Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46799 * 2 1 4 4 C 1.53001 * 109.47042 * 120.00083 * 2 1 3 5 5 N 1.46500 * 109.46746 * 174.99884 * 4 2 1 6 6 C 1.34782 * 119.99674 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99888 * 5.07783 * 6 5 4 8 8 N 1.34779 * 119.99677 * 185.07410 * 6 5 4 9 9 C 1.46928 * 120.63092 * 354.96784 * 8 6 5 10 10 C 1.53194 * 108.77288 * 126.43473 * 9 8 6 11 11 C 1.53045 * 109.31360 * 54.63355 * 10 9 8 12 12 C 1.53045 * 109.53677 * 298.63473 * 11 10 9 13 13 H 1.09003 * 109.49626 * 301.38327 * 12 11 10 14 14 C 1.53000 * 109.49464 * 181.31449 * 12 11 10 15 15 C 1.50697 * 109.46710 * 175.06419 * 14 12 11 16 16 O 1.20826 * 120.00429 * 0.02562 * 15 14 12 17 17 O 1.34233 * 119.99870 * 180.02562 * 15 14 12 18 18 C 1.45202 * 117.00167 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.46954 * 30.00372 * 18 17 15 20 20 C 1.53007 * 109.47109 * 270.00270 * 18 17 15 21 21 C 1.50697 * 109.46991 * 150.00009 * 18 17 15 22 22 H 1.07995 * 120.00158 * 359.72570 * 21 18 17 23 23 C 1.37883 * 120.00043 * 179.97438 * 21 18 17 24 24 N 1.31514 * 119.99487 * 0.02562 * 23 21 18 25 25 Si 1.86791 * 120.00293 * 180.02562 * 23 21 18 26 26 H 1.48503 * 109.47111 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47319 * 120.00172 * 25 23 21 28 28 H 1.48501 * 109.47197 * 240.00273 * 25 23 21 29 29 C 1.46934 * 120.59916 * 174.99191 * 8 6 5 30 30 H 1.08996 * 109.47066 * 300.00114 * 1 2 3 31 31 H 1.08995 * 109.46898 * 59.99879 * 1 2 3 32 32 H 1.08998 * 109.47072 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46888 * 240.00409 * 2 1 3 34 34 H 1.08999 * 109.47005 * 299.99744 * 3 2 1 35 35 H 1.08995 * 109.47066 * 60.00518 * 3 2 1 36 36 H 1.09004 * 109.46986 * 180.02562 * 3 2 1 37 37 H 1.08993 * 109.46922 * 54.99886 * 4 2 1 38 38 H 1.08996 * 109.46722 * 294.99985 * 4 2 1 39 39 H 0.96997 * 120.00309 * 0.02562 * 5 4 2 40 40 H 1.08997 * 109.58739 * 6.64659 * 9 8 6 41 41 H 1.08998 * 109.58523 * 246.22133 * 9 8 6 42 42 H 1.09001 * 109.49720 * 294.68182 * 10 9 8 43 43 H 1.08995 * 109.49736 * 174.58845 * 10 9 8 44 44 H 1.09000 * 109.46140 * 178.61869 * 11 10 9 45 45 H 1.08997 * 109.45829 * 58.65617 * 11 10 9 46 46 H 1.08999 * 109.47132 * 55.06565 * 14 12 11 47 47 H 1.08992 * 109.47127 * 295.06421 * 14 12 11 48 48 H 1.09003 * 109.46823 * 180.02562 * 20 18 17 49 49 H 1.08996 * 109.46753 * 299.99432 * 20 18 17 50 50 H 1.08992 * 109.47207 * 59.99836 * 20 18 17 51 51 H 0.97007 * 119.99718 * 179.97438 * 24 23 21 52 52 H 1.08996 * 109.55901 * 113.76794 * 29 8 6 53 53 H 1.08992 * 109.61561 * 353.33390 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1911 7 8 3.5645 -1.9651 3.0965 8 7 5.5209 -1.4352 2.1880 9 6 6.2697 -0.8886 1.0482 10 6 7.2687 0.1504 1.5672 11 6 8.1454 -0.4862 2.6482 12 6 7.2682 -0.9391 3.8176 13 1 6.7268 -0.0826 4.2193 14 6 8.1490 -1.5456 4.9117 15 6 7.3007 -1.8803 6.1114 16 8 6.1134 -1.6571 6.0931 17 8 7.8642 -2.4263 7.2005 18 6 6.9866 -2.7219 8.3189 19 1 5.9882 -2.9511 7.9466 20 6 6.9183 -1.5082 9.2482 21 6 7.5235 -3.9071 9.0792 22 1 8.4309 -4.3927 8.7518 23 6 6.8535 -4.3747 10.1899 24 7 5.7457 -3.7867 10.5854 25 14 7.5194 -5.8434 11.1327 26 1 8.7692 -6.3202 10.4879 27 1 7.8060 -5.4436 12.5338 28 1 6.5119 -6.9344 11.1254 29 6 6.2686 -1.9903 3.3246 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6054 -1.7197 1.2951 38 1 1.7517 -0.1583 2.1369 39 1 3.9825 -0.4622 0.4319 40 1 5.5791 -0.4149 0.3506 41 1 6.8069 -1.6923 0.5447 42 1 6.7269 0.9966 1.9899 43 1 7.8965 0.4938 0.7451 44 1 8.8734 0.2439 3.0019 45 1 8.6679 -1.3472 2.2314 46 1 8.9175 -0.8280 5.1989 47 1 8.6215 -2.4532 4.5362 48 1 6.2598 -1.7303 10.0880 49 1 7.9167 -1.2791 9.6205 50 1 6.5300 -0.6510 8.6983 51 1 5.2741 -4.1159 11.3666 52 1 6.8054 -2.8841 3.0068 53 1 5.5777 -2.2429 4.1288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122572867.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -160.591235 kcal Electronic energy + Delta-G solvation = -30734.676222 eV Core-core repulsion = 26604.750205 eV Total energy + Delta-G solvation = -4129.926017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.75509 -41.14876 -39.04774 -37.67243 -37.46499 -35.33988 -35.16407 -33.82495 -32.81466 -31.71995 -29.00609 -28.06749 -27.51743 -27.45208 -25.66853 -24.37097 -23.11104 -21.88205 -21.50228 -21.01619 -20.46922 -19.09863 -18.80595 -18.38906 -17.62355 -17.23966 -16.95570 -16.81360 -16.31601 -15.97968 -15.81779 -15.53346 -15.35597 -14.95995 -14.71621 -14.40784 -14.20717 -14.17965 -14.05246 -13.86895 -13.68818 -13.51318 -13.33615 -13.19362 -12.97986 -12.92929 -12.82131 -12.66727 -12.40712 -12.14728 -12.11906 -12.03288 -11.89253 -11.84160 -11.81388 -11.65665 -11.63771 -11.55215 -11.21572 -11.10891 -10.93139 -10.61593 -10.28634 -9.49050 -8.30272 -6.47778 1.39133 1.41201 1.42195 1.55479 1.57924 2.07262 2.09258 2.42056 2.91387 3.00194 3.67335 3.74768 3.77020 3.82096 3.92501 4.02645 4.10070 4.10681 4.26394 4.32619 4.50061 4.54428 4.56061 4.61927 4.64437 4.66363 4.72862 4.74693 4.77662 4.81284 4.83315 4.91750 4.94037 4.97027 5.01547 5.07684 5.14426 5.18379 5.19219 5.29668 5.34904 5.38771 5.47180 5.48568 5.50560 5.54708 5.62010 5.90884 5.93139 6.13562 6.59417 6.95526 7.02036 7.25348 7.52908 8.77947 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002399 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.232124 B =11668.079842 C =12972.388258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.147 4.147 4 C 0.138 3.862 5 N -0.728 5.728 6 C 0.692 3.308 7 O -0.644 6.644 8 N -0.625 5.625 9 C 0.103 3.897 10 C -0.129 4.129 11 C -0.107 4.107 12 C -0.081 4.081 13 H 0.054 0.946 14 C -0.097 4.097 15 C 0.434 3.566 16 O -0.552 6.552 17 O -0.365 6.365 18 C 0.217 3.783 19 H -0.002 1.002 20 C -0.140 4.140 21 C -0.546 4.546 22 H 0.070 0.930 23 C 0.010 3.990 24 N -0.920 5.920 25 Si 0.987 3.013 26 H -0.260 1.260 27 H -0.270 1.270 28 H -0.278 1.278 29 C 0.124 3.876 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.410 0.590 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.137 0.863 47 H 0.130 0.870 48 H 0.078 0.922 49 H 0.049 0.951 50 H 0.019 0.981 51 H 0.270 0.730 52 H 0.076 0.924 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 11.413 -28.934 31.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.204 4.204 4 C 0.014 3.986 5 N -0.388 5.388 6 C 0.393 3.607 7 O -0.526 6.526 8 N -0.361 5.361 9 C -0.018 4.018 10 C -0.167 4.167 11 C -0.144 4.144 12 C -0.101 4.101 13 H 0.072 0.928 14 C -0.135 4.135 15 C 0.279 3.721 16 O -0.443 6.443 17 O -0.282 6.282 18 C 0.163 3.837 19 H 0.016 0.984 20 C -0.198 4.198 21 C -0.583 4.583 22 H 0.089 0.911 23 C -0.189 4.189 24 N -0.558 5.558 25 Si 0.810 3.190 26 H -0.183 1.183 27 H -0.195 1.195 28 H -0.203 1.203 29 C 0.000 4.000 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.250 0.750 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.132 0.868 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.155 0.845 47 H 0.148 0.852 48 H 0.097 0.903 49 H 0.068 0.932 50 H 0.038 0.962 51 H 0.079 0.921 52 H 0.094 0.906 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.385 11.100 -28.131 30.273 hybrid contribution -0.513 -0.609 1.075 1.338 sum 0.872 10.491 -27.055 29.031 Atomic orbital electron populations 1.21780 0.93476 1.02333 1.02777 1.21311 0.97073 0.96823 0.96236 1.21869 1.01248 0.94881 1.02446 1.21343 0.78314 0.99922 0.99015 1.45100 1.07785 1.62591 1.23339 1.16256 0.82418 0.79496 0.82554 1.90949 1.68736 1.52609 1.40303 1.47318 1.03052 1.64352 1.21393 1.22043 0.95170 0.97796 0.86836 1.21925 0.97730 0.97302 0.99746 1.21587 0.97136 1.02263 0.93411 1.21304 0.95748 0.97545 0.95477 0.92783 1.21593 0.97883 1.05666 0.88313 1.24906 0.88133 0.73452 0.85624 1.90646 1.19269 1.51441 1.82976 1.86463 1.44451 1.72046 1.25210 1.20273 0.88320 0.94674 0.80405 0.98406 1.21955 1.01245 0.95607 1.00947 1.21347 1.11341 1.13551 1.12082 0.91149 1.25941 0.94783 1.00568 0.97594 1.70056 1.17568 1.42090 1.26126 0.85073 0.78542 0.77378 0.78022 1.18327 1.19478 1.20343 1.21624 0.94293 0.95886 0.88210 0.92995 0.90353 0.92551 0.88905 0.90608 0.93536 0.92250 0.93303 0.93957 0.74968 0.88701 0.89074 0.92637 0.86774 0.89251 0.89210 0.84533 0.85203 0.90338 0.93197 0.96158 0.92068 0.90630 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.19 71.98 0.66 -1.00 16 2 C -0.10 -1.16 2.96 -10.79 -0.03 -1.19 16 3 C -0.15 -1.51 9.07 71.98 0.65 -0.86 16 4 C 0.14 2.95 5.07 86.38 0.44 3.39 16 5 N -0.73 -15.71 5.20 -478.54 -2.49 -18.20 16 6 C 0.69 22.29 8.29 179.05 1.49 23.78 16 7 O -0.64 -29.58 15.78 -3.99 -0.06 -29.65 16 8 N -0.62 -16.11 2.97 -836.88 -2.49 -18.60 16 9 C 0.10 1.31 6.43 86.36 0.56 1.87 16 10 C -0.13 -1.34 6.08 30.67 0.19 -1.15 16 11 C -0.11 -1.39 5.17 30.62 0.16 -1.23 16 12 C -0.08 -2.01 1.98 -10.71 -0.02 -2.03 16 13 H 0.05 1.66 7.96 -2.39 -0.02 1.64 16 14 C -0.10 -2.57 5.29 29.85 0.16 -2.41 16 15 C 0.43 18.83 7.68 71.23 0.55 19.38 16 16 O -0.55 -28.86 13.21 21.96 0.29 -28.57 16 17 O -0.37 -18.27 9.86 -51.45 -0.51 -18.77 16 18 C 0.22 12.66 2.56 29.85 0.08 12.74 16 19 H 0.00 -0.13 7.16 -2.39 -0.02 -0.14 16 20 C -0.14 -7.65 9.33 71.98 0.67 -6.98 16 21 C -0.55 -32.36 8.90 25.60 0.23 -32.13 16 22 H 0.07 4.04 7.81 -2.91 -0.02 4.02 16 23 C 0.01 0.59 5.30 84.66 0.45 1.04 16 24 N -0.92 -55.72 11.32 21.45 0.24 -55.48 16 25 Si 0.99 44.53 29.54 68.60 2.03 46.55 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 29 C 0.12 3.80 5.37 86.36 0.46 4.27 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.54 7.18 -2.39 -0.02 0.52 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.41 5.45 5.11 -92.71 -0.47 4.97 16 40 H 0.09 0.75 5.57 -2.39 -0.01 0.73 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 46 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 48 H 0.08 4.61 6.07 -2.39 -0.01 4.59 16 49 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 52 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.06 2.46 5.00 -2.39 -0.01 2.45 16 Total: -1.00 -88.23 414.57 4.10 -84.13 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.41 Total: 21.10 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.68 Total: 17.48 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -4.73 Total: -92.28 kcal Atomic # 8 Polarization: -76.71 SS G_CDS: -0.28 Total: -76.99 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -88.23 4.10 -84.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122572867.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.462 kcal (2) G-P(sol) polarization free energy of solvation -88.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds