Wall clock time and date at job start Sat Apr 11 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.98698 * 2 1 4 4 O 1.43741 * 109.87759 * 121.08366 * 2 1 3 5 5 C 1.44384 * 106.97228 * 145.93499 * 4 2 1 6 6 C 1.54996 * 103.49193 * 319.94343 * 5 4 2 7 7 C 1.54101 * 109.87723 * 238.91597 * 2 1 3 8 8 H 1.09001 * 110.60046 * 119.81508 * 7 2 1 9 9 C 1.50699 * 110.48931 * 357.22355 * 7 2 1 10 10 O 1.21280 * 120.00003 * 269.20041 * 9 7 2 11 11 N 1.34775 * 119.99933 * 89.20021 * 9 7 2 12 12 C 1.46928 * 120.63264 * 4.18752 * 11 9 7 13 13 C 1.53621 * 108.54364 * 126.37159 * 12 11 9 14 14 C 1.53039 * 109.24479 * 54.85624 * 13 12 11 15 15 O 1.42899 * 109.45135 * 178.49816 * 14 13 12 16 16 C 1.42897 * 113.99880 * 270.06244 * 15 14 13 17 17 C 1.53003 * 109.46934 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46976 * 179.97438 * 17 16 15 19 19 N 1.46498 * 109.46945 * 180.02562 * 18 17 16 20 20 C 1.36943 * 119.99688 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00285 * 359.97438 * 20 19 18 22 22 C 1.38820 * 119.99477 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00183 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99617 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46911 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.46776 * 119.99800 * 24 22 20 27 27 H 1.48500 * 109.47101 * 240.00091 * 24 22 20 28 28 C 1.53046 * 109.53764 * 298.51348 * 14 13 12 29 29 C 1.46927 * 120.63134 * 184.47041 * 11 9 7 30 30 H 1.08995 * 109.47218 * 304.56069 * 1 2 3 31 31 H 1.09000 * 109.47227 * 64.56453 * 1 2 3 32 32 H 1.09004 * 109.46626 * 184.56197 * 1 2 3 33 33 H 1.09003 * 110.61314 * 78.44545 * 5 4 2 34 34 H 1.09001 * 110.62147 * 201.27776 * 5 4 2 35 35 H 1.09001 * 110.90143 * 155.21985 * 6 5 4 36 36 H 1.09003 * 110.90454 * 278.78575 * 6 5 4 37 37 H 1.09001 * 109.58701 * 246.20259 * 12 11 9 38 38 H 1.08994 * 109.58566 * 6.62675 * 12 11 9 39 39 H 1.08998 * 109.63200 * 294.86182 * 13 12 11 40 40 H 1.09004 * 109.43122 * 174.72390 * 13 12 11 41 41 H 1.08999 * 109.46271 * 58.53097 * 14 13 12 42 42 H 1.08999 * 109.47359 * 299.99501 * 16 15 14 43 43 H 1.09001 * 109.47158 * 59.99761 * 16 15 14 44 44 H 1.08993 * 109.47620 * 299.99603 * 17 16 15 45 45 H 1.09001 * 109.47230 * 60.00005 * 17 16 15 46 46 H 1.09002 * 109.46927 * 299.99708 * 18 17 16 47 47 H 1.09001 * 109.47054 * 60.00000 * 18 17 16 48 48 H 0.96998 * 120.00079 * 359.97438 * 19 18 17 49 49 H 0.96999 * 119.99381 * 180.02562 * 23 22 20 50 50 H 1.09008 * 109.49445 * 301.41077 * 28 14 13 51 51 H 1.08998 * 109.52286 * 181.33378 * 28 14 13 52 52 H 1.09003 * 109.58604 * 353.36906 * 29 11 9 53 53 H 1.09000 * 109.59207 * 113.79709 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2379 -1.3642 0.7646 6 6 2.9195 -1.8914 -0.6577 7 6 2.0540 -0.7482 -1.2411 8 1 2.6615 -0.0872 -1.8593 9 6 0.9074 -1.3104 -2.0412 10 8 0.5033 -2.4316 -1.8165 11 7 0.3309 -0.5672 -3.0065 12 6 0.8669 0.7563 -3.3529 13 6 1.1313 0.7957 -4.8656 14 6 -0.1516 0.4226 -5.6119 15 8 0.0798 0.4919 -7.0203 16 6 -0.1900 1.7737 -7.5913 17 6 0.0913 1.7318 -9.0946 18 6 -0.1982 3.1041 -9.7061 19 7 0.0706 3.0637 -11.1457 20 6 -0.1193 4.1845 -11.9093 21 1 -0.4676 5.0980 -11.4504 22 6 0.1350 4.1461 -13.2735 23 7 0.5580 3.0324 -13.8330 24 14 -0.1247 5.6748 -14.3153 25 1 -0.6025 6.7858 -13.4535 26 1 1.1581 6.0610 -14.9558 27 1 -1.1368 5.3926 -15.3647 28 6 -0.5687 -1.0004 -5.2331 29 6 -0.8491 -1.0624 -3.7283 30 1 -0.3633 0.5829 0.8463 31 1 -0.3634 0.4414 -0.9280 32 1 -0.3633 -1.0245 0.0817 33 1 4.0685 -0.6589 0.7356 34 1 3.4600 -2.1891 1.4417 35 1 3.8332 -2.0223 -1.2375 36 1 2.3545 -2.8223 -0.6100 37 1 0.1421 1.5253 -3.0857 38 1 1.7984 0.9259 -2.8131 39 1 1.9188 0.0857 -5.1183 40 1 1.4406 1.8005 -5.1536 41 1 -0.9454 1.1182 -5.3397 42 1 -1.2354 2.0332 -7.4241 43 1 0.4495 2.5220 -7.1230 44 1 1.1368 1.4726 -9.2616 45 1 -0.5478 0.9834 -9.5632 46 1 -1.2438 3.3628 -9.5393 47 1 0.4407 3.8527 -9.2376 48 1 0.3831 2.2432 -11.5579 49 1 0.7359 3.0058 -14.7861 50 1 0.2348 -1.6935 -5.4824 51 1 -1.4692 -1.2745 -5.7826 52 1 -1.0500 -2.0932 -3.4364 53 1 -1.7110 -0.4387 -3.4912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734090607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:47 Heat of formation + Delta-G solvation = -143.323770 kcal Electronic energy + Delta-G solvation = -29988.225021 eV Core-core repulsion = 25859.047777 eV Total energy + Delta-G solvation = -4129.177244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.99884 -40.20825 -39.24037 -37.70444 -36.80719 -34.42905 -33.91478 -32.75248 -32.36506 -32.02592 -31.21667 -27.65468 -26.97234 -25.73723 -24.56484 -24.18521 -23.17084 -23.06742 -22.44203 -21.44662 -19.67285 -19.13463 -18.62932 -17.75254 -17.51847 -17.19395 -16.84044 -16.65839 -16.59563 -16.15615 -15.90037 -15.70803 -15.40868 -15.25761 -15.10861 -14.73914 -14.65771 -14.15537 -14.04142 -13.64284 -13.54240 -13.36692 -13.31251 -13.25874 -12.95008 -12.88334 -12.86695 -12.48593 -12.40888 -12.27986 -12.19630 -12.07973 -12.02346 -11.99164 -11.90330 -11.75118 -11.68905 -11.47833 -11.00725 -10.95705 -10.57977 -10.37658 -9.77185 -9.02952 -7.96531 -5.26683 1.47848 1.48119 1.49353 1.59575 1.87496 2.50550 2.66201 2.84021 3.26971 3.37497 3.47036 3.65124 3.75727 3.81569 3.95371 3.98852 4.01155 4.09656 4.11034 4.17568 4.25794 4.28490 4.29451 4.31421 4.37560 4.46407 4.49581 4.56881 4.60299 4.67977 4.72250 4.76780 4.77505 4.81223 4.81909 4.84032 4.89249 4.94032 4.97730 5.10785 5.13671 5.16392 5.23924 5.33291 5.33878 5.47730 5.48928 5.89800 6.25172 6.29983 6.35166 7.07394 7.31353 8.06881 8.29497 9.27534 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029117 B = 0.001553 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.409552 B =18023.510859 C =18262.672508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.090 3.910 3 H 0.107 0.893 4 O -0.397 6.397 5 C 0.047 3.953 6 C -0.146 4.146 7 C -0.146 4.146 8 H 0.137 0.863 9 C 0.530 3.470 10 O -0.580 6.580 11 N -0.611 5.611 12 C 0.105 3.895 13 C -0.154 4.154 14 C 0.085 3.915 15 O -0.403 6.403 16 C 0.078 3.922 17 C -0.114 4.114 18 C 0.155 3.845 19 N -0.751 5.751 20 C -0.248 4.248 21 H 0.080 0.920 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.978 3.022 25 H -0.263 1.263 26 H -0.292 1.292 27 H -0.293 1.293 28 C -0.126 4.126 29 C 0.118 3.882 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.029 0.971 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.055 0.945 51 H 0.083 0.917 52 H 0.080 0.920 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -5.294 33.394 33.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.125 0.875 4 O -0.317 6.317 5 C -0.029 4.029 6 C -0.184 4.184 7 C -0.167 4.167 8 H 0.154 0.846 9 C 0.320 3.680 10 O -0.460 6.460 11 N -0.343 5.343 12 C -0.016 4.016 13 C -0.193 4.193 14 C 0.028 3.972 15 O -0.323 6.323 16 C 0.001 3.999 17 C -0.153 4.153 18 C 0.029 3.971 19 N -0.393 5.393 20 C -0.380 4.380 21 H 0.098 0.902 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.807 3.193 25 H -0.187 1.187 26 H -0.219 1.219 27 H -0.220 1.220 28 C -0.164 4.164 29 C -0.005 4.005 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.047 0.953 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.102 0.898 52 H 0.098 0.902 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.665 -5.845 33.602 34.210 hybrid contribution -0.007 0.085 -1.451 1.453 sum 2.658 -5.760 32.151 32.771 Atomic orbital electron populations 1.22115 0.94177 1.02026 1.03649 1.22738 0.95069 0.96285 0.82684 0.87531 1.88891 1.41040 1.68201 1.33582 1.23719 0.87340 0.97145 0.94664 1.23169 1.00253 0.97902 0.97066 1.22995 0.95904 0.99919 0.97918 0.84576 1.20559 0.83578 0.84479 0.79434 1.90677 1.65414 1.20950 1.68943 1.48280 1.30388 1.19383 1.36252 1.22152 1.01707 0.83192 0.94570 1.22486 0.98172 1.03496 0.95106 1.22209 0.97282 0.97355 0.80392 1.87919 1.89086 1.32806 1.22518 1.22347 1.00306 0.85047 0.92157 1.21488 1.01768 0.97142 0.94855 1.20674 0.97681 0.95135 0.83596 1.42625 1.80781 1.11887 1.04054 1.19737 1.36189 0.91585 0.90494 0.90176 1.25664 1.02768 1.00422 0.98236 1.69842 1.53722 1.27811 1.10848 0.85003 0.76832 0.78984 0.78498 1.18702 1.21950 1.22035 1.21917 1.02564 0.96249 0.95673 1.21559 0.87743 1.01458 0.89716 0.90834 0.89718 0.94161 0.89499 0.88192 0.87874 0.91390 0.88335 0.86953 0.91963 0.88964 0.90187 0.92002 0.91599 0.92361 0.92563 0.95571 0.95338 0.79592 0.93963 0.92623 0.89809 0.90192 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.41 71.98 0.61 -1.54 16 2 C 0.09 1.04 4.05 30.97 0.13 1.16 16 3 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 4 O -0.40 -6.50 11.19 -148.98 -1.67 -8.17 16 5 C 0.05 0.50 7.72 72.67 0.56 1.07 16 6 C -0.15 -1.82 6.64 31.89 0.21 -1.61 16 7 C -0.15 -1.66 2.71 -10.55 -0.03 -1.68 16 8 H 0.14 0.69 6.04 -2.39 -0.01 0.68 16 9 C 0.53 9.18 4.69 87.66 0.41 9.59 16 10 O -0.58 -15.29 14.63 -3.03 -0.04 -15.33 16 11 N -0.61 -8.05 2.25 -818.08 -1.84 -9.89 16 12 C 0.11 0.77 5.88 86.51 0.51 1.28 16 13 C -0.15 -1.86 5.71 30.82 0.18 -1.68 16 14 C 0.09 1.37 2.57 30.62 0.08 1.45 16 15 O -0.40 -9.75 9.99 -148.98 -1.49 -11.24 16 16 C 0.08 1.85 5.75 71.98 0.41 2.26 16 17 C -0.11 -3.71 5.70 30.60 0.17 -3.54 16 18 C 0.16 6.07 6.26 86.38 0.54 6.61 16 19 N -0.75 -38.88 5.60 -343.44 -1.92 -40.81 16 20 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 21 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 22 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 23 N -0.97 -60.23 13.06 21.65 0.28 -59.94 16 24 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 28 C -0.13 -2.08 5.73 30.67 0.18 -1.91 16 29 C 0.12 1.70 6.44 86.36 0.56 2.26 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.87 6.39 -2.39 -0.02 0.86 16 32 H 0.04 0.79 7.33 -2.38 -0.02 0.77 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.29 6.84 -2.39 -0.02 1.27 16 37 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.11 0.33 5.36 -2.39 -0.01 0.32 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.96 7.84 -2.38 -0.02 0.94 16 41 H 0.08 1.02 7.79 -2.39 -0.02 1.00 16 42 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 43 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.37 20.71 7.67 -92.71 -0.71 19.99 16 49 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.08 1.49 7.00 -2.39 -0.02 1.47 16 53 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.26 409.65 1.34 -74.92 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.18 Total: 25.99 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.82 Total: -3.52 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.48 Total: -110.64 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -3.20 Total: -34.74 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -76.26 1.34 -74.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734090607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.401 kcal (2) G-P(sol) polarization free energy of solvation -76.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds