Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99709 * 2 1 4 4 C 1.53007 * 109.46841 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46939 * 55.32036 * 4 3 2 6 6 O 1.42895 * 109.47103 * 295.31612 * 4 3 2 7 7 C 1.42906 * 113.99798 * 150.00136 * 6 4 3 8 8 C 1.50704 * 109.47119 * 175.31527 * 4 3 2 9 9 O 1.21280 * 119.99587 * 107.71279 * 8 4 3 10 10 N 1.34781 * 120.00193 * 287.71861 * 8 4 3 11 11 C 1.47188 * 125.65782 * 5.13486 * 10 8 4 12 12 C 1.53682 * 107.09895 * 181.54686 * 11 10 8 13 13 C 1.54535 * 103.65665 * 21.54431 * 12 11 10 14 14 C 1.47474 * 125.66352 * 185.17923 * 10 8 4 15 15 H 1.08997 * 110.35384 * 274.79590 * 14 10 8 16 16 C 1.53006 * 110.44185 * 37.03077 * 14 10 8 17 17 C 1.52278 * 110.65862 * 263.45832 * 12 11 10 18 18 C 1.53311 * 109.42203 * 176.90373 * 17 12 11 19 19 N 1.46933 * 108.71186 * 53.52691 * 18 17 12 20 20 C 1.36939 * 120.57861 * 125.73553 * 19 18 17 21 21 H 1.07991 * 120.00371 * 211.33580 * 20 19 18 22 22 C 1.38817 * 119.99596 * 31.33401 * 20 19 18 23 23 N 1.31616 * 120.00370 * 10.42938 * 22 20 19 24 24 Si 1.86800 * 119.99702 * 190.43139 * 22 20 19 25 25 H 1.48500 * 109.47017 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47444 * 120.00168 * 24 22 20 27 27 H 1.48503 * 109.46992 * 240.00420 * 24 22 20 28 28 C 1.46928 * 118.84724 * 305.75203 * 19 18 17 29 29 C 1.52264 * 110.66624 * 139.64703 * 12 11 10 30 30 H 1.09000 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46954 * 299.99573 * 1 2 3 32 32 H 1.08992 * 109.47368 * 59.99953 * 1 2 3 33 33 H 1.08993 * 109.47375 * 60.00661 * 3 2 1 34 34 H 1.09001 * 109.47434 * 300.00108 * 3 2 1 35 35 H 1.08993 * 109.46836 * 179.97438 * 7 6 4 36 36 H 1.08997 * 109.46970 * 299.99774 * 7 6 4 37 37 H 1.09000 * 109.47097 * 59.99757 * 7 6 4 38 38 H 1.08995 * 109.90916 * 62.18104 * 11 10 8 39 39 H 1.09000 * 109.91070 * 300.91140 * 11 10 8 40 40 H 1.09008 * 111.00921 * 83.23183 * 13 12 11 41 41 H 1.08997 * 111.01579 * 207.07251 * 13 12 11 42 42 H 1.08998 * 109.47079 * 175.53799 * 16 14 10 43 43 H 1.09004 * 109.46883 * 295.54074 * 16 14 10 44 44 H 1.09001 * 109.47003 * 55.53489 * 16 14 10 45 45 H 1.09004 * 109.47721 * 296.88802 * 17 12 11 46 46 H 1.08996 * 109.48034 * 56.91603 * 17 12 11 47 47 H 1.09001 * 109.60202 * 173.29518 * 18 17 12 48 48 H 1.09004 * 109.59862 * 293.76000 * 18 17 12 49 49 H 0.97000 * 120.00083 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.60339 * 294.48029 * 28 19 18 51 51 H 1.09002 * 109.59513 * 174.01380 * 28 19 18 52 52 H 1.09003 * 109.48220 * 303.07784 * 29 12 11 53 53 H 1.09001 * 109.48348 * 63.10678 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8511 0.5732 -0.8459 6 8 3.9653 0.5725 1.2169 7 6 5.1686 -0.1880 1.0918 8 6 4.1480 2.5567 -0.1167 9 8 4.6932 3.0604 0.8424 10 7 4.0897 3.2240 -1.2862 11 6 3.3709 2.7812 -2.4919 12 6 3.6192 3.8380 -3.5797 13 6 4.9090 4.5483 -3.1108 14 6 4.7363 4.5186 -1.5706 15 1 4.0988 5.3405 -1.2446 16 6 6.0996 4.5980 -0.8806 17 6 2.4652 4.8299 -3.6383 18 6 2.7769 5.9138 -4.6769 19 7 3.1055 5.2635 -5.9528 20 6 2.4337 5.5976 -7.0984 21 1 2.2789 4.8573 -7.8691 22 6 1.9516 6.8882 -7.2688 23 7 2.3114 7.8407 -6.4347 24 14 0.7920 7.2730 -8.6819 25 1 0.5450 6.0387 -9.4696 26 1 -0.4943 7.7821 -8.1421 27 1 1.4042 8.3043 -9.5577 28 6 4.1671 4.2481 -5.9783 29 6 3.8465 3.1749 -4.9313 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 5.4279 -0.6194 2.0586 36 1 5.0197 -0.9869 0.3654 37 1 5.9763 0.4624 0.7562 38 1 2.3039 2.7081 -2.2820 39 1 3.7546 1.8148 -2.8189 40 1 5.7949 3.9912 -3.4156 41 1 4.9476 5.5729 -3.4807 42 1 6.5971 5.5253 -1.1646 43 1 5.9615 4.5760 0.2004 44 1 6.7114 3.7491 -1.1861 45 1 1.5511 4.3078 -3.9210 46 1 2.3326 5.2915 -2.6599 47 1 1.9061 6.5562 -4.8076 48 1 3.6259 6.5090 -4.3406 49 1 1.9747 8.7425 -6.5541 50 1 5.1242 4.7137 -5.7431 51 1 4.2131 3.7919 -6.9672 52 1 4.6811 2.4775 -4.8583 53 1 2.9468 2.6355 -5.2276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707125521.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = -115.308165 kcal Electronic energy + Delta-G solvation = -32327.245582 eV Core-core repulsion = 28199.283186 eV Total energy + Delta-G solvation = -4127.962396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96469 -40.34388 -38.94371 -38.12076 -37.32909 -34.81215 -33.56544 -32.57857 -31.59368 -31.26053 -28.70607 -27.72504 -27.19552 -27.07627 -25.85384 -24.84165 -23.91158 -22.69583 -22.52314 -20.31013 -19.68894 -18.58946 -18.26048 -17.89031 -17.67799 -16.96098 -16.84369 -16.74674 -16.45794 -16.02601 -15.68152 -15.46657 -15.31572 -15.10564 -14.95113 -14.77131 -14.59700 -14.33095 -14.00115 -13.90285 -13.69460 -13.25744 -13.16280 -13.10908 -12.92362 -12.86690 -12.72648 -12.59147 -12.38286 -12.31134 -12.23590 -12.08957 -12.06382 -11.79488 -11.75861 -11.56801 -11.29835 -11.07345 -10.97919 -10.69611 -10.49849 -10.32121 -9.71514 -8.54975 -7.82454 -5.32393 1.34334 1.46995 1.49570 1.58772 1.71228 2.53148 2.65990 2.71275 3.31044 3.39826 3.50662 3.73603 3.75830 3.77977 3.83768 3.90674 4.09026 4.19213 4.24580 4.28500 4.33514 4.47251 4.49497 4.50436 4.54245 4.57700 4.59076 4.61730 4.69064 4.74056 4.79035 4.80146 4.81842 4.88392 4.93213 4.98511 5.08016 5.12297 5.19695 5.28495 5.32812 5.37174 5.44547 5.48977 5.60388 5.70245 5.87893 5.92973 6.07971 6.43362 6.46745 7.02170 7.21707 7.93137 8.43970 9.22362 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.003038 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.972673 B = 9213.989134 C =10202.137107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.070 3.930 4 C 0.084 3.916 5 H 0.113 0.887 6 O -0.376 6.376 7 C 0.026 3.974 8 C 0.509 3.491 9 O -0.557 6.557 10 N -0.605 5.605 11 C 0.106 3.894 12 C -0.052 4.052 13 C -0.111 4.111 14 C 0.134 3.866 15 H 0.065 0.935 16 C -0.152 4.152 17 C -0.114 4.114 18 C 0.181 3.819 19 N -0.609 5.609 20 C -0.256 4.256 21 H 0.065 0.935 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.295 1.295 28 C 0.142 3.858 29 C -0.106 4.106 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.001 0.999 49 H 0.247 0.753 50 H 0.016 0.984 51 H 0.051 0.949 52 H 0.086 0.914 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -16.758 11.488 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.007 4.007 4 C 0.022 3.978 5 H 0.130 0.870 6 O -0.293 6.293 7 C -0.070 4.070 8 C 0.297 3.703 9 O -0.435 6.435 10 N -0.340 5.340 11 C -0.016 4.016 12 C -0.052 4.052 13 C -0.149 4.149 14 C 0.032 3.968 15 H 0.083 0.917 16 C -0.210 4.210 17 C -0.153 4.153 18 C 0.055 3.945 19 N -0.333 5.333 20 C -0.387 4.387 21 H 0.083 0.917 22 C -0.245 4.245 23 N -0.582 5.582 24 Si 0.792 3.208 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.222 1.222 28 C 0.017 3.983 29 C -0.145 4.145 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.019 0.981 49 H 0.057 0.943 50 H 0.034 0.966 51 H 0.070 0.930 52 H 0.104 0.896 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.199 -16.559 12.240 20.709 hybrid contribution -0.600 1.272 -0.961 1.704 sum 1.599 -15.287 11.279 19.064 Atomic orbital electron populations 1.22983 0.78990 1.04261 1.00960 1.87850 1.21677 1.26554 1.95599 1.22488 0.89830 0.86185 1.02218 1.21997 0.94600 0.90728 0.90478 0.86986 1.87984 1.43246 1.67156 1.30905 1.23025 0.85303 0.94449 1.04229 1.21054 0.80312 0.87659 0.81270 1.90657 1.46058 1.69094 1.37712 1.48782 1.51191 1.22036 1.12025 1.22415 0.97159 0.98598 0.83420 1.20848 0.95206 0.94611 0.94555 1.22848 0.97875 1.01857 0.92305 1.21935 0.94310 0.85069 0.95496 0.91706 1.22002 0.95230 1.02325 1.01416 1.21905 0.97304 0.97540 0.98578 1.20588 0.97772 0.92183 0.83927 1.44262 1.39241 1.45271 1.04504 1.19529 1.28811 0.93189 0.97153 0.91731 1.25843 1.02641 0.95519 1.00491 1.70130 1.47240 1.00850 1.39957 0.85267 0.78354 0.77806 0.79398 1.18997 1.21948 1.22237 1.21070 0.90071 0.89754 0.97447 1.21789 1.02075 0.97459 0.93162 0.87840 0.93561 0.92763 0.92774 0.89603 0.87942 0.91841 0.94564 0.90060 0.88687 0.89595 0.90952 0.90857 0.92039 0.92532 0.92505 0.92524 0.93254 0.98126 0.94326 0.96555 0.93046 0.89579 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.58 16 2 O -0.40 -8.07 10.66 -144.03 -1.54 -9.61 16 3 C 0.07 1.42 5.51 71.98 0.40 1.81 16 4 C 0.08 1.85 2.20 29.85 0.07 1.92 16 5 H 0.11 1.99 7.49 -2.39 -0.02 1.97 16 6 O -0.38 -9.48 9.87 -125.64 -1.24 -10.72 16 7 C 0.03 0.47 10.81 113.37 1.23 1.70 16 8 C 0.51 13.53 6.85 87.66 0.60 14.13 16 9 O -0.56 -18.86 14.43 15.72 0.23 -18.64 16 10 N -0.61 -14.64 3.25 -788.67 -2.56 -17.21 16 11 C 0.11 2.20 5.22 86.48 0.45 2.65 16 12 C -0.05 -1.36 0.55 -51.91 -0.03 -1.39 16 13 C -0.11 -2.95 4.35 31.80 0.14 -2.81 16 14 C 0.13 3.53 3.42 45.49 0.16 3.69 16 15 H 0.06 1.87 7.74 -2.39 -0.02 1.85 16 16 C -0.15 -3.86 8.67 71.98 0.62 -3.24 16 17 C -0.11 -3.79 4.74 30.46 0.14 -3.65 16 18 C 0.18 8.10 4.94 86.40 0.43 8.53 16 19 N -0.61 -28.40 2.98 -698.60 -2.08 -30.48 16 20 C -0.26 -13.45 9.58 84.03 0.80 -12.64 16 21 H 0.07 3.31 7.85 -2.92 -0.02 3.29 16 22 C -0.05 -2.69 5.05 84.86 0.43 -2.26 16 23 N -0.94 -53.87 11.02 21.65 0.24 -53.63 16 24 Si 0.96 43.76 29.57 68.60 2.03 45.79 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 28 C 0.14 5.22 6.22 86.40 0.54 5.76 16 29 C -0.11 -2.85 4.72 30.46 0.14 -2.71 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.49 5.50 -2.39 -0.01 1.47 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 37 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 1.55 5.74 -2.39 -0.01 1.54 16 39 H 0.10 1.55 7.57 -2.39 -0.02 1.53 16 40 H 0.09 2.06 7.92 -2.38 -0.02 2.04 16 41 H 0.07 2.31 6.08 -2.39 -0.01 2.30 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.81 6.13 -2.39 -0.01 1.80 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.06 1.79 7.47 -2.39 -0.02 1.77 16 47 H 0.05 2.60 6.05 -2.39 -0.01 2.59 16 48 H 0.00 0.04 6.47 -2.38 -0.02 0.02 16 49 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 50 H 0.02 0.62 7.56 -2.39 -0.02 0.60 16 51 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 52 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 53 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -68.14 400.37 3.32 -64.82 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.88 Total: 16.61 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 7.36 Total: 13.06 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -4.40 Total: -101.31 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -2.55 Total: -38.96 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.14 3.32 -64.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707125521.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.486 kcal (2) G-P(sol) polarization free energy of solvation -68.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds