Wall clock time and date at job start Sat Apr 11 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.58886 * 2 1 4 4 C 1.53193 * 109.59067 * 239.71235 * 2 1 3 5 5 C 1.53042 * 109.30898 * 294.85099 * 4 2 1 6 6 H 1.08994 * 109.46447 * 58.63832 * 5 4 2 7 7 N 1.46498 * 109.45878 * 178.61403 * 5 4 2 8 8 C 1.36943 * 119.99727 * 204.99923 * 7 5 4 9 9 H 1.07998 * 120.00392 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99586 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00460 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99694 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00129 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00122 * 12 10 8 16 16 C 1.53046 * 109.53802 * 298.63130 * 5 4 2 17 17 C 1.53191 * 109.30965 * 61.36563 * 16 5 4 18 18 N 1.46926 * 109.58699 * 120.41911 * 2 1 3 19 19 C 1.34772 * 120.63595 * 246.15823 * 18 2 1 20 20 O 1.21288 * 119.99648 * 359.97438 * 19 18 2 21 21 C 1.50698 * 120.00140 * 179.97438 * 19 18 2 22 22 C 1.53003 * 109.47056 * 180.02562 * 21 19 18 23 23 O 1.42903 * 109.47139 * 180.02562 * 22 21 19 24 24 C 1.42900 * 114.00007 * 179.97438 * 23 22 21 25 25 C 1.53178 * 109.54313 * 269.82099 * 24 23 22 26 26 C 1.53110 * 109.15449 * 183.24031 * 25 24 23 27 27 O 1.42898 * 109.48800 * 57.47677 * 26 25 24 28 28 C 1.42908 * 114.09739 * 298.88658 * 27 26 25 29 29 C 1.53096 * 109.41373 * 61.15516 * 28 27 26 30 30 H 1.08993 * 109.47343 * 180.28833 * 1 2 3 31 31 H 1.09002 * 109.47176 * 300.29258 * 1 2 3 32 32 H 1.09009 * 109.46917 * 60.28628 * 1 2 3 33 33 H 1.09000 * 109.50171 * 174.89707 * 4 2 1 34 34 H 1.08997 * 109.49421 * 54.79659 * 4 2 1 35 35 H 0.96998 * 120.00095 * 24.99383 * 7 5 4 36 36 H 0.97001 * 119.99952 * 359.97438 * 11 10 8 37 37 H 1.08993 * 109.49844 * 181.32020 * 16 5 4 38 38 H 1.08998 * 109.49516 * 301.41935 * 16 5 4 39 39 H 1.09009 * 109.58444 * 185.57615 * 17 16 5 40 40 H 1.09000 * 109.70675 * 65.23015 * 17 16 5 41 41 H 1.08998 * 109.47212 * 299.99337 * 21 19 18 42 42 H 1.09000 * 109.47229 * 60.00290 * 21 19 18 43 43 H 1.08999 * 109.47119 * 300.00192 * 22 21 19 44 44 H 1.09004 * 109.47140 * 59.99615 * 22 21 19 45 45 H 1.09003 * 109.54292 * 30.00115 * 24 23 22 46 46 H 1.08998 * 109.52199 * 303.05865 * 25 24 23 47 47 H 1.09003 * 109.51854 * 63.24830 * 25 24 23 48 48 H 1.09005 * 109.40625 * 297.49201 * 26 25 24 49 49 H 1.08999 * 109.48894 * 177.50875 * 26 25 24 50 50 H 1.09006 * 109.47931 * 301.17783 * 28 27 26 51 51 H 1.09002 * 109.49138 * 181.14823 * 28 27 26 52 52 H 1.09002 * 109.52064 * 182.48483 * 29 28 27 53 53 H 1.09000 * 109.52175 * 62.30234 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 1.6414 -2.2027 -1.1727 6 1 0.5565 -2.2802 -1.1017 7 7 2.1023 -2.8950 -2.3787 8 6 1.4649 -4.0307 -2.8021 9 1 0.6227 -4.4162 -2.2467 10 6 1.9014 -4.6863 -3.9451 11 7 2.9281 -4.2168 -4.6217 12 14 1.0324 -6.2358 -4.5223 13 1 1.6860 -6.7393 -5.7571 14 1 -0.3921 -5.9276 -4.8073 15 1 1.1119 -7.2723 -3.4617 16 6 2.2800 -2.8465 0.0602 17 6 1.7691 -2.1425 1.3212 18 7 2.0225 -0.7009 1.1937 19 6 2.6943 -0.0343 2.1532 20 8 2.8979 1.1556 2.0357 21 6 3.1926 -0.7673 3.3719 22 6 3.9157 0.2138 4.2970 23 8 4.3887 -0.4814 5.4524 24 6 5.0832 0.3481 6.3861 25 6 6.5767 0.3629 6.0463 26 6 7.3231 1.1876 7.0984 27 8 7.0822 0.6369 8.3948 28 6 5.7074 0.6423 8.7847 29 6 4.8964 -0.2061 7.8017 30 1 -0.3634 -1.0276 0.0052 31 1 -0.3634 0.5184 0.8874 32 1 -0.3633 0.5094 -0.8926 33 1 3.1297 -0.6488 -1.2921 34 1 1.6075 -0.2759 -2.1371 35 1 2.8590 -2.5489 -2.8773 36 1 3.3796 -3.4124 -4.3218 37 1 2.0122 -3.9023 0.0992 38 1 3.3639 -2.7474 0.0021 39 1 2.2943 -2.5300 2.1943 40 1 0.6988 -2.3171 1.4316 41 1 2.3481 -1.2093 3.9006 42 1 3.8821 -1.5541 3.0661 43 1 4.7601 0.6563 3.7686 44 1 3.2259 1.0005 4.6028 45 1 4.6879 1.3627 6.3367 46 1 6.9602 -0.6574 6.0457 47 1 6.7219 0.8082 5.0621 48 1 6.9684 2.2180 7.0694 49 1 8.3922 1.1651 6.8868 50 1 5.3315 1.6655 8.7778 51 1 5.6123 0.2269 9.7880 52 1 3.8410 -0.1674 8.0718 53 1 5.2448 -1.2383 7.8377 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716770787.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:37 Heat of formation + Delta-G solvation = -150.492855 kcal Electronic energy + Delta-G solvation = -30288.809760 eV Core-core repulsion = 26159.321641 eV Total energy + Delta-G solvation = -4129.488119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.56048 -40.60313 -39.21802 -38.40151 -36.53222 -34.45163 -33.85729 -33.42794 -32.13392 -31.72743 -30.76583 -28.60214 -26.08821 -25.64726 -24.85766 -24.56262 -24.41868 -23.04483 -21.64596 -21.23378 -19.68881 -19.17454 -18.73907 -17.82779 -17.34698 -17.03740 -16.90207 -16.78808 -16.40026 -16.11405 -15.98331 -15.81947 -15.49049 -15.20380 -15.09950 -14.99053 -14.55153 -14.38158 -14.28009 -14.07213 -13.85144 -13.37148 -13.33593 -13.01937 -12.98722 -12.78366 -12.66884 -12.56121 -12.36773 -12.35535 -12.14198 -12.12666 -11.99532 -11.87889 -11.80771 -11.50458 -11.38667 -11.06530 -10.97938 -10.82017 -10.69858 -10.53603 -9.74793 -9.11519 -8.36678 -5.31128 1.50137 1.59269 1.69008 1.76803 1.84810 2.55862 2.72613 2.92685 3.41387 3.47363 3.63091 3.69215 3.70705 3.77644 3.93805 3.95465 3.96437 3.99403 4.02657 4.09632 4.16849 4.23425 4.26226 4.33121 4.43875 4.45384 4.49844 4.52114 4.58681 4.66427 4.70082 4.72327 4.73832 4.75788 4.77059 4.82414 4.94712 4.97218 4.98548 5.01888 5.08962 5.17218 5.18834 5.25156 5.45774 5.56038 5.62569 6.13845 6.19567 6.34610 6.50398 7.04059 7.10428 8.00335 8.13514 9.14906 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.001908 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.907970 B =14667.946210 C =15341.489241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.751 5.751 8 C -0.322 4.322 9 H 0.071 0.929 10 C -0.109 4.109 11 N -0.979 5.979 12 Si 1.126 2.874 13 H -0.298 1.298 14 H -0.277 1.277 15 H -0.276 1.276 16 C -0.142 4.142 17 C 0.113 3.887 18 N -0.600 5.600 19 C 0.519 3.481 20 O -0.585 6.585 21 C -0.132 4.132 22 C 0.083 3.917 23 O -0.391 6.391 24 C 0.084 3.916 25 C -0.178 4.178 26 C 0.063 3.937 27 O -0.403 6.403 28 C 0.061 3.939 29 C -0.149 4.149 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.356 0.644 36 H 0.242 0.758 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.115 0.885 52 H 0.091 0.909 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 10.893 27.367 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.163 4.163 5 C 0.071 3.929 6 H 0.071 0.929 7 N -0.392 5.392 8 C -0.454 4.454 9 H 0.089 0.911 10 C -0.300 4.300 11 N -0.627 5.627 12 Si 0.951 3.049 13 H -0.224 1.224 14 H -0.203 1.203 15 H -0.202 1.202 16 C -0.183 4.183 17 C -0.009 4.009 18 N -0.332 5.332 19 C 0.309 3.691 20 O -0.466 6.466 21 C -0.172 4.172 22 C 0.006 3.994 23 O -0.310 6.310 24 C 0.026 3.974 25 C -0.216 4.216 26 C -0.014 4.014 27 O -0.322 6.322 28 C -0.015 4.015 29 C -0.187 4.187 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.187 0.813 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.124 0.876 50 H 0.083 0.917 51 H 0.133 0.867 52 H 0.110 0.890 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.563 9.963 26.411 28.233 hybrid contribution 0.457 1.552 0.025 1.618 sum 1.020 11.515 26.436 28.853 Atomic orbital electron populations 1.22076 0.93257 1.02930 1.02857 1.21046 0.95288 0.96274 0.83104 0.89389 1.22093 1.00299 0.96075 0.97866 1.20384 0.96933 0.89891 0.85736 0.92880 1.42703 1.37466 1.29918 1.29096 1.20359 1.12215 1.03349 1.09453 0.91121 1.27165 0.99875 1.07378 0.95594 1.70997 1.24087 1.24812 1.42837 0.82643 0.74430 0.72186 0.75614 1.22400 1.20345 1.20214 1.22443 1.00013 1.00203 0.95592 1.21916 1.02505 0.77987 0.98532 1.48281 1.54819 1.10041 1.20071 1.20819 0.76799 0.86968 0.84540 1.90667 1.59078 1.16953 1.79881 1.21485 1.03253 0.99505 0.92928 1.22065 0.97421 0.93788 0.86078 1.87845 1.74461 1.36860 1.31856 1.22253 0.91293 0.94460 0.89382 1.22721 0.96143 1.02316 1.00459 1.22644 1.01351 0.95969 0.81415 1.87924 1.26567 1.83594 1.34087 1.22746 0.80549 0.99694 0.98552 1.22287 1.02442 1.01213 0.92768 0.91771 0.91612 0.90813 0.93399 0.91240 0.81307 0.94752 0.91647 0.93754 0.87120 0.89420 0.85738 0.87064 0.93575 0.92588 0.91266 0.91224 0.90561 0.91875 0.87566 0.91725 0.86750 0.89040 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.02 71.98 0.65 -2.88 16 2 C 0.15 3.98 3.20 44.97 0.14 4.13 16 3 H 0.09 2.58 7.01 -2.39 -0.02 2.56 16 4 C -0.12 -4.06 5.02 30.67 0.15 -3.91 16 5 C 0.18 6.62 2.52 45.02 0.11 6.73 16 6 H 0.05 1.98 6.44 -2.39 -0.02 1.96 16 7 N -0.75 -36.77 5.12 -322.81 -1.65 -38.42 16 8 C -0.32 -17.51 9.93 84.03 0.83 -16.68 16 9 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 10 C -0.11 -6.27 5.50 84.86 0.47 -5.80 16 11 N -0.98 -61.27 13.70 21.65 0.30 -60.98 16 12 Si 1.13 51.13 29.92 68.60 2.05 53.18 16 13 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 14 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 16 C -0.14 -4.48 5.66 30.67 0.17 -4.30 16 17 C 0.11 2.50 5.92 86.36 0.51 3.01 16 18 N -0.60 -14.93 2.68 -795.02 -2.13 -17.07 16 19 C 0.52 13.13 7.70 87.66 0.67 13.81 16 20 O -0.58 -18.71 15.40 -3.05 -0.05 -18.76 16 21 C -0.13 -2.45 4.42 29.85 0.13 -2.32 16 22 C 0.08 1.63 5.04 71.98 0.36 2.00 16 23 O -0.39 -7.51 10.00 -148.98 -1.49 -9.00 16 24 C 0.08 1.30 2.69 30.71 0.08 1.38 16 25 C -0.18 -2.71 5.77 30.69 0.18 -2.53 16 26 C 0.06 0.81 6.84 72.02 0.49 1.30 16 27 O -0.40 -6.42 10.77 -148.98 -1.60 -8.03 16 28 C 0.06 0.67 6.84 72.01 0.49 1.16 16 29 C -0.15 -1.91 5.79 30.68 0.18 -1.73 16 30 H 0.06 1.50 5.72 -2.39 -0.01 1.48 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.36 18.69 6.63 -92.71 -0.61 18.07 16 36 H 0.24 15.18 6.77 -92.71 -0.63 14.55 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.83 5.93 -2.38 -0.01 1.82 16 40 H 0.09 1.70 7.49 -2.39 -0.02 1.68 16 41 H 0.12 1.76 7.94 -2.39 -0.02 1.74 16 42 H 0.11 1.93 7.69 -2.39 -0.02 1.91 16 43 H 0.05 0.99 7.93 -2.39 -0.02 0.98 16 44 H 0.06 1.10 8.05 -2.38 -0.02 1.08 16 45 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.08 1.15 7.97 -2.39 -0.02 1.13 16 48 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 51 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.70 407.82 1.48 -70.22 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.41 Total: 35.47 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.64 Total: -6.62 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -3.49 Total: -116.47 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -3.14 Total: -35.78 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -71.70 1.48 -70.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716770787.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.274 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds