1 1.2989 -0.0759 13.6276 25 1 -1.0108 -0.2615 12.9117 26 1 -0.0035 -2.0307 14.2290 27 6 5.3235 -2.3836 7.4523 28 6 5.5407 -3.2402 6.2005 29 8 2.0159 -0.6936 1.1552 30 1 -0.3634 -1.0275 0.0159 31 1 -0.3633 0.5276 0.8819 32 1 -0.3633 0.5000 -0.8979 33 1 2.3672 -0.0408 -2.0166 34 1 1.3027 -1.4335 -1.6347 35 1 4.1620 -0.8915 -0.6514 36 1 3.4571 -2.4339 -1.2454 37 1 4.6041 -2.8434 1.2984 38 1 4.5315 -1.1298 1.7742 39 1 2.8096 -1.6745 3.4734 40 1 2.8823 -3.3882 2.9976 41 1 2.3259 -2.9208 5.0337 42 1 2.8931 -4.2778 6.0408 43 1 1.8819 -2.5876 7.4884 44 1 2.9149 -1.3215 6.7812 45 1 3.0594 -4.3797 8.7715 46 1 4.5339 -2.1197 10.0476 47 1 3.7947 -0.8213 9.0810 48 1 1.8637 -2.8439 9.4781 49 1 -0.8553 -2.9543 11.4073 50 1 6.1051 -2.5993 8.1808 51 1 5.3588 -1.3282 7.1819 52 1 5.5957 -4.2918 6.4820 53 1 6.4677 -2.9445 5.7090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700308516.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -157.783614 kcal Electronic energy + Delta-G solvation = -30667.472688 eV Core-core repulsion = 26537.668419 eV Total energy + Delta-G solvation = -4129.804270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49327 -40.56797 -39.70420 -36.82040 -35.76267 -34.97856 -33.49405 -33.17026 -32.68322 -31.82945 -31.32643 -28.50604 -27.35233 -25.57984 -24.48572 -24.17206 -22.99549 -22.41919 -21.57945 -21.16976 -19.89419 -19.46488 -18.27628 -17.93441 -17.32977 -16.97508 -16.76891 -16.66209 -16.38100 -15.85175 -15.69152 -15.33336 -15.03112 -14.98159 -14.79686 -14.58499 -14.39009 -14.29706 -14.15807 -13.95923 -13.59229 -13.26884 -13.20108 -13.08371 -12.99197 -12.81398 -12.74535 -12.61589 -12.54006 -12.27077 -12.22015 -12.06398 -12.03213 -11.98459 -11.74709 -11.67556 -11.58515 -11.31564 -10.98859 -10.87536 -10.67106 -10.41661 -9.64008 -9.02740 -7.97486 -5.25556 1.47374 1.48313 1.57588 1.61451 2.00969 2.54304 2.85803 3.24603 3.39840 3.44005 3.63942 3.64483 3.75199 3.80145 3.90750 3.92323 4.04759 4.13582 4.15526 4.22944 4.31143 4.35066 4.37895 4.44319 4.50737 4.55420 4.61264 4.70333 4.74533 4.76304 4.79253 4.81675 4.83120 4.89459 4.93133 4.98055 4.99587 5.06613 5.07556 5.13718 5.16327 5.25790 5.31950 5.32504 5.38431 5.49012 5.54122 6.21622 6.24676 6.42014 6.74182 7.15045 7.32874 8.03109 8.29106 9.25359 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.002343 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.853116 B =11949.911008 C =13693.181639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.065 3.935 3 H 0.075 0.925 4 C -0.145 4.145 5 C -0.151 4.151 6 C 0.078 3.922 7 H 0.082 0.918 8 C -0.094 4.094 9 C -0.132 4.132 10 C 0.511 3.489 11 O -0.585 6.585 12 N -0.607 5.607 13 C 0.118 3.882 14 C -0.151 4.151 15 C 0.138 3.862 16 O -0.561 6.561 17 C 0.128 3.872 18 N -0.735 5.735 19 C -0.247 4.247 20 H 0.070 0.930 21 C -0.067 4.067 22 N -0.962 5.962 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.292 1.292 26 H -0.293 1.293 27 C -0.111 4.111 28 C 0.122 3.878 29 O -0.399 6.399 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.382 0.618 46 H 0.020 0.980 47 H 0.025 0.975 48 H 0.377 0.623 49 H 0.253 0.747 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.074 0.926 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 0.362 -26.172 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.092 0.908 4 C -0.183 4.183 5 C -0.189 4.189 6 C 0.021 3.979 7 H 0.100 0.900 8 C -0.132 4.132 9 C -0.171 4.171 10 C 0.302 3.698 11 O -0.466 6.466 12 N -0.340 5.340 13 C -0.004 4.004 14 C -0.190 4.190 15 C 0.097 3.903 16 O -0.369 6.369 17 C 0.001 3.999 18 N -0.380 5.380 19 C -0.378 4.378 20 H 0.088 0.912 21 C -0.260 4.260 22 N -0.612 5.612 23 Si 0.798 3.202 24 H -0.196 1.196 25 H -0.219 1.219 26 H -0.220 1.220 27 C -0.150 4.150 28 C -0.001 4.001 29 O -0.319 6.319 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.231 0.769 46 H 0.038 0.962 47 H 0.043 0.957 48 H 0.211 0.789 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.098 0.902 52 H 0.092 0.908 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.604 0.635 -26.267 26.866 hybrid contribution -1.210 0.317 1.397 1.875 sum 4.394 0.952 -24.870 25.273 Atomic orbital electron populations 1.22131 0.94397 1.02593 1.02605 1.22866 0.94807 0.96329 0.85218 0.90750 1.23180 0.97718 0.99949 0.97443 1.23308 0.98595 1.01978 0.94970 1.23085 0.91826 0.89315 0.93646 0.90033 1.21423 0.96552 1.02222 0.93051 1.21684 0.95898 1.04920 0.94600 1.21261 0.91194 0.74966 0.82420 1.90642 1.26157 1.53521 1.76320 1.48240 1.08072 1.67508 1.10153 1.21683 0.82214 1.00657 0.95891 1.22356 0.99563 1.00949 0.96113 1.21218 0.95608 0.81403 0.92073 1.86373 1.42293 1.23949 1.84238 1.21434 0.87570 0.97027 0.93838 1.42375 1.16605 1.50390 1.28595 1.19569 0.99712 1.17381 1.01179 0.91218 1.25456 0.97411 1.00761 1.02392 1.69761 1.11142 1.37897 1.42443 0.85143 0.77766 0.77661 0.79584 1.19565 1.21927 1.22001 1.21818 0.95548 1.00437 0.97177 1.21420 0.89692 1.00053 0.88890 1.88440 1.70908 1.41031 1.31541 0.92244 0.93045 0.89966 0.88854 0.89398 0.90684 0.88265 0.89821 0.92512 0.88155 0.86739 0.87515 0.90127 0.90639 0.91208 0.76925 0.96224 0.95748 0.78872 0.93847 0.89516 0.90232 0.90794 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.44 71.98 0.68 -1.38 16 2 C 0.07 0.96 4.16 31.06 0.13 1.09 16 3 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.15 -1.45 6.54 31.85 0.21 -1.24 16 5 C -0.15 -1.74 6.57 32.05 0.21 -1.53 16 6 C 0.08 1.21 3.41 31.26 0.11 1.32 16 7 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 8 C -0.09 -1.76 4.24 30.59 0.13 -1.63 16 9 C -0.13 -2.54 3.97 29.84 0.12 -2.42 16 10 C 0.51 13.30 7.70 87.66 0.67 13.97 16 11 O -0.59 -19.06 15.39 -3.05 -0.05 -19.11 16 12 N -0.61 -15.27 2.98 -819.64 -2.44 -17.71 16 13 C 0.12 2.70 6.08 86.22 0.52 3.22 16 14 C -0.15 -4.32 4.91 30.53 0.15 -4.17 16 15 C 0.14 4.30 0.71 -10.77 -0.01 4.29 16 16 O -0.56 -18.04 11.71 -148.98 -1.74 -19.79 16 17 C 0.13 5.02 5.40 86.38 0.47 5.49 16 18 N -0.73 -35.12 5.07 -343.44 -1.74 -36.86 16 19 C -0.25 -13.41 9.99 84.04 0.84 -12.57 16 20 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 21 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 22 N -0.96 -56.04 13.06 21.65 0.28 -55.76 16 23 Si 0.97 45.25 29.55 68.60 2.03 47.27 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 C -0.11 -3.03 5.11 30.69 0.16 -2.87 16 28 C 0.12 3.21 6.20 86.38 0.54 3.74 16 29 O -0.40 -7.92 10.41 -148.98 -1.55 -9.47 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.09 0.71 7.86 -2.39 -0.02 0.69 16 35 H 0.07 0.95 8.06 -2.38 -0.02 0.93 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.10 1.99 7.49 -2.39 -0.02 1.97 16 40 H 0.11 1.68 7.95 -2.39 -0.02 1.66 16 41 H 0.11 1.96 5.93 -2.39 -0.01 1.95 16 42 H 0.08 1.81 7.81 -2.39 -0.02 1.79 16 43 H 0.08 2.44 6.82 -2.39 -0.02 2.43 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.38 12.46 7.85 -74.06 -0.58 11.87 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.38 18.34 5.58 -92.71 -0.52 17.82 16 49 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 50 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.07 1.96 7.81 -2.39 -0.02 1.95 16 53 H 0.08 2.30 7.00 -2.38 -0.02 2.28 16 Total: -1.00 -67.32 409.63 -0.03 -67.34 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -0.20 Total: 42.05 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.39 Total: 2.03 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -3.90 Total: -110.33 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -3.34 Total: -48.36 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.32 -0.03 -67.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700308516.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.441 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds