Wall clock time and date at job start Sat Apr 11 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47532 * 2 1 4 4 C 1.50703 * 109.47581 * 240.00138 * 2 1 3 5 5 H 1.08002 * 120.00002 * 240.00579 * 4 2 1 6 6 C 1.37879 * 119.99831 * 59.99338 * 4 2 1 7 7 N 1.31510 * 119.99845 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46923 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47257 * 120.00438 * 8 6 4 11 11 H 1.48502 * 109.46883 * 240.00718 * 8 6 4 12 12 N 1.46499 * 109.47247 * 120.00077 * 2 1 3 13 13 C 1.34779 * 119.99872 * 275.00242 * 12 2 1 14 14 O 1.21281 * 120.00062 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99944 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.46894 * 60.00326 * 15 13 12 17 17 C 1.52989 * 109.47404 * 299.99988 * 15 13 12 18 18 C 1.53002 * 109.47566 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.46806 * 60.00046 * 18 17 15 20 20 C 1.53002 * 109.46911 * 300.00083 * 19 18 17 21 21 H 1.09004 * 109.46930 * 180.02562 * 20 19 18 22 22 N 1.46506 * 109.47035 * 300.00027 * 20 19 18 23 23 C 1.34767 * 120.00003 * 274.99925 * 22 20 19 24 24 O 1.21510 * 120.00518 * 0.02562 * 23 22 20 25 25 O 1.34644 * 119.99819 * 179.97438 * 23 22 20 26 26 C 1.45203 * 116.99638 * 180.02562 * 25 23 22 27 27 C 1.52991 * 109.47384 * 60.00239 * 26 25 23 28 28 C 1.53004 * 109.46843 * 180.02562 * 26 25 23 29 29 C 1.53005 * 109.47173 * 299.99857 * 26 25 23 30 30 C 1.52997 * 109.47084 * 179.97438 * 15 13 12 31 31 H 1.08999 * 109.47400 * 300.00423 * 1 2 3 32 32 H 1.09000 * 109.46947 * 60.00031 * 1 2 3 33 33 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 34 34 H 0.97009 * 119.99810 * 179.97438 * 7 6 4 35 35 H 0.97005 * 120.00448 * 95.00048 * 12 2 1 36 36 H 1.09001 * 109.47294 * 59.99437 * 17 15 13 37 37 H 1.09002 * 109.47371 * 300.00046 * 17 15 13 38 38 H 1.09002 * 109.47097 * 299.99918 * 18 17 15 39 39 H 1.09001 * 109.47142 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.46724 * 180.02562 * 19 18 17 41 41 H 1.08992 * 109.47399 * 60.00048 * 19 18 17 42 42 H 0.96996 * 119.99678 * 95.00711 * 22 20 19 43 43 H 1.09008 * 109.47035 * 59.99968 * 27 26 25 44 44 H 1.09005 * 109.47009 * 179.97438 * 27 26 25 45 45 H 1.08999 * 109.47583 * 299.99571 * 27 26 25 46 46 H 1.09003 * 109.46884 * 59.99592 * 28 26 25 47 47 H 1.08996 * 109.47598 * 179.97438 * 28 26 25 48 48 H 1.08998 * 109.46935 * 300.00233 * 28 26 25 49 49 H 1.08997 * 109.46609 * 60.00518 * 29 26 25 50 50 H 1.08996 * 109.46876 * 180.02562 * 29 26 25 51 51 H 1.09006 * 109.46979 * 300.00298 * 29 26 25 52 52 H 1.09002 * 109.47045 * 60.00033 * 30 15 13 53 53 H 1.09001 * 109.47375 * 299.99958 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1457 -2.2875 -3.6037 10 1 1.1663 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8164 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7288 3.5878 16 1 3.6480 -1.1213 3.3986 17 6 1.7044 -1.8823 3.9314 18 6 2.2142 -2.6041 5.1805 19 6 2.2662 -1.6213 6.3519 20 6 3.2107 -0.4677 6.0082 21 1 3.2481 0.2323 6.8429 22 7 4.5535 -0.9954 5.7534 23 6 5.3989 -1.2108 6.7806 24 8 5.0474 -0.9679 7.9181 25 8 6.6328 -1.6963 6.5464 26 6 7.4893 -1.9040 7.7004 27 6 6.8286 -2.9025 8.6528 28 6 8.8404 -2.4549 7.2401 29 6 7.7017 -0.5728 8.4241 30 6 2.7009 0.2545 4.7588 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.7093 1.1617 -3.4844 35 1 2.2490 -1.6318 1.1526 36 1 1.6676 -2.5827 3.0970 37 1 0.7052 -1.4899 4.1206 38 1 3.2132 -2.9967 4.9909 39 1 1.5410 -3.4257 5.4255 40 1 2.6298 -2.1354 7.2416 41 1 1.2672 -1.2287 6.5414 42 1 4.8340 -1.1896 4.8454 43 1 6.6773 -3.8510 8.1372 44 1 7.4718 -3.0588 9.5189 45 1 5.8662 -2.5097 8.9808 46 1 9.3109 -1.7432 6.5616 47 1 9.4836 -2.6105 8.1061 48 1 8.6894 -3.4031 6.7242 49 1 6.7393 -0.1800 8.7520 50 1 8.3450 -0.7287 9.2901 51 1 8.1724 0.1386 7.7455 52 1 1.7020 0.6474 4.9480 53 1 3.3741 1.0760 4.5137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247337498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:22 Heat of formation + Delta-G solvation = -167.879173 kcal Electronic energy + Delta-G solvation = -31055.547330 eV Core-core repulsion = 26925.305284 eV Total energy + Delta-G solvation = -4130.242046 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97117 -41.07813 -39.43811 -37.68763 -36.66643 -35.33418 -34.56103 -34.13159 -32.19198 -31.03728 -30.16744 -28.31869 -28.25852 -27.33152 -25.02641 -24.26670 -23.20120 -22.61748 -21.17601 -21.08560 -20.16757 -19.42715 -18.72247 -17.55921 -17.46727 -17.23919 -17.10381 -16.50241 -16.12921 -15.98552 -15.60146 -15.49407 -15.44439 -14.96394 -14.66684 -14.44226 -14.31449 -13.98449 -13.56294 -13.49570 -13.36833 -13.19058 -13.16251 -13.06646 -12.91650 -12.84680 -12.83742 -12.82067 -12.70234 -12.50135 -12.29327 -12.26485 -12.24886 -12.10824 -11.73792 -11.43981 -11.35884 -11.24029 -11.06629 -11.04811 -10.64699 -10.46727 -10.11958 -9.70559 -8.16974 -6.34211 1.22409 1.44485 1.45748 1.57490 1.82119 1.86038 2.35951 2.64169 3.13637 3.19350 3.58322 3.73931 3.79434 3.79595 3.84573 3.99081 4.03852 4.18514 4.29992 4.33693 4.45694 4.56014 4.62606 4.65473 4.66388 4.76789 4.77610 4.80625 4.86554 4.91493 4.91656 4.94039 5.04976 5.10888 5.11943 5.14184 5.17092 5.26521 5.30725 5.32265 5.33939 5.40568 5.46238 5.50075 5.63582 5.64135 5.71538 5.92774 6.12055 6.44104 6.74703 7.00913 7.33969 7.39078 7.60589 8.89383 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.002336 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.959425 B =11983.076539 C =12882.378731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.544 4.544 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.258 1.258 10 H -0.280 1.280 11 H -0.285 1.285 12 N -0.703 5.703 13 C 0.501 3.499 14 O -0.601 6.601 15 C -0.095 4.095 16 H 0.110 0.890 17 C -0.107 4.107 18 C -0.106 4.106 19 C -0.128 4.128 20 C 0.174 3.826 21 H 0.086 0.914 22 N -0.696 5.696 23 C 0.648 3.352 24 O -0.590 6.590 25 O -0.373 6.373 26 C 0.125 3.875 27 C -0.178 4.178 28 C -0.137 4.137 29 C -0.180 4.180 30 C -0.098 4.098 31 H 0.012 0.988 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.410 0.590 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.102 0.898 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.057 0.943 52 H 0.083 0.917 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.571 -11.301 21.637 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.582 4.582 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.211 1.211 12 N -0.352 5.352 13 C 0.288 3.712 14 O -0.483 6.483 15 C -0.116 4.116 16 H 0.128 0.872 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.167 4.167 20 C 0.071 3.929 21 H 0.104 0.896 22 N -0.357 5.357 23 C 0.401 3.599 24 O -0.481 6.481 25 O -0.287 6.287 26 C 0.089 3.911 27 C -0.235 4.235 28 C -0.194 4.194 29 C -0.237 4.237 30 C -0.137 4.137 31 H 0.031 0.969 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.247 0.753 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.120 0.880 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.109 0.891 51 H 0.076 0.924 52 H 0.102 0.898 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.186 -10.269 22.107 26.819 hybrid contribution 0.149 -0.108 -1.504 1.515 sum 11.335 -10.377 20.603 25.703 Atomic orbital electron populations 1.21881 0.98367 0.99436 0.99454 1.18313 0.91075 0.91823 0.82188 0.98646 1.21584 1.32361 1.13456 0.90782 0.90794 1.25808 0.94937 0.95601 1.02382 1.70066 1.37130 1.23997 1.24474 0.85304 0.78066 0.78548 0.78457 1.18216 1.20531 1.21129 1.46279 1.65042 1.14173 1.09695 1.21312 0.77343 0.86931 0.85590 1.90638 1.53167 1.18512 1.85988 1.21306 1.01845 0.97105 0.91332 0.87209 1.21546 0.98105 0.95435 0.99363 1.21439 1.02095 0.97756 0.93055 1.21943 0.99759 0.96336 0.98620 1.20923 0.79132 0.95464 0.97423 0.89559 1.44936 1.13731 1.68245 1.08738 1.18234 0.80425 0.76596 0.84615 1.90879 1.77961 1.57704 1.21544 1.86328 1.23785 1.77832 1.40784 1.22386 0.89381 0.96261 0.83117 1.22453 1.02680 0.98437 0.99906 1.21891 0.92382 1.01736 1.03418 1.22477 1.03523 0.96269 1.01448 1.21553 1.02926 0.96941 0.92241 0.96931 0.91740 0.94017 0.92632 0.76037 0.90274 0.91776 0.91297 0.90038 0.91673 0.89744 0.75264 0.91942 0.89256 0.91698 0.91549 0.87988 0.91196 0.91795 0.89144 0.92362 0.89834 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 13.75 2.56 44.24 0.11 13.86 16 3 H 0.00 -0.27 7.58 -2.38 -0.02 -0.28 16 4 C -0.54 -28.26 8.73 25.60 0.22 -28.04 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.21 16 8 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 9 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 12 N -0.70 -27.77 4.96 -446.09 -2.21 -29.99 16 13 C 0.50 18.70 7.12 87.66 0.62 19.32 16 14 O -0.60 -28.39 15.64 -3.03 -0.05 -28.44 16 15 C -0.09 -2.30 2.35 -11.54 -0.03 -2.32 16 16 H 0.11 2.20 6.50 -2.39 -0.02 2.19 16 17 C -0.11 -2.10 5.10 30.59 0.16 -1.94 16 18 C -0.11 -1.65 5.77 30.60 0.18 -1.47 16 19 C -0.13 -2.20 5.60 30.60 0.17 -2.03 16 20 C 0.17 3.46 2.78 45.01 0.13 3.59 16 21 H 0.09 1.90 7.58 -2.38 -0.02 1.88 16 22 N -0.70 -13.74 4.24 -570.04 -2.41 -16.15 16 23 C 0.65 14.93 8.02 129.79 1.04 15.97 16 24 O -0.59 -15.82 11.54 19.81 0.23 -15.60 16 25 O -0.37 -7.90 9.94 -55.54 -0.55 -8.45 16 26 C 0.12 2.09 1.13 -10.79 -0.01 2.08 16 27 C -0.18 -2.80 8.37 71.98 0.60 -2.20 16 28 C -0.14 -1.54 8.85 71.98 0.64 -0.90 16 29 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 30 C -0.10 -2.33 4.18 30.61 0.13 -2.20 16 31 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 33 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 35 H 0.40 13.22 7.96 -92.70 -0.74 12.48 16 36 H 0.08 1.47 7.56 -2.39 -0.02 1.45 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.03 7.60 -2.39 -0.02 1.01 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.41 7.15 6.98 -92.71 -0.65 6.50 16 43 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 50 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 52 H 0.08 2.13 8.10 -2.39 -0.02 2.11 16 53 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -69.64 409.69 2.47 -67.17 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.48 Total: 33.70 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.68 Total: 6.42 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -4.39 Total: -98.35 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.37 Total: -52.49 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -69.64 2.47 -67.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247337498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.705 kcal (2) G-P(sol) polarization free energy of solvation -69.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds