Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46669 * 2 1 4 4 C 1.52997 * 109.47594 * 239.99401 * 2 1 3 5 5 C 1.50703 * 109.46876 * 64.99880 * 4 2 1 6 6 O 1.21288 * 119.99954 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00189 * 179.97438 * 5 4 2 8 8 C 1.37088 * 120.00483 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99808 * 0.02562 * 8 7 5 10 10 C 1.38955 * 120.00477 * 180.02562 * 8 7 5 11 11 N 1.31411 * 119.99954 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 119.99661 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47103 * 90.00103 * 12 10 8 14 14 H 1.48499 * 109.47206 * 210.00396 * 12 10 8 15 15 H 1.48508 * 109.47252 * 330.00474 * 12 10 8 16 16 C 1.52998 * 109.47255 * 119.99087 * 2 1 3 17 17 H 1.09006 * 109.49670 * 60.06846 * 16 2 1 18 18 C 1.53044 * 109.49968 * 300.00924 * 16 2 1 19 19 C 1.53039 * 109.53799 * 178.64917 * 18 16 2 20 20 C 1.53188 * 109.31336 * 61.36307 * 19 18 16 21 21 N 1.46925 * 108.77707 * 305.36259 * 20 19 18 22 22 C 1.34777 * 120.63467 * 233.59129 * 21 20 19 23 23 O 1.21507 * 120.00068 * 179.97438 * 22 21 20 24 24 O 1.34644 * 119.99419 * 359.97438 * 22 21 20 25 25 C 1.45206 * 116.99182 * 180.02562 * 24 22 21 26 26 C 1.52997 * 109.47226 * 60.00595 * 25 24 22 27 27 C 1.52992 * 109.47178 * 300.00057 * 25 24 22 28 28 C 1.53006 * 109.46497 * 180.02562 * 25 24 22 29 29 C 1.46923 * 118.73762 * 53.86198 * 21 20 19 30 30 H 1.09003 * 109.46669 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47906 * 300.00575 * 1 2 3 32 32 H 1.09006 * 109.47277 * 60.00780 * 1 2 3 33 33 H 1.09000 * 109.46785 * 184.99330 * 4 2 1 34 34 H 1.08996 * 109.47190 * 305.00437 * 4 2 1 35 35 H 0.96998 * 119.99516 * 0.02562 * 7 5 4 36 36 H 0.97000 * 119.99193 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.46213 * 58.62724 * 18 16 2 38 38 H 1.08997 * 109.45563 * 298.66568 * 18 16 2 39 39 H 1.09006 * 109.49582 * 301.40918 * 19 18 16 40 40 H 1.09002 * 109.52061 * 181.33301 * 19 18 16 41 41 H 1.09006 * 109.58440 * 185.57854 * 20 19 18 42 42 H 1.08997 * 109.58636 * 65.15266 * 20 19 18 43 43 H 1.09002 * 109.47153 * 299.99431 * 26 25 24 44 44 H 1.09001 * 109.46832 * 179.97438 * 26 25 24 45 45 H 1.09004 * 109.47261 * 59.99603 * 26 25 24 46 46 H 1.09001 * 109.47066 * 180.02562 * 27 25 24 47 47 H 1.08996 * 109.47747 * 300.00217 * 27 25 24 48 48 H 1.09002 * 109.47103 * 60.00629 * 27 25 24 49 49 H 1.08993 * 109.46955 * 300.00264 * 28 25 24 50 50 H 1.09000 * 109.47050 * 60.00093 * 28 25 24 51 51 H 1.09001 * 109.47002 * 179.97438 * 28 25 24 52 52 H 1.09002 * 109.58690 * 65.92583 * 29 21 20 53 53 H 1.09001 * 109.59244 * 186.35528 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3916 -3.7001 8 6 1.6233 0.3165 -4.8166 9 1 1.0625 1.2340 -4.7158 10 6 1.9775 -0.1461 -6.0781 11 7 1.6307 0.5330 -7.1483 12 14 2.9480 -1.7327 -6.2524 13 1 2.0088 -2.8771 -6.3690 14 1 3.7966 -1.6627 -7.4689 15 1 3.8099 -1.9196 -5.0576 16 6 2.0400 -0.7210 1.2493 17 1 1.6779 -1.7492 1.2493 18 6 1.5300 0.0000 2.4993 19 6 2.0118 -0.7399 3.7493 20 6 3.5433 -0.7376 3.7807 21 7 4.0432 -1.2978 2.5178 22 6 4.9176 -2.3234 2.5199 23 8 5.3232 -2.7781 1.4686 24 8 5.3418 -2.8439 3.6870 25 6 6.2839 -3.9464 3.6132 26 6 7.5484 -3.4887 2.8835 27 6 5.6480 -5.1104 2.8506 28 6 6.6474 -4.4020 5.0279 29 6 3.5762 -0.7149 1.2526 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 3.1264 -0.7994 -1.2054 34 1 1.6055 -1.7198 -1.2950 35 1 2.4894 -1.2155 -3.7905 36 1 1.8778 0.2098 -8.0289 37 1 0.4403 0.0211 2.4871 38 1 1.9128 1.0205 2.5113 39 1 1.6499 -1.7679 3.7257 40 1 1.6288 -0.2398 4.6388 41 1 3.8926 -1.3469 4.6144 42 1 3.9048 0.2843 3.8957 43 1 7.2891 -3.1644 1.8757 44 1 8.2557 -4.3162 2.8285 45 1 8.0014 -2.6594 3.4268 46 1 6.3551 -5.9382 2.7956 47 1 4.7472 -5.4365 3.3704 48 1 5.3887 -4.7861 1.8428 49 1 7.1002 -3.5728 5.5714 50 1 5.7464 -4.7281 5.5473 51 1 7.3543 -5.2299 4.9725 52 1 3.9404 0.3088 1.1655 53 1 3.9471 -1.3091 0.4175 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151302432.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -156.587348 kcal Electronic energy + Delta-G solvation = -31260.925905 eV Core-core repulsion = 27131.173510 eV Total energy + Delta-G solvation = -4129.752396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.95619 -40.70966 -39.68701 -37.81084 -36.55090 -35.79979 -34.85213 -33.75706 -33.22408 -30.97433 -29.33639 -28.34352 -28.26475 -26.85358 -26.05712 -24.74624 -23.09553 -22.08691 -21.18691 -20.78024 -20.21875 -19.96076 -18.90158 -17.72146 -17.62618 -17.20809 -16.83671 -16.43468 -16.04793 -15.82437 -15.50014 -15.40693 -15.28893 -14.94113 -14.85026 -14.53510 -14.37083 -14.31017 -14.24485 -13.87916 -13.56458 -13.29276 -13.22101 -13.08240 -12.92098 -12.85755 -12.83399 -12.58295 -12.44674 -12.41883 -12.29729 -12.24497 -12.07197 -12.00416 -11.74586 -11.55718 -11.51803 -11.37049 -11.35982 -11.14998 -10.98944 -10.30683 -10.20760 -9.70712 -8.42579 -6.01979 1.14196 1.28938 1.32133 1.40950 1.77765 1.97367 2.20534 2.84969 2.95374 3.14681 3.70276 3.77744 3.78445 3.82520 3.85967 3.97615 4.08057 4.10707 4.20140 4.32718 4.36450 4.48958 4.55448 4.61491 4.63402 4.63527 4.72799 4.78610 4.79997 4.81373 4.85769 4.87769 4.89918 4.90813 4.96977 5.04405 5.11463 5.15097 5.15462 5.30580 5.32569 5.35308 5.40459 5.48016 5.53257 5.56558 5.58315 5.63413 5.96747 6.35160 6.58046 6.88300 7.30062 7.40659 7.97227 8.75062 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.002840 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.623884 B = 9858.377556 C =11785.606793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 H 0.064 0.936 4 C -0.126 4.126 5 C 0.452 3.548 6 O -0.613 6.613 7 N -0.597 5.597 8 C -0.325 4.325 9 H 0.059 0.941 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.959 3.041 13 H -0.257 1.257 14 H -0.273 1.273 15 H -0.238 1.238 16 C -0.082 4.082 17 H 0.076 0.924 18 C -0.116 4.116 19 C -0.126 4.126 20 C 0.107 3.893 21 N -0.592 5.592 22 C 0.645 3.355 23 O -0.596 6.596 24 O -0.363 6.363 25 C 0.125 3.875 26 C -0.180 4.180 27 C -0.180 4.180 28 C -0.134 4.134 29 C 0.127 3.873 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.387 0.613 36 H 0.279 0.721 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.099 0.901 52 H 0.077 0.923 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.497 -12.388 30.630 34.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 H 0.083 0.917 4 C -0.166 4.166 5 C 0.241 3.759 6 O -0.498 6.498 7 N -0.238 5.238 8 C -0.455 4.455 9 H 0.077 0.923 10 C -0.213 4.213 11 N -0.574 5.574 12 Si 0.779 3.221 13 H -0.181 1.181 14 H -0.198 1.198 15 H -0.162 1.162 16 C -0.101 4.101 17 H 0.094 0.906 18 C -0.154 4.154 19 C -0.164 4.164 20 C -0.014 4.014 21 N -0.332 5.332 22 C 0.401 3.599 23 O -0.488 6.488 24 O -0.278 6.278 25 C 0.089 3.911 26 C -0.238 4.238 27 C -0.237 4.237 28 C -0.191 4.191 29 C 0.005 3.995 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.222 0.778 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.090 0.910 51 H 0.118 0.882 52 H 0.095 0.905 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.258 -11.872 30.224 33.766 hybrid contribution 0.359 -0.415 -1.351 1.459 sum 9.617 -12.288 28.872 32.819 Atomic orbital electron populations 1.21885 0.94769 1.01574 1.02075 1.20710 0.96450 0.98884 0.91426 0.91738 1.21757 1.03097 1.00054 0.91703 1.21041 0.82653 0.87148 0.85037 1.90500 1.44666 1.27752 1.86888 1.42186 1.51744 1.24222 1.05646 1.19037 1.34493 1.07195 0.84750 0.92290 1.26040 0.98677 1.02581 0.93953 1.69796 1.47455 1.41254 0.98935 0.85444 0.79093 0.77842 0.79699 1.18133 1.19818 1.16167 1.21532 0.93444 1.00352 0.94770 0.90595 1.21653 1.01744 0.99293 0.92698 1.21889 0.94078 1.01407 0.98981 1.21952 0.95090 1.00009 0.84354 1.47099 1.44126 1.32616 1.09385 1.18196 0.79218 0.80131 0.82403 1.90897 1.61233 1.63694 1.32929 1.86289 1.60113 1.49842 1.31558 1.22384 0.86737 0.83249 0.98757 1.22473 0.96925 1.02871 1.01488 1.22469 1.01883 0.98019 1.01355 1.21866 1.03002 1.02514 0.91679 1.21882 0.94406 0.98663 0.84525 0.92561 0.90985 0.94143 0.88373 0.88097 0.77800 0.91195 0.90337 0.91198 0.91903 0.88153 0.88535 0.90043 0.92295 0.89287 0.91929 0.89321 0.91902 0.92247 0.91066 0.91041 0.88209 0.90478 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 8.58 71.98 0.62 -3.56 16 2 C -0.06 -1.51 1.62 -10.80 -0.02 -1.53 16 3 H 0.06 1.99 7.95 -2.39 -0.02 1.97 16 4 C -0.13 -4.00 4.97 29.85 0.15 -3.85 16 5 C 0.45 20.70 7.50 87.66 0.66 21.36 16 6 O -0.61 -33.20 13.54 -3.06 -0.04 -33.24 16 7 N -0.60 -29.30 5.09 -306.99 -1.56 -30.87 16 8 C -0.33 -19.48 10.16 84.04 0.85 -18.62 16 9 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 10 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 11 N -0.93 -57.31 13.96 21.66 0.30 -57.01 16 12 Si 0.96 40.74 27.74 68.60 1.90 42.65 16 13 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.24 -8.88 6.52 99.48 0.65 -8.23 16 16 C -0.08 -1.67 1.93 -10.57 -0.02 -1.69 16 17 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 18 C -0.12 -1.82 4.85 30.62 0.15 -1.67 16 19 C -0.13 -1.50 6.08 30.67 0.19 -1.32 16 20 C 0.11 1.50 6.44 86.36 0.56 2.05 16 21 N -0.59 -12.20 2.97 -948.40 -2.81 -15.01 16 22 C 0.65 15.80 7.74 129.79 1.00 16.80 16 23 O -0.60 -17.97 11.29 19.82 0.22 -17.74 16 24 O -0.36 -7.43 8.53 -55.53 -0.47 -7.90 16 25 C 0.13 2.08 1.13 -10.79 -0.01 2.07 16 26 C -0.18 -3.14 8.37 71.98 0.60 -2.53 16 27 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 28 C -0.13 -1.29 8.85 71.98 0.64 -0.65 16 29 C 0.13 2.79 5.23 86.51 0.45 3.25 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.69 6.40 -2.39 -0.02 1.67 16 32 H 0.04 1.53 5.95 -2.38 -0.01 1.52 16 33 H 0.10 2.80 6.31 -2.39 -0.02 2.79 16 34 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.39 16.28 5.76 -92.71 -0.53 15.75 16 36 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.08 1.18 6.36 -2.39 -0.02 1.17 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 1.22 6.93 -2.38 -0.02 1.21 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.42 5.88 -2.39 -0.01 1.40 16 44 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 49 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.08 2.13 5.51 -2.39 -0.01 2.12 16 Total: -1.00 -78.17 401.94 4.73 -73.44 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.31 Total: 38.41 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 6.88 Total: 7.26 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -4.07 Total: -102.88 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -0.29 Total: -58.88 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.90 Total: 42.65 kcal Total: -78.17 4.73 -73.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151302432.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.149 kcal (2) G-P(sol) polarization free energy of solvation -78.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds