Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.89605 * 2 1 4 4 O 1.43235 * 109.83049 * 239.06155 * 2 1 3 5 5 C 1.43645 * 109.97529 * 242.19979 * 4 2 1 6 6 C 1.54944 * 105.22260 * 335.52671 * 5 4 2 7 7 C 1.54383 * 109.82711 * 120.93407 * 2 1 3 8 8 H 1.09002 * 110.85103 * 22.47208 * 7 2 1 9 9 C 1.50703 * 110.84793 * 259.06023 * 7 2 1 10 10 O 1.21287 * 119.99508 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00181 * 179.97438 * 9 7 2 12 12 C 1.46917 * 120.63014 * 359.71929 * 11 9 7 13 13 C 1.53632 * 108.54442 * 126.36669 * 12 11 9 14 14 C 1.53042 * 109.23476 * 54.85639 * 13 12 11 15 15 O 1.42909 * 109.44395 * 178.50033 * 14 13 12 16 16 C 1.42898 * 113.99713 * 270.05953 * 15 14 13 17 17 C 1.53005 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47084 * 179.97438 * 17 16 15 19 19 N 1.46508 * 109.46855 * 179.97438 * 18 17 16 20 20 C 1.36939 * 119.99966 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99734 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99819 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99841 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00136 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46867 * 90.00003 * 24 22 20 26 26 H 1.48498 * 109.47043 * 210.00059 * 24 22 20 27 27 H 1.48498 * 109.47235 * 329.99859 * 24 22 20 28 28 C 1.53036 * 109.54152 * 298.50719 * 14 13 12 29 29 C 1.46923 * 120.62680 * 180.02562 * 11 9 7 30 30 H 1.09006 * 109.47327 * 179.47905 * 1 2 3 31 31 H 1.08998 * 109.47323 * 299.48341 * 1 2 3 32 32 H 1.09003 * 109.47031 * 59.48248 * 1 2 3 33 33 H 1.09002 * 110.30923 * 94.49115 * 5 4 2 34 34 H 1.09000 * 110.31166 * 216.56243 * 5 4 2 35 35 H 1.08997 * 111.13230 * 154.41072 * 6 5 4 36 36 H 1.09003 * 111.12649 * 278.57419 * 6 5 4 37 37 H 1.08994 * 109.59105 * 246.19918 * 12 11 9 38 38 H 1.09007 * 109.59005 * 6.62959 * 12 11 9 39 39 H 1.08999 * 109.63154 * 294.86743 * 13 12 11 40 40 H 1.08995 * 109.43188 * 174.72388 * 13 12 11 41 41 H 1.08994 * 109.46416 * 58.53526 * 14 13 12 42 42 H 1.09000 * 109.47310 * 300.00425 * 16 15 14 43 43 H 1.09003 * 109.47412 * 60.00008 * 16 15 14 44 44 H 1.09003 * 109.46967 * 300.00683 * 17 16 15 45 45 H 1.09007 * 109.46484 * 60.00130 * 17 16 15 46 46 H 1.09002 * 109.47584 * 299.99799 * 18 17 16 47 47 H 1.08998 * 109.47097 * 60.00904 * 18 17 16 48 48 H 0.96998 * 119.99860 * 0.02562 * 19 18 17 49 49 H 0.96999 * 119.99852 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.50491 * 301.42081 * 28 14 13 51 51 H 1.08996 * 109.52478 * 181.33557 * 28 14 13 52 52 H 1.09000 * 109.59437 * 353.37306 * 29 11 9 53 53 H 1.09003 * 109.58966 * 113.80147 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6927 -1.1557 5 6 2.7747 -1.8445 -0.7545 6 6 3.2751 -1.5238 0.6764 7 6 2.0536 -0.7466 1.2457 8 1 1.2998 -1.4323 1.6325 9 6 2.4870 0.2268 2.3116 10 8 2.3947 1.4203 2.1165 11 7 2.9761 -0.2290 3.4818 12 6 3.0872 -1.6719 3.7355 13 6 4.5324 -1.9849 4.1522 14 6 4.9148 -1.1059 5.3452 15 8 6.2466 -1.4182 5.7587 16 6 6.3225 -2.4519 6.7424 17 6 7.7871 -2.7019 7.1078 18 6 7.8682 -3.8081 8.1615 19 7 9.2707 -4.0478 8.5109 20 6 9.5914 -5.0004 9.4408 21 1 8.8106 -5.5753 9.9164 22 6 10.9202 -5.2271 9.7722 23 7 11.2286 -6.1431 10.6658 24 14 12.2707 -4.2323 8.9501 25 1 12.5392 -3.0086 9.7474 26 1 13.5073 -5.0502 8.8671 27 1 11.8392 -3.8472 7.5824 28 6 4.8392 0.3679 4.9403 29 6 3.4021 0.7076 4.5306 30 1 -0.3634 -1.0277 -0.0093 31 1 -0.3634 0.5058 0.8946 32 1 -0.3633 0.5219 -0.8853 33 1 2.1400 -2.7307 -0.7436 34 1 3.6200 -1.9936 -1.4263 35 1 3.4601 -2.4371 1.2420 36 1 4.1641 -0.8937 0.6497 37 1 2.4037 -1.9559 4.5356 38 1 2.8397 -2.2226 2.8280 39 1 5.2058 -1.7813 3.3196 40 1 4.6091 -3.0349 4.4344 41 1 4.2258 -1.2921 6.1690 42 1 5.7723 -2.1473 7.6327 43 1 5.8870 -3.3674 6.3418 44 1 8.3368 -3.0066 6.2172 45 1 8.2229 -1.7864 7.5082 46 1 7.3186 -3.5029 9.0519 47 1 7.4324 -4.7236 7.7614 48 1 9.9719 -3.5312 8.0840 49 1 12.1571 -6.3018 10.8971 50 1 5.5097 0.5495 4.1004 51 1 5.1344 0.9929 5.7831 52 1 3.3625 1.7275 4.1480 53 1 2.7437 0.6133 5.3942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734090605.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -144.459795 kcal Electronic energy + Delta-G solvation = -29970.045906 eV Core-core repulsion = 25840.819401 eV Total energy + Delta-G solvation = -4129.226505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.89695 -40.23055 -39.33370 -37.78942 -36.94431 -34.44836 -33.98012 -32.92051 -32.46408 -31.88871 -31.60654 -27.86728 -27.04856 -25.65409 -24.51664 -23.89855 -23.23451 -22.73921 -22.54714 -21.52995 -20.01331 -19.61437 -18.87398 -17.77440 -17.41318 -17.15357 -16.86444 -16.60613 -16.41465 -16.16113 -15.73879 -15.57312 -15.48382 -15.33547 -14.99274 -14.78095 -14.74712 -14.48731 -14.06044 -13.92227 -13.72993 -13.63150 -13.48245 -13.10911 -13.01441 -12.93818 -12.80433 -12.51057 -12.49382 -12.36168 -12.29935 -12.07929 -11.96426 -11.92644 -11.88883 -11.82005 -11.74546 -11.48643 -10.99062 -10.93781 -10.50871 -10.39313 -9.81012 -9.32298 -8.04500 -5.38671 1.38116 1.40923 1.43426 1.48465 1.83040 2.47364 2.57593 2.74868 3.27029 3.27996 3.41753 3.63388 3.66335 3.71150 3.83460 3.96277 4.00379 4.07218 4.09131 4.14478 4.22814 4.26012 4.27015 4.34030 4.35982 4.41397 4.49339 4.57810 4.62125 4.67398 4.70933 4.72682 4.75932 4.79952 4.81662 4.81935 4.88747 4.96610 4.99069 5.11024 5.13584 5.21887 5.23180 5.30343 5.31482 5.45871 5.73648 6.01844 6.19410 6.26005 6.33224 7.00681 7.05933 7.82211 8.00557 9.16667 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.001687 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.956561 B =16592.433067 C =17068.291042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 H 0.069 0.931 4 O -0.401 6.401 5 C 0.046 3.954 6 C -0.142 4.142 7 C -0.136 4.136 8 H 0.141 0.859 9 C 0.525 3.475 10 O -0.580 6.580 11 N -0.607 5.607 12 C 0.102 3.898 13 C -0.154 4.154 14 C 0.085 3.915 15 O -0.401 6.401 16 C 0.075 3.925 17 C -0.118 4.118 18 C 0.157 3.843 19 N -0.762 5.762 20 C -0.240 4.240 21 H 0.059 0.941 22 C -0.063 4.063 23 N -0.982 5.982 24 Si 0.956 3.044 25 H -0.278 1.278 26 H -0.294 1.294 27 H -0.253 1.253 28 C -0.125 4.125 29 C 0.116 3.884 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.031 0.969 48 H 0.366 0.634 49 H 0.259 0.741 50 H 0.057 0.943 51 H 0.085 0.915 52 H 0.081 0.919 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.347 11.379 -22.390 35.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 H 0.087 0.913 4 O -0.321 6.321 5 C -0.030 4.030 6 C -0.179 4.179 7 C -0.157 4.157 8 H 0.159 0.841 9 C 0.314 3.686 10 O -0.460 6.460 11 N -0.339 5.339 12 C -0.019 4.019 13 C -0.193 4.193 14 C 0.028 3.972 15 O -0.321 6.321 16 C -0.001 4.001 17 C -0.156 4.156 18 C 0.031 3.969 19 N -0.408 5.408 20 C -0.370 4.370 21 H 0.077 0.923 22 C -0.255 4.255 23 N -0.632 5.632 24 Si 0.783 3.217 25 H -0.204 1.204 26 H -0.220 1.220 27 H -0.177 1.177 28 C -0.164 4.164 29 C -0.006 4.006 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.048 0.952 47 H 0.049 0.951 48 H 0.199 0.801 49 H 0.067 0.933 50 H 0.076 0.924 51 H 0.103 0.897 52 H 0.099 0.901 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.339 11.993 -22.615 36.019 hybrid contribution 1.231 0.292 0.341 1.310 sum -24.108 12.285 -22.275 35.047 Atomic orbital electron populations 1.22078 0.93313 1.03315 1.02590 1.22593 0.95443 0.96011 0.83196 0.91286 1.88441 1.71458 1.41570 1.30614 1.23587 0.95755 0.88851 0.94829 1.23450 0.96099 1.01537 0.96820 1.22987 1.00750 0.97655 0.94269 0.84138 1.20612 0.76371 0.88863 0.82795 1.90691 1.56790 1.18564 1.79948 1.48204 1.62260 1.08465 1.14948 1.22226 0.96519 0.78908 1.04282 1.22493 0.96721 1.01309 0.98763 1.22194 0.83959 0.94476 0.96597 1.87906 1.28135 1.56578 1.59440 1.22353 0.95893 0.90785 0.91116 1.21534 0.96931 0.98504 0.98623 1.20660 0.84630 0.96022 0.95613 1.42745 1.04083 1.44728 1.49243 1.19068 0.92729 1.11411 1.13840 0.92269 1.25530 0.99595 1.00321 1.00051 1.69883 1.18156 1.37636 1.37549 0.85396 0.78703 0.78175 0.79445 1.20404 1.22030 1.17718 1.21924 0.96604 0.95708 1.02135 1.21597 0.94324 0.94087 0.90594 0.90643 0.91313 0.92101 0.89679 0.88738 0.85883 0.91289 0.88677 0.86819 0.91537 0.88878 0.90388 0.92106 0.91660 0.91591 0.91714 0.95227 0.95074 0.80116 0.93255 0.92426 0.89665 0.90066 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.44 71.98 0.68 -1.22 16 2 C 0.09 1.34 3.61 31.06 0.11 1.46 16 3 H 0.07 1.50 6.78 -2.39 -0.02 1.49 16 4 O -0.40 -6.84 11.02 -148.98 -1.64 -8.48 16 5 C 0.05 0.43 7.77 72.65 0.56 1.00 16 6 C -0.14 -1.15 5.82 32.14 0.19 -0.96 16 7 C -0.14 -1.45 1.90 -10.19 -0.02 -1.46 16 8 H 0.14 0.70 7.50 -2.39 -0.02 0.68 16 9 C 0.52 8.57 7.06 87.66 0.62 9.19 16 10 O -0.58 -14.54 14.83 -3.05 -0.05 -14.58 16 11 N -0.61 -7.41 2.97 -817.96 -2.43 -9.84 16 12 C 0.10 0.64 6.06 86.51 0.52 1.16 16 13 C -0.15 -1.56 5.71 30.82 0.18 -1.39 16 14 C 0.09 1.21 2.57 30.62 0.08 1.29 16 15 O -0.40 -8.53 9.99 -148.98 -1.49 -10.02 16 16 C 0.08 1.58 5.75 71.98 0.41 1.99 16 17 C -0.12 -3.31 5.70 30.59 0.17 -3.14 16 18 C 0.16 5.66 6.26 86.38 0.54 6.20 16 19 N -0.76 -35.65 5.41 -343.45 -1.86 -37.51 16 20 C -0.24 -13.73 10.47 84.03 0.88 -12.85 16 21 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 22 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 23 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 24 Si 0.96 45.50 27.74 68.60 1.90 47.40 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 27 H -0.25 -10.88 6.52 99.48 0.65 -10.24 16 28 C -0.13 -1.84 5.73 30.69 0.18 -1.67 16 29 C 0.12 1.54 6.43 86.38 0.56 2.10 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 0.29 6.44 -2.39 -0.02 0.27 16 36 H 0.07 0.82 8.04 -2.39 -0.02 0.80 16 37 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.11 0.24 4.06 -2.38 -0.01 0.23 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.79 7.84 -2.39 -0.02 0.77 16 41 H 0.08 0.89 7.79 -2.39 -0.02 0.87 16 42 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 43 H 0.07 1.17 7.84 -2.39 -0.02 1.15 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.37 16.39 5.53 -92.71 -0.51 15.88 16 49 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.08 1.40 7.01 -2.39 -0.02 1.38 16 53 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -77.33 409.68 1.19 -76.14 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.31 Total: 21.00 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 6.13 Total: -1.58 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -3.98 Total: -109.88 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -3.17 Total: -33.08 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.40 kcal Total: -77.33 1.19 -76.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734090605.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.323 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds