Wall clock time and date at job start Sat Apr 11 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.46964 * 209.99990 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 17 17 C 1.52998 * 109.47151 * 300.00325 * 15 13 12 18 18 C 1.53006 * 109.47016 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.46992 * 60.00280 * 18 17 15 20 20 C 1.53001 * 109.46839 * 300.00050 * 19 18 17 21 21 H 1.09005 * 109.46665 * 299.99546 * 20 19 18 22 22 N 1.46499 * 109.46986 * 180.02562 * 20 19 18 23 23 C 1.34780 * 120.00575 * 84.99540 * 22 20 19 24 24 O 1.21508 * 119.99795 * 359.97438 * 23 22 20 25 25 O 1.34636 * 120.00233 * 180.02562 * 23 22 20 26 26 C 1.45192 * 116.99766 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.47586 * 60.00153 * 26 25 23 28 28 C 1.53001 * 109.46884 * 179.97438 * 26 25 23 29 29 C 1.52999 * 109.47390 * 299.99655 * 26 25 23 30 30 C 1.52992 * 109.47385 * 180.02562 * 15 13 12 31 31 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 34 34 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 35 35 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 36 36 H 1.08993 * 109.47207 * 299.99904 * 17 15 13 37 37 H 1.09002 * 109.46901 * 59.99949 * 17 15 13 38 38 H 1.09001 * 109.47252 * 299.99979 * 18 17 15 39 39 H 1.09003 * 109.46560 * 180.02562 * 18 17 15 40 40 H 1.08992 * 109.47180 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.47368 * 59.99770 * 19 18 17 42 42 H 0.97007 * 119.99464 * 264.99760 * 22 20 19 43 43 H 1.08996 * 109.47161 * 59.99263 * 27 26 25 44 44 H 1.08997 * 109.47252 * 179.97438 * 27 26 25 45 45 H 1.09007 * 109.46669 * 300.00082 * 27 26 25 46 46 H 1.09001 * 109.47336 * 59.99898 * 28 26 25 47 47 H 1.09006 * 109.47157 * 179.97438 * 28 26 25 48 48 H 1.08997 * 109.47732 * 299.99766 * 28 26 25 49 49 H 1.09007 * 109.46741 * 59.99993 * 29 26 25 50 50 H 1.08997 * 109.47397 * 180.02562 * 29 26 25 51 51 H 1.09001 * 109.46923 * 300.00159 * 29 26 25 52 52 H 1.09007 * 109.47184 * 300.00285 * 30 15 13 53 53 H 1.09001 * 109.47135 * 60.00198 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 1 1.9759 -1.5504 -3.8327 17 6 4.0513 -1.2796 -3.3224 18 6 4.5605 -2.0014 -4.5717 19 6 4.6120 -1.0186 -5.7432 20 6 3.2095 -0.4676 -6.0085 21 1 2.5365 -1.2895 -6.2531 22 7 3.2587 0.4730 -7.1306 23 6 3.1786 0.0170 -8.3963 24 8 3.0661 -1.1744 -8.6069 25 8 3.2243 0.8814 -9.4275 26 6 3.1320 0.3196 -10.7632 27 6 1.8052 -0.4276 -10.9117 28 6 3.2006 1.4462 -11.7961 29 6 4.2924 -0.6516 -10.9893 30 6 2.7010 0.2547 -4.7588 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 0.7096 1.1617 3.4844 35 1 2.2491 -1.6316 -1.1527 36 1 4.7241 -0.4579 -3.0775 37 1 4.0145 -1.9801 -2.4881 38 1 3.8875 -2.8233 -4.8162 39 1 5.5594 -2.3943 -4.3824 40 1 4.9751 -1.5327 -6.6330 41 1 5.2850 -0.1968 -5.4987 42 1 3.3489 1.4241 -6.9625 43 1 0.9785 0.2643 -10.7506 44 1 1.7357 -0.8490 -11.9145 45 1 1.7558 -1.2302 -10.1757 46 1 4.1457 1.9789 -11.6906 47 1 3.1318 1.0244 -12.7989 48 1 2.3738 2.1378 -11.6351 49 1 4.2431 -1.4542 -10.2533 50 1 4.2234 -1.0731 -11.9921 51 1 5.2376 -0.1193 -10.8836 52 1 1.7020 0.6477 -4.9480 53 1 3.3741 1.0762 -4.5137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162289709.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:43 Heat of formation + Delta-G solvation = -171.789412 kcal Electronic energy + Delta-G solvation = -30547.843287 eV Core-core repulsion = 26417.431680 eV Total energy + Delta-G solvation = -4130.411607 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89658 -41.06357 -39.33514 -37.77356 -36.66144 -35.57261 -34.72691 -34.21960 -32.16640 -30.92922 -29.96777 -28.33113 -28.27083 -27.33242 -25.09654 -24.32154 -22.85191 -22.46254 -21.35911 -21.09766 -20.58170 -19.11870 -18.94776 -17.80343 -17.33130 -17.15932 -17.11629 -16.52887 -16.13780 -15.91810 -15.55495 -15.40625 -15.34347 -14.95422 -14.81186 -14.46878 -14.42417 -14.08841 -13.78938 -13.54985 -13.42843 -13.30500 -13.10085 -12.94670 -12.88251 -12.86227 -12.83698 -12.70840 -12.52911 -12.36423 -12.29863 -12.24847 -12.17645 -12.10367 -11.63510 -11.61405 -11.48601 -11.34677 -11.09525 -11.04324 -10.64067 -10.50458 -10.13149 -9.70553 -8.16332 -6.33542 1.17273 1.45985 1.46094 1.56920 1.78663 1.86014 2.36632 2.64488 3.13808 3.14796 3.63951 3.74275 3.78129 3.82236 3.83153 3.97727 4.06248 4.19387 4.29389 4.39624 4.43295 4.47289 4.57911 4.64562 4.65841 4.74731 4.77083 4.79376 4.86799 4.90436 4.92866 4.93917 5.04327 5.11032 5.11891 5.14864 5.15465 5.27640 5.28588 5.31216 5.31327 5.39604 5.45999 5.50644 5.61021 5.63839 5.71348 5.92713 6.11846 6.42527 6.74931 7.00802 7.34303 7.36434 7.60282 8.89882 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.001939 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.020258 B =14436.919307 C =14957.938158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.703 5.703 13 C 0.502 3.498 14 O -0.601 6.601 15 C -0.091 4.091 16 H 0.117 0.883 17 C -0.109 4.109 18 C -0.104 4.104 19 C -0.126 4.126 20 C 0.173 3.827 21 H 0.086 0.914 22 N -0.701 5.701 23 C 0.648 3.352 24 O -0.588 6.588 25 O -0.372 6.372 26 C 0.124 3.876 27 C -0.180 4.180 28 C -0.136 4.136 29 C -0.178 4.178 30 C -0.097 4.097 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.011 0.989 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.413 0.587 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.061 0.939 52 H 0.064 0.936 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -5.203 -26.760 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.582 4.582 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.183 1.183 12 N -0.352 5.352 13 C 0.289 3.711 14 O -0.483 6.483 15 C -0.112 4.112 16 H 0.135 0.865 17 C -0.147 4.147 18 C -0.142 4.142 19 C -0.164 4.164 20 C 0.070 3.930 21 H 0.104 0.896 22 N -0.359 5.359 23 C 0.401 3.599 24 O -0.479 6.479 25 O -0.287 6.287 26 C 0.088 3.912 27 C -0.237 4.237 28 C -0.193 4.193 29 C -0.235 4.235 30 C -0.135 4.135 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.249 0.751 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.121 0.879 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.108 0.892 51 H 0.080 0.920 52 H 0.082 0.918 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.381 -4.840 -26.839 28.253 hybrid contribution -0.010 0.162 1.272 1.282 sum 7.371 -4.677 -25.567 27.017 Atomic orbital electron populations 1.21902 0.98508 0.99408 0.99474 1.18316 0.90976 0.91907 0.82181 0.98509 1.21547 1.32399 1.13505 0.90730 0.90724 1.25816 0.94931 0.95633 1.02390 1.70056 1.37069 1.24010 1.24528 0.85344 0.77701 0.79244 0.78037 1.20403 1.21146 1.18289 1.46273 1.65005 1.14214 1.09708 1.21275 0.77146 0.86999 0.85671 1.90631 1.53254 1.18472 1.85980 1.21228 1.00025 0.98941 0.91032 0.86493 1.21573 0.93059 1.00511 0.99533 1.21438 1.02792 0.97576 0.92399 1.21928 0.95769 0.99702 0.99035 1.20904 0.98198 0.90959 0.82968 0.89567 1.44853 1.76735 1.12178 1.02167 1.18216 0.75926 0.83580 0.82159 1.90882 1.56215 1.16009 1.84818 1.86320 1.86134 1.40117 1.16111 1.22412 0.96543 0.95191 0.77098 1.22476 0.95741 1.01209 1.04292 1.21888 1.03540 0.96869 0.97048 1.22460 0.97143 0.99808 1.04121 1.21459 1.02196 0.97782 0.92089 0.91616 0.94095 0.97008 0.92632 0.75998 0.92117 0.90082 0.90447 0.89622 0.91711 0.91240 0.75095 0.92286 0.89078 0.91843 0.91225 0.87936 0.91447 0.91749 0.89154 0.92009 0.91771 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.13 16 2 C 0.27 13.87 2.56 44.24 0.11 13.98 16 3 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 4 C -0.54 -28.37 8.73 25.60 0.22 -28.14 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -52.59 11.32 21.45 0.24 -52.35 16 8 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 9 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 12 N -0.70 -28.22 4.96 -446.09 -2.21 -30.43 16 13 C 0.50 19.08 7.12 87.66 0.62 19.70 16 14 O -0.60 -28.61 15.65 -3.05 -0.05 -28.66 16 15 C -0.09 -2.30 2.53 -11.54 -0.03 -2.33 16 16 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 17 C -0.11 -2.27 5.10 30.60 0.16 -2.11 16 18 C -0.10 -1.68 5.92 30.60 0.18 -1.50 16 19 C -0.13 -2.27 5.49 30.59 0.17 -2.10 16 20 C 0.17 3.53 2.46 45.01 0.11 3.64 16 21 H 0.09 1.91 7.58 -2.38 -0.02 1.89 16 22 N -0.70 -14.23 5.08 -570.06 -2.90 -17.13 16 23 C 0.65 15.10 8.02 129.79 1.04 16.14 16 24 O -0.59 -15.90 11.54 19.81 0.23 -15.67 16 25 O -0.37 -7.83 9.94 -55.45 -0.55 -8.38 16 26 C 0.12 2.03 1.13 -10.79 -0.01 2.02 16 27 C -0.18 -2.98 8.37 71.98 0.60 -2.38 16 28 C -0.14 -1.43 8.85 71.98 0.64 -0.80 16 29 C -0.18 -2.79 8.37 71.98 0.60 -2.19 16 30 C -0.10 -2.34 3.96 30.60 0.12 -2.21 16 31 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.40 13.49 7.96 -92.71 -0.74 12.75 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.60 7.56 -2.39 -0.02 1.59 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.41 7.20 8.71 -92.70 -0.81 6.40 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.40 5.88 -2.38 -0.01 1.39 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.06 1.36 5.88 -2.38 -0.01 1.34 16 50 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.06 1.73 8.10 -2.38 -0.02 1.71 16 53 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 Total: -1.00 -69.97 414.12 1.80 -68.17 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.64 Total: 34.10 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 5.66 Total: 6.69 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -4.87 Total: -99.91 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.37 Total: -52.71 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -69.97 1.80 -68.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162289709.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.621 kcal (2) G-P(sol) polarization free energy of solvation -69.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds