Wall clock time and date at job start Sat Apr 11 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.57862 * 2 1 4 4 C 1.53194 * 109.58609 * 120.27905 * 2 1 3 5 5 C 1.53040 * 109.30975 * 174.42489 * 4 2 1 6 6 H 1.08996 * 109.45943 * 58.66238 * 5 4 2 7 7 N 1.46505 * 109.44490 * 178.62285 * 5 4 2 8 8 C 1.36936 * 119.99770 * 205.06082 * 7 5 4 9 9 H 1.08002 * 120.00202 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00030 * 180.02562 * 8 7 5 11 11 N 1.31625 * 119.99785 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00288 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47106 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47334 * 119.99584 * 12 10 8 15 15 H 1.48506 * 109.47217 * 240.00049 * 12 10 8 16 16 C 1.53041 * 109.54041 * 298.63714 * 5 4 2 17 17 C 1.53194 * 109.33692 * 61.34948 * 16 5 4 18 18 N 1.46918 * 109.59132 * 239.57377 * 2 1 3 19 19 C 1.34781 * 120.63138 * 6.59837 * 18 2 1 20 20 O 1.21283 * 119.99609 * 5.71851 * 19 18 2 21 21 C 1.50697 * 120.00445 * 185.71217 * 19 18 2 22 22 C 1.52997 * 109.47387 * 180.02562 * 21 19 18 23 23 O 1.42900 * 109.47127 * 180.02562 * 22 21 19 24 24 C 1.42905 * 113.99744 * 180.02562 * 23 22 21 25 25 C 1.53178 * 109.54129 * 269.82203 * 24 23 22 26 26 C 1.53111 * 109.15585 * 183.24277 * 25 24 23 27 27 O 1.42899 * 109.48264 * 57.47564 * 26 25 24 28 28 C 1.42897 * 114.09868 * 298.88517 * 27 26 25 29 29 C 1.53091 * 109.41715 * 61.16477 * 28 27 26 30 30 H 1.08996 * 109.47599 * 294.18216 * 1 2 3 31 31 H 1.08999 * 109.47313 * 54.18650 * 1 2 3 32 32 H 1.08999 * 109.46664 * 174.18267 * 1 2 3 33 33 H 1.08996 * 109.49605 * 54.47575 * 4 2 1 34 34 H 1.09002 * 109.52601 * 294.39797 * 4 2 1 35 35 H 0.96997 * 119.99979 * 25.06578 * 7 5 4 36 36 H 0.97001 * 119.99752 * 180.02562 * 11 10 8 37 37 H 1.08994 * 109.49779 * 181.31701 * 16 5 4 38 38 H 1.09005 * 109.49416 * 301.38489 * 16 5 4 39 39 H 1.09001 * 109.58461 * 65.17254 * 17 16 5 40 40 H 1.09001 * 109.57935 * 185.59308 * 17 16 5 41 41 H 1.08993 * 109.47027 * 300.00430 * 21 19 18 42 42 H 1.09000 * 109.46448 * 60.00406 * 21 19 18 43 43 H 1.09005 * 109.47179 * 300.00580 * 22 21 19 44 44 H 1.09002 * 109.47191 * 59.99895 * 22 21 19 45 45 H 1.09000 * 109.54576 * 29.99966 * 24 23 22 46 46 H 1.09000 * 109.52662 * 303.06090 * 25 24 23 47 47 H 1.09003 * 109.52388 * 63.25106 * 25 24 23 48 48 H 1.08999 * 109.40353 * 297.49496 * 26 25 24 49 49 H 1.08999 * 109.49283 * 177.50937 * 26 25 24 50 50 H 1.08993 * 109.48630 * 301.17919 * 28 27 26 51 51 H 1.09011 * 109.49178 * 181.14777 * 28 27 26 52 52 H 1.08994 * 109.52760 * 182.48110 * 29 28 27 53 53 H 1.09009 * 109.52462 * 62.28906 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 1.2464 5 6 3.5675 -0.8463 1.1713 6 1 4.0061 0.1489 1.0993 7 7 4.0649 -1.5127 2.3775 8 6 5.3489 -1.2943 2.8002 9 1 5.9948 -0.6305 2.2447 10 6 5.8204 -1.9261 3.9428 11 7 5.0331 -2.7347 4.6201 12 14 7.5718 -1.6276 4.5199 13 1 8.2449 -0.6840 3.5915 14 1 7.5505 -1.0474 5.8867 15 1 8.3125 -2.9146 4.5399 16 6 3.9570 -1.6656 -0.0613 17 6 3.4650 -0.9492 -1.3228 18 7 2.0227 -0.7010 -1.1935 19 6 1.1676 -1.1093 -2.1520 20 8 -0.0057 -0.8093 -2.0857 21 6 1.6692 -1.9385 -3.3060 22 6 0.5051 -2.2650 -4.2435 23 8 0.9808 -3.0517 -5.3375 24 6 -0.0329 -3.4126 -6.2779 25 6 -0.6604 -4.7483 -5.8676 26 6 -1.6874 -5.1663 -6.9234 27 8 -1.0508 -5.2522 -8.1999 28 6 -0.4885 -4.0201 -8.6555 29 6 0.5883 -3.5571 -7.6706 30 1 -0.3634 0.4209 0.9374 31 1 -0.3634 0.6013 -0.8333 32 1 -0.3632 -1.0224 -0.1042 33 1 1.6031 -1.7236 1.2936 34 1 1.7659 -0.1646 2.1374 35 1 3.4847 -2.1087 2.8765 36 1 5.3625 -3.1759 5.4187 37 1 5.0413 -1.7695 -0.1013 38 1 3.4989 -2.6529 -0.0015 39 1 3.9903 -0.0004 -1.4325 40 1 3.6519 -1.5756 -2.1951 41 1 2.4291 -1.3793 -3.8518 42 1 2.1017 -2.8645 -2.9270 43 1 -0.2551 -2.8239 -3.6979 44 1 0.0730 -1.3388 -4.6224 45 1 -0.8016 -2.6401 -6.2999 46 1 0.1169 -5.5092 -5.7961 47 1 -1.1533 -4.6379 -4.9017 48 1 -2.4863 -4.4259 -6.9646 49 1 -2.1055 -6.1378 -6.6596 50 1 -1.2716 -3.2646 -8.7194 51 1 -0.0426 -4.1656 -9.6395 52 1 0.9876 -2.5955 -7.9930 53 1 1.3916 -4.2932 -7.6366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716770786.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:34 Heat of formation + Delta-G solvation = -135.852299 kcal Electronic energy + Delta-G solvation = -30320.958419 eV Core-core repulsion = 26192.105163 eV Total energy + Delta-G solvation = -4128.853256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61049 -40.57944 -38.94882 -38.34645 -36.17721 -34.60723 -33.77030 -33.53088 -32.11698 -31.66544 -30.87973 -28.33486 -26.16930 -25.72218 -24.83733 -24.48259 -24.31824 -22.56707 -21.57867 -21.33840 -19.98900 -19.10299 -18.37181 -17.55606 -17.27877 -17.07740 -16.87436 -16.80454 -16.67980 -16.09641 -15.79826 -15.50047 -15.43909 -15.30614 -14.94912 -14.76648 -14.57390 -14.38015 -14.04051 -14.01766 -13.44096 -13.43594 -13.30363 -13.09286 -12.90744 -12.87828 -12.72702 -12.62851 -12.52719 -12.33356 -12.11532 -12.10815 -12.02010 -11.91312 -11.79221 -11.69930 -11.36703 -11.35238 -10.90121 -10.69335 -10.50402 -10.13492 -9.58725 -9.00807 -7.93423 -5.22081 1.48365 1.48487 1.58298 1.58885 1.85682 2.56417 2.60625 2.94413 3.40006 3.58844 3.72159 3.72968 3.73927 3.85293 3.96156 4.01198 4.03790 4.06224 4.09601 4.15525 4.25049 4.26811 4.34872 4.36699 4.48094 4.54554 4.59057 4.62899 4.68218 4.71339 4.74314 4.78287 4.79001 4.82379 4.85061 4.85713 5.02190 5.03589 5.08025 5.10880 5.15936 5.19276 5.27720 5.41416 5.50911 5.55298 5.70430 6.17855 6.21245 6.28378 6.45260 7.16384 7.34329 8.10230 8.32916 9.30383 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.001930 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.451375 B =14501.906134 C =15233.467434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.151 3.849 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.172 3.828 6 H 0.049 0.951 7 N -0.739 5.739 8 C -0.232 4.232 9 H 0.080 0.920 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.971 3.029 13 H -0.263 1.263 14 H -0.297 1.297 15 H -0.296 1.296 16 C -0.142 4.142 17 C 0.114 3.886 18 N -0.604 5.604 19 C 0.518 3.482 20 O -0.567 6.567 21 C -0.135 4.135 22 C 0.084 3.916 23 O -0.392 6.392 24 C 0.084 3.916 25 C -0.178 4.178 26 C 0.063 3.937 27 O -0.403 6.403 28 C 0.061 3.939 29 C -0.150 4.150 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.114 0.886 52 H 0.091 0.909 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.680 1.881 -26.917 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.102 0.898 4 C -0.162 4.162 5 C 0.064 3.936 6 H 0.067 0.933 7 N -0.377 5.377 8 C -0.364 4.364 9 H 0.098 0.902 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.225 1.225 15 H -0.224 1.224 16 C -0.183 4.183 17 C -0.009 4.009 18 N -0.337 5.337 19 C 0.307 3.693 20 O -0.447 6.447 21 C -0.175 4.175 22 C 0.008 3.992 23 O -0.312 6.312 24 C 0.027 3.973 25 C -0.216 4.216 26 C -0.014 4.014 27 O -0.322 6.322 28 C -0.015 4.015 29 C -0.187 4.187 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.124 0.876 50 H 0.083 0.917 51 H 0.132 0.868 52 H 0.109 0.891 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.898 1.915 -26.999 29.567 hybrid contribution 0.622 -0.217 1.596 1.727 sum -11.276 1.698 -25.403 27.845 Atomic orbital electron populations 1.22038 0.92733 1.02264 1.01071 1.21220 0.95379 0.95469 0.83124 0.89772 1.22151 0.95884 1.00444 0.97761 1.20431 0.92205 0.94797 0.86195 0.93317 1.42675 1.12169 1.54585 1.28318 1.19672 0.90082 1.20805 1.05835 0.90198 1.25565 1.02042 1.00603 0.99016 1.69836 1.37114 1.35397 1.19990 0.85103 0.80141 0.77030 0.77682 1.18675 1.22455 1.22388 1.22457 1.01124 0.99265 0.95409 1.21928 0.78670 1.01691 0.98591 1.48259 1.08220 1.57168 1.20036 1.20701 0.85545 0.79495 0.83522 1.90728 1.18238 1.58110 1.77667 1.21521 1.00121 1.01545 0.94308 1.22067 0.95331 0.94540 0.87306 1.87849 1.35566 1.71942 1.35831 1.22242 0.90290 0.95610 0.89185 1.22719 1.00236 0.98327 1.00337 1.22646 0.93605 1.03258 0.81873 1.87921 1.74776 1.33881 1.35629 1.22739 0.94920 0.86117 0.97753 1.22289 0.99764 1.03552 0.93141 0.92891 0.91024 0.93614 0.93222 0.91290 0.79902 0.94230 0.91518 0.93578 0.89510 0.87237 0.86096 0.87485 0.93514 0.92510 0.91214 0.91318 0.90500 0.91838 0.87591 0.91696 0.86806 0.89062 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 7.61 71.98 0.55 -2.79 16 2 C 0.15 4.05 3.49 44.98 0.16 4.20 16 3 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 4 C -0.12 -3.98 4.84 30.67 0.15 -3.84 16 5 C 0.17 6.32 2.73 45.02 0.12 6.44 16 6 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 7 N -0.74 -36.08 5.12 -322.81 -1.65 -37.74 16 8 C -0.23 -12.44 9.93 84.03 0.83 -11.60 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 10 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 11 N -0.97 -59.30 13.06 21.65 0.28 -59.01 16 12 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 13 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 14 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 15 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 16 C -0.14 -4.39 5.66 30.67 0.17 -4.21 16 17 C 0.11 2.47 6.35 86.36 0.55 3.01 16 18 N -0.60 -14.73 2.97 -795.01 -2.36 -17.10 16 19 C 0.52 12.56 7.50 87.66 0.66 13.21 16 20 O -0.57 -16.56 11.55 -3.04 -0.04 -16.60 16 21 C -0.14 -2.48 4.42 29.85 0.13 -2.35 16 22 C 0.08 1.62 5.04 71.98 0.36 1.98 16 23 O -0.39 -7.55 10.00 -148.98 -1.49 -9.04 16 24 C 0.08 1.31 2.69 30.71 0.08 1.39 16 25 C -0.18 -2.70 5.77 30.69 0.18 -2.52 16 26 C 0.06 0.81 6.84 72.02 0.49 1.30 16 27 O -0.40 -6.45 10.77 -148.98 -1.60 -8.05 16 28 C 0.06 0.67 6.84 72.01 0.49 1.17 16 29 C -0.15 -1.93 5.79 30.68 0.18 -1.75 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.99 6.57 -2.39 -0.02 1.97 16 32 H 0.04 1.38 6.92 -2.39 -0.02 1.37 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.37 19.88 7.80 -92.71 -0.72 19.16 16 36 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.78 5.93 -2.39 -0.01 1.77 16 41 H 0.12 1.73 7.71 -2.39 -0.02 1.71 16 42 H 0.11 1.91 7.92 -2.39 -0.02 1.89 16 43 H 0.05 0.98 7.93 -2.38 -0.02 0.96 16 44 H 0.06 1.08 8.04 -2.39 -0.02 1.06 16 45 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 1.15 7.97 -2.39 -0.02 1.13 16 48 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.07 1.07 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -67.86 408.15 0.89 -66.96 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.15 Total: 33.55 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.57 Total: -0.44 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -3.73 Total: -113.85 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -3.13 Total: -33.69 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.86 0.89 -66.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716770786.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.889 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds