Wall clock time and date at job start Sat Apr 11 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 O 1.21293 * 119.99617 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.37104 * 119.99918 * 179.97438 * 7 5 4 9 9 H 1.07996 * 119.99736 * 0.02562 * 8 7 5 10 10 C 1.38952 * 120.00085 * 179.97438 * 8 7 5 11 11 N 1.31406 * 119.99720 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99906 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47293 * 60.00405 * 12 10 8 14 14 H 1.48506 * 109.47160 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47089 * 300.00115 * 12 10 8 16 16 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 17 17 C 1.53041 * 109.46391 * 180.02562 * 16 2 1 18 18 C 1.53190 * 109.31163 * 178.60195 * 17 16 2 19 19 N 1.46929 * 108.76794 * 54.65901 * 18 17 16 20 20 C 1.34771 * 120.63270 * 126.40220 * 19 18 17 21 21 O 1.21507 * 120.00124 * 179.97438 * 20 19 18 22 22 O 1.34637 * 120.00004 * 359.97438 * 20 19 18 23 23 C 1.45200 * 116.99953 * 180.02562 * 22 20 19 24 24 C 1.52993 * 109.47030 * 60.00395 * 23 22 20 25 25 C 1.53007 * 109.46955 * 180.02562 * 23 22 20 26 26 C 1.52997 * 109.47274 * 299.99980 * 23 22 20 27 27 C 1.46929 * 118.73418 * 306.38435 * 19 18 17 28 28 C 1.53047 * 109.45869 * 59.97417 * 16 2 1 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 34 34 H 0.96996 * 120.00204 * 0.02562 * 7 5 4 35 35 H 0.97000 * 120.00137 * 179.97438 * 11 10 8 36 36 H 1.08995 * 109.46241 * 300.00609 * 16 2 1 37 37 H 1.08991 * 109.49676 * 298.56802 * 17 16 2 38 38 H 1.08996 * 109.49337 * 58.66731 * 17 16 2 39 39 H 1.09004 * 109.60289 * 294.86996 * 18 17 16 40 40 H 1.08997 * 109.70325 * 174.50754 * 18 17 16 41 41 H 1.08996 * 109.47134 * 60.00160 * 24 23 22 42 42 H 1.09005 * 109.47184 * 180.02562 * 24 23 22 43 43 H 1.08992 * 109.47357 * 299.99581 * 24 23 22 44 44 H 1.09004 * 109.46714 * 59.99923 * 25 23 22 45 45 H 1.08999 * 109.47075 * 179.97438 * 25 23 22 46 46 H 1.08990 * 109.47123 * 300.00329 * 25 23 22 47 47 H 1.08999 * 109.47082 * 60.00175 * 26 23 22 48 48 H 1.08999 * 109.47229 * 180.02562 * 26 23 22 49 49 H 1.08997 * 109.47839 * 300.00676 * 26 23 22 50 50 H 1.09000 * 109.58288 * 293.81288 * 27 19 18 51 51 H 1.09000 * 109.69893 * 173.46729 * 27 19 18 52 52 H 1.09005 * 109.49662 * 301.33910 * 28 16 2 53 53 H 1.08992 * 109.49727 * 61.40148 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0109 1.0870 2.3632 7 7 1.9845 -0.3919 3.7002 8 6 1.6223 0.3164 4.8167 9 1 1.0616 1.2340 4.7158 10 6 1.9755 -0.1467 6.0783 11 7 2.6572 -1.2634 6.2010 12 14 1.4814 0.8181 7.5995 13 1 0.0015 0.9257 7.6584 14 1 1.9758 0.1177 8.8121 15 1 2.0746 2.1780 7.5375 16 6 2.0400 -0.7213 -1.2492 17 6 3.5704 -0.7217 -1.2486 18 6 4.0773 -1.4750 -2.4825 19 7 3.4747 -0.8771 -3.6819 20 6 4.2482 -0.4584 -4.7030 21 8 3.7378 0.0339 -5.6896 22 8 5.5866 -0.5857 -4.6299 23 6 6.3568 -0.1127 -5.7663 24 6 6.0966 1.3807 -5.9727 25 6 7.8468 -0.3396 -5.5025 26 6 5.9387 -0.8815 -7.0213 27 6 2.0129 -0.7448 -3.7469 28 6 1.5292 -0.0001 -2.4987 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 2.4883 -1.2158 3.7908 35 1 2.9042 -1.5865 7.0816 36 1 1.6766 -1.7489 -1.2490 37 1 3.9345 0.3053 -1.2741 38 1 3.9337 -1.2148 -0.3470 39 1 3.7903 -2.5243 -2.4139 40 1 5.1628 -1.3961 -2.5410 41 1 6.3945 1.9284 -5.0787 42 1 6.6744 1.7357 -6.8261 43 1 5.0352 1.5420 -6.1608 44 1 8.0317 -1.4038 -5.3557 45 1 8.4249 0.0150 -6.3558 46 1 8.1449 0.2077 -4.6084 47 1 4.8772 -0.7203 -7.2094 48 1 6.5172 -0.5268 -7.8743 49 1 6.1240 -1.9455 -6.8743 50 1 1.5576 -1.7346 -3.7813 51 1 1.7341 -0.1832 -4.6385 52 1 0.4394 0.0206 -2.4868 53 1 1.9122 1.0202 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158303997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:36 Heat of formation + Delta-G solvation = -161.282855 kcal Electronic energy + Delta-G solvation = -30737.061917 eV Core-core repulsion = 26607.105909 eV Total energy + Delta-G solvation = -4129.956008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.93724 -40.60406 -39.61517 -37.91825 -36.43889 -35.74285 -34.89722 -33.25673 -32.22474 -32.02701 -29.05477 -28.34832 -28.27471 -26.80714 -26.29537 -24.31234 -23.33884 -22.03933 -21.10188 -20.52601 -20.19638 -19.74038 -18.95556 -17.74909 -17.57573 -17.25904 -16.58374 -16.22587 -16.15701 -15.80502 -15.53622 -15.45306 -15.18473 -14.95514 -14.87389 -14.78586 -14.39608 -13.92943 -13.87942 -13.60964 -13.48396 -13.29627 -13.07802 -13.03672 -12.88017 -12.84774 -12.82742 -12.69773 -12.44724 -12.42406 -12.31190 -12.26133 -12.12196 -12.10890 -11.81266 -11.51852 -11.36933 -11.35419 -11.29750 -11.09345 -10.92860 -10.16986 -9.96374 -9.71840 -8.44792 -5.92899 1.17759 1.39597 1.41060 1.51773 1.77299 2.11718 2.30858 2.85842 3.23240 3.26854 3.74992 3.79330 3.81772 3.82564 3.88633 3.97070 4.12421 4.14826 4.32946 4.40706 4.45175 4.52366 4.57035 4.59233 4.62991 4.70448 4.76022 4.78111 4.83746 4.85294 4.85973 4.89521 4.89847 4.96831 5.01210 5.05724 5.11990 5.14693 5.15687 5.29471 5.31835 5.35018 5.37769 5.42848 5.49103 5.57480 5.64715 5.70205 6.03945 6.34455 6.63277 7.15638 7.29401 7.61637 8.17914 8.72405 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.002035 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.462746 B =13754.698500 C =14510.917698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 H 0.046 0.954 4 C -0.119 4.119 5 C 0.437 3.563 6 O -0.629 6.629 7 N -0.577 5.577 8 C -0.334 4.334 9 H 0.077 0.923 10 C -0.014 4.014 11 N -0.920 5.920 12 Si 0.990 3.010 13 H -0.273 1.273 14 H -0.270 1.270 15 H -0.273 1.273 16 C -0.072 4.072 17 C -0.132 4.132 18 C 0.115 3.885 19 N -0.594 5.594 20 C 0.646 3.354 21 O -0.597 6.597 22 O -0.367 6.367 23 C 0.123 3.877 24 C -0.179 4.179 25 C -0.136 4.136 26 C -0.177 4.177 27 C 0.130 3.870 28 C -0.125 4.125 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.093 0.907 51 H 0.083 0.917 52 H 0.094 0.906 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.432 -4.961 -24.419 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 H 0.065 0.935 4 C -0.159 4.159 5 C 0.226 3.774 6 O -0.517 6.517 7 N -0.214 5.214 8 C -0.463 4.463 9 H 0.095 0.905 10 C -0.214 4.214 11 N -0.561 5.561 12 Si 0.814 3.186 13 H -0.198 1.198 14 H -0.195 1.195 15 H -0.199 1.199 16 C -0.090 4.090 17 C -0.170 4.170 18 C -0.006 4.006 19 N -0.334 5.334 20 C 0.401 3.599 21 O -0.489 6.489 22 O -0.282 6.282 23 C 0.087 3.913 24 C -0.237 4.237 25 C -0.193 4.193 26 C -0.234 4.234 27 C 0.009 3.991 28 C -0.163 4.163 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.230 0.770 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.120 0.880 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.108 0.892 49 H 0.081 0.919 50 H 0.111 0.889 51 H 0.101 0.899 52 H 0.112 0.888 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.019 -4.235 -24.654 26.269 hybrid contribution -0.109 0.406 1.146 1.221 sum 7.910 -3.829 -23.508 25.097 Atomic orbital electron populations 1.21905 0.95316 1.01681 1.01583 1.20720 0.96013 0.98309 0.92464 0.93540 1.21661 1.03057 0.99789 0.91345 1.21165 0.83322 0.87399 0.85526 1.90458 1.45838 1.28256 1.87122 1.42028 1.50155 1.24287 1.04945 1.19618 1.34391 1.07079 0.85249 0.90525 1.26007 0.96551 0.97412 1.01431 1.69659 1.38829 1.21661 1.25988 0.85033 0.78592 0.78051 0.76931 1.19785 1.19479 1.19857 1.21135 0.94844 1.00402 0.92651 1.22058 0.95737 1.00868 0.98364 1.21851 0.98837 0.97615 0.82346 1.47191 1.06806 1.62664 1.16757 1.18195 0.81300 0.77397 0.82969 1.90861 1.74793 1.50476 1.32775 1.86307 1.16859 1.78233 1.46796 1.22396 0.91391 0.94136 0.83355 1.22462 1.03676 0.94463 1.03051 1.21877 0.89845 1.03582 1.03957 1.22444 1.03430 1.00335 0.97180 1.21711 0.76285 1.02065 0.99044 1.21997 1.02090 0.98798 0.93413 0.91692 0.94415 0.92053 0.88211 0.88229 0.77019 0.91369 0.88745 0.93066 0.88947 0.88994 0.89031 0.92498 0.89102 0.92067 0.91028 0.88024 0.91566 0.91985 0.89195 0.91857 0.88902 0.89893 0.88812 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 8.58 71.98 0.62 -3.73 16 2 C -0.06 -1.58 1.62 -10.79 -0.02 -1.60 16 3 H 0.05 1.58 7.96 -2.39 -0.02 1.56 16 4 C -0.12 -3.75 4.96 29.85 0.15 -3.60 16 5 C 0.44 20.29 7.50 87.66 0.66 20.94 16 6 O -0.63 -33.98 13.54 -3.07 -0.04 -34.02 16 7 N -0.58 -29.44 5.29 -306.99 -1.62 -31.06 16 8 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 9 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 10 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 11 N -0.92 -49.65 13.05 21.66 0.28 -49.36 16 12 Si 0.99 43.12 29.55 68.60 2.03 45.14 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 C -0.07 -1.42 1.74 -10.76 -0.02 -1.43 16 17 C -0.13 -2.49 5.05 30.67 0.15 -2.33 16 18 C 0.12 1.90 6.45 86.36 0.56 2.46 16 19 N -0.59 -12.10 2.97 -949.27 -2.82 -14.93 16 20 C 0.65 15.73 7.74 129.79 1.00 16.73 16 21 O -0.60 -17.05 11.30 19.82 0.22 -16.82 16 22 O -0.37 -7.99 8.52 -55.46 -0.47 -8.46 16 23 C 0.12 2.13 1.13 -10.79 -0.01 2.12 16 24 C -0.18 -3.22 8.37 71.98 0.60 -2.62 16 25 C -0.14 -1.53 8.85 71.98 0.64 -0.89 16 26 C -0.18 -2.88 8.37 71.98 0.60 -2.27 16 27 C 0.13 2.35 6.43 86.36 0.56 2.90 16 28 C -0.12 -2.38 5.04 30.67 0.15 -2.23 16 29 H 0.06 1.63 6.40 -2.39 -0.02 1.61 16 30 H 0.04 1.46 5.95 -2.39 -0.01 1.44 16 31 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.10 2.74 6.14 -2.39 -0.01 2.72 16 34 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 35 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.60 6.25 -2.39 -0.01 1.59 16 39 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.09 1.51 6.92 -2.39 -0.02 1.50 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.06 1.45 5.88 -2.39 -0.01 1.43 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.08 1.71 7.01 -2.39 -0.02 1.70 16 52 H 0.09 1.61 6.36 -2.38 -0.02 1.59 16 53 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -71.13 404.67 4.67 -66.47 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.17 Total: 37.06 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.92 Total: 5.98 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -4.16 Total: -95.35 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -0.29 Total: -59.30 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.13 4.67 -66.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158303997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.818 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds