Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 O 1.21291 * 119.99692 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99911 * 180.02562 * 5 4 2 8 8 C 1.37098 * 119.99819 * 180.02562 * 7 5 4 9 9 H 1.08006 * 119.99951 * 359.97438 * 8 7 5 10 10 C 1.38953 * 120.00107 * 179.97438 * 8 7 5 11 11 N 1.31411 * 120.00092 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00020 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46973 * 60.00081 * 12 10 8 14 14 H 1.48494 * 109.47265 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47054 * 300.00270 * 12 10 8 16 16 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 17 17 H 1.08995 * 109.49763 * 300.00647 * 16 2 1 18 18 C 1.53039 * 109.49590 * 179.97438 * 16 2 1 19 19 C 1.53043 * 109.53623 * 178.71918 * 18 16 2 20 20 C 1.53186 * 109.34134 * 61.31698 * 19 18 16 21 21 N 1.46923 * 108.77469 * 305.38086 * 20 19 18 22 22 C 1.34782 * 120.62840 * 233.58596 * 21 20 19 23 23 O 1.21513 * 119.99752 * 180.02562 * 22 21 20 24 24 O 1.34639 * 120.00144 * 0.02592 * 22 21 20 25 25 C 1.45199 * 116.99783 * 179.97438 * 24 22 21 26 26 C 1.53001 * 109.47157 * 59.99944 * 25 24 22 27 27 C 1.53001 * 109.46783 * 179.97438 * 25 24 22 28 28 C 1.52992 * 109.47529 * 299.99808 * 25 24 22 29 29 C 1.46923 * 118.74213 * 53.60741 * 21 20 19 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 34 34 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 35 35 H 0.97000 * 120.00167 * 0.02562 * 7 5 4 36 36 H 0.96990 * 120.00052 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.46057 * 298.70106 * 18 16 2 38 38 H 1.08999 * 109.46169 * 58.66685 * 18 16 2 39 39 H 1.09002 * 109.47150 * 301.35999 * 19 18 16 40 40 H 1.09004 * 109.52091 * 181.30489 * 19 18 16 41 41 H 1.09000 * 109.58455 * 185.59345 * 20 19 18 42 42 H 1.08999 * 109.70645 * 65.23646 * 20 19 18 43 43 H 1.09000 * 109.47261 * 59.99533 * 26 25 24 44 44 H 1.08996 * 109.47477 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.47403 * 300.00114 * 26 25 24 46 46 H 1.09000 * 109.47105 * 60.00579 * 27 25 24 47 47 H 1.09002 * 109.47079 * 180.02562 * 27 25 24 48 48 H 1.09000 * 109.47249 * 300.00230 * 27 25 24 49 49 H 1.09007 * 109.47116 * 60.00171 * 28 25 24 50 50 H 1.09002 * 109.47306 * 180.02562 * 28 25 24 51 51 H 1.09002 * 109.47220 * 300.00648 * 28 25 24 52 52 H 1.09004 * 109.59062 * 186.60524 * 29 21 20 53 53 H 1.09005 * 109.58287 * 66.17926 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0871 2.3633 7 7 1.9852 -0.3914 3.7001 8 6 1.6221 0.3164 4.8167 9 1 1.0608 1.2336 4.7158 10 6 1.9762 -0.1462 6.0782 11 7 2.6597 -1.2619 6.2010 12 14 1.4809 0.8179 7.5996 13 1 0.0008 0.9233 7.6586 14 1 1.9765 0.1183 8.8121 15 1 2.0720 2.1788 7.5375 16 6 2.0401 -0.7213 -1.2492 17 1 1.6769 -1.7490 -1.2496 18 6 3.5704 -0.7211 -1.2501 19 6 4.0816 -1.4701 -2.4829 20 6 3.5966 -0.7555 -3.7481 21 7 2.1347 -0.6233 -3.6855 22 6 1.3613 -1.0667 -4.6963 23 8 0.1533 -0.9512 -4.6328 24 8 1.9271 -1.6377 -5.7764 25 6 1.0328 -2.0925 -6.8261 26 6 0.2298 -0.9054 -7.3618 27 6 1.8518 -2.7080 -7.9625 28 6 0.0747 -3.1426 -6.2605 29 6 1.5319 0.0019 -2.5004 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 2.4897 -1.2149 3.7907 36 1 2.9065 -1.5849 7.0816 37 1 3.9334 0.3065 -1.2738 38 1 3.9342 -1.2138 -0.3484 39 1 3.6993 -2.4908 -2.4723 40 1 5.1714 -1.4899 -2.4712 41 1 3.8736 -1.3389 -4.6262 42 1 4.0507 0.2336 -3.8084 43 1 0.9124 -0.1572 -7.7648 44 1 -0.4411 -1.2467 -8.1501 45 1 -0.3535 -0.4665 -6.5525 46 1 2.4241 -3.5537 -7.5811 47 1 1.1806 -3.0490 -8.7507 48 1 2.5342 -1.9596 -8.3654 49 1 -0.5087 -2.7037 -5.4511 50 1 -0.5962 -3.4843 -7.0486 51 1 0.6468 -3.9883 -5.8788 52 1 0.4464 -0.0818 -2.5553 53 1 1.8177 1.0528 -2.4565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151302366.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -161.318772 kcal Electronic energy + Delta-G solvation = -30900.340419 eV Core-core repulsion = 26770.382853 eV Total energy + Delta-G solvation = -4129.957566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96344 -40.61864 -39.62985 -37.80129 -36.52184 -35.75150 -34.84988 -33.26173 -33.20461 -31.06303 -29.05557 -28.34607 -28.26559 -26.98230 -26.12419 -24.83117 -23.05677 -22.05041 -21.11599 -20.55226 -20.19167 -19.75608 -18.89367 -17.71708 -17.67948 -17.19678 -16.62122 -16.39393 -16.03027 -15.87459 -15.62163 -15.43096 -15.22050 -15.09989 -14.71271 -14.46971 -14.37034 -14.30011 -13.91455 -13.61089 -13.40204 -13.27418 -13.19120 -13.07338 -12.97829 -12.84077 -12.83661 -12.60248 -12.46869 -12.42658 -12.32695 -12.23986 -12.12618 -12.05193 -11.76202 -11.53694 -11.48121 -11.36556 -11.33255 -11.11928 -10.99288 -10.18693 -9.96907 -9.71836 -8.44835 -5.93069 1.13424 1.39825 1.41266 1.52126 1.76613 2.10551 2.30852 2.84553 3.22872 3.25589 3.68398 3.77801 3.81446 3.83876 3.90219 3.97465 4.07493 4.19633 4.21198 4.33867 4.47094 4.48177 4.56632 4.60090 4.63236 4.70425 4.73188 4.78408 4.78921 4.80861 4.85726 4.86998 4.90350 4.90570 4.95350 5.05543 5.13983 5.14865 5.15515 5.30177 5.32888 5.36393 5.39663 5.43308 5.46863 5.50185 5.56658 5.63800 6.03268 6.34558 6.62552 7.15096 7.29030 7.60676 8.16512 8.72397 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.001993 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.053120 B =14048.780064 C =14420.245321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 H 0.065 0.935 4 C -0.117 4.117 5 C 0.439 3.561 6 O -0.626 6.626 7 N -0.577 5.577 8 C -0.333 4.333 9 H 0.078 0.922 10 C -0.015 4.015 11 N -0.921 5.921 12 Si 0.991 3.009 13 H -0.273 1.273 14 H -0.271 1.271 15 H -0.272 1.272 16 C -0.083 4.083 17 H 0.071 0.929 18 C -0.122 4.122 19 C -0.126 4.126 20 C 0.108 3.892 21 N -0.593 5.593 22 C 0.646 3.354 23 O -0.597 6.597 24 O -0.363 6.363 25 C 0.124 3.876 26 C -0.179 4.179 27 C -0.134 4.134 28 C -0.180 4.180 29 C 0.134 3.866 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.089 0.911 51 H 0.060 0.940 52 H 0.081 0.919 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -5.642 -28.039 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 H 0.084 0.916 4 C -0.156 4.156 5 C 0.228 3.772 6 O -0.514 6.514 7 N -0.214 5.214 8 C -0.463 4.463 9 H 0.096 0.904 10 C -0.215 4.215 11 N -0.562 5.562 12 Si 0.815 3.185 13 H -0.199 1.199 14 H -0.195 1.195 15 H -0.197 1.197 16 C -0.102 4.102 17 H 0.090 0.910 18 C -0.159 4.159 19 C -0.164 4.164 20 C -0.013 4.013 21 N -0.333 5.333 22 C 0.401 3.599 23 O -0.489 6.489 24 O -0.278 6.278 25 C 0.088 3.912 26 C -0.236 4.236 27 C -0.191 4.191 28 C -0.237 4.237 29 C 0.012 3.988 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.108 0.892 51 H 0.080 0.920 52 H 0.099 0.901 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.854 -5.075 -28.017 28.733 hybrid contribution -0.357 0.092 1.297 1.348 sum 3.496 -4.983 -26.721 27.405 Atomic orbital electron populations 1.21907 0.95829 1.01164 1.01694 1.20660 0.95533 0.99060 0.91932 0.91633 1.21606 1.03266 0.99415 0.91359 1.21048 0.83394 0.87389 0.85412 1.90457 1.45715 1.28123 1.87069 1.42019 1.50079 1.24321 1.04945 1.19638 1.34312 1.07165 0.85180 0.90355 1.26027 0.96531 0.97417 1.01481 1.69664 1.38804 1.21752 1.25986 0.85016 0.78543 0.78096 0.76849 1.19871 1.19534 1.19681 1.21437 0.96971 0.99496 0.92293 0.91011 1.21713 0.93416 1.01765 0.99003 1.21886 1.02243 0.99094 0.93189 1.21942 0.77277 1.02204 0.99889 1.47112 1.07943 1.61254 1.16955 1.18177 0.83893 0.77059 0.80725 1.90886 1.14139 1.62574 1.81267 1.86291 1.41659 1.72095 1.27748 1.22404 0.89551 0.94305 0.84981 1.22461 1.00932 0.97891 1.02338 1.21866 1.00627 1.01267 0.95293 1.22465 0.99974 0.98274 1.02965 1.21686 0.98926 0.96292 0.81854 0.92224 0.93144 0.93608 0.89074 0.87752 0.77077 0.91385 0.91047 0.90552 0.91960 0.88190 0.88481 0.89895 0.91891 0.89203 0.92304 0.91146 0.88123 0.91033 0.92337 0.89199 0.92047 0.90079 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 8.59 71.98 0.62 -4.25 16 2 C -0.05 -1.55 1.62 -10.79 -0.02 -1.57 16 3 H 0.07 2.13 7.96 -2.39 -0.02 2.11 16 4 C -0.12 -3.84 4.96 29.85 0.15 -3.69 16 5 C 0.44 20.57 7.50 87.66 0.66 21.23 16 6 O -0.63 -33.78 13.54 -3.07 -0.04 -33.82 16 7 N -0.58 -29.69 5.29 -306.98 -1.62 -31.31 16 8 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 9 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 10 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 11 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 12 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 16 C -0.08 -1.87 1.92 -10.72 -0.02 -1.89 16 17 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 18 C -0.12 -2.21 4.86 30.62 0.15 -2.06 16 19 C -0.13 -1.79 6.08 30.67 0.19 -1.60 16 20 C 0.11 1.65 6.45 86.36 0.56 2.21 16 21 N -0.59 -12.85 2.97 -949.25 -2.82 -15.67 16 22 C 0.65 16.26 7.74 129.79 1.00 17.27 16 23 O -0.60 -18.26 11.29 19.80 0.22 -18.04 16 24 O -0.36 -7.62 8.53 -55.48 -0.47 -8.10 16 25 C 0.12 2.08 1.13 -10.80 -0.01 2.07 16 26 C -0.18 -3.05 8.37 71.98 0.60 -2.45 16 27 C -0.13 -1.32 8.85 71.98 0.64 -0.68 16 28 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 29 C 0.13 3.11 5.19 86.36 0.45 3.56 16 30 H 0.06 1.76 6.57 -2.39 -0.02 1.74 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.86 5.95 -2.39 -0.01 1.85 16 33 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.10 2.94 6.15 -2.38 -0.01 2.93 16 35 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 36 H 0.28 14.12 8.31 -92.72 -0.77 13.35 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.40 6.26 -2.39 -0.01 1.38 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.34 6.93 -2.39 -0.02 1.33 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.06 1.42 5.88 -2.38 -0.01 1.40 16 50 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.08 2.21 5.62 -2.39 -0.01 2.20 16 53 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -70.48 405.04 4.59 -65.90 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: 0.17 Total: 38.44 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.84 Total: 7.03 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -4.16 Total: -96.74 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -0.29 Total: -59.96 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -70.48 4.59 -65.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151302366.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.422 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds