Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46837 * 2 1 4 4 C 1.53009 * 109.46815 * 240.00395 * 2 1 3 5 5 C 1.52998 * 109.46878 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.47048 * 59.99791 * 5 4 2 7 7 C 1.52997 * 109.47527 * 300.00308 * 6 5 4 8 8 C 1.52998 * 109.47286 * 120.00421 * 2 1 3 9 9 H 1.08997 * 109.47099 * 299.99912 * 8 2 1 10 10 O 1.42901 * 109.47019 * 60.00149 * 8 2 1 11 11 C 1.42902 * 113.99576 * 210.00208 * 10 8 2 12 12 C 1.50707 * 109.47162 * 179.97438 * 11 10 8 13 13 O 1.21283 * 119.99581 * 0.02562 * 12 11 10 14 14 N 1.34766 * 120.00134 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00154 * 175.07657 * 14 12 11 16 16 C 1.52997 * 112.94264 * 303.27115 * 15 14 12 17 17 C 1.52990 * 109.47324 * 304.10111 * 16 15 14 18 18 O 1.42895 * 109.47521 * 175.18928 * 17 16 15 19 19 C 1.53944 * 113.74475 * 171.67679 * 15 14 12 20 20 N 1.47818 * 86.03739 * 222.08700 * 19 15 14 21 21 C 1.36938 * 134.45322 * 204.64581 * 20 19 15 22 22 H 1.07999 * 119.99542 * 179.86590 * 21 20 19 23 23 C 1.38803 * 120.00220 * 359.86380 * 21 20 19 24 24 N 1.31625 * 120.00188 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99981 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47319 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47204 * 120.00040 * 25 23 21 28 28 H 1.48499 * 109.47122 * 240.00151 * 25 23 21 29 29 C 1.47584 * 91.04757 * 24.55072 * 20 19 15 30 30 H 1.08997 * 109.46979 * 299.99593 * 1 2 3 31 31 H 1.08992 * 109.47259 * 59.99984 * 1 2 3 32 32 H 1.09003 * 109.46617 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47233 * 60.00016 * 4 2 1 34 34 H 1.08994 * 109.47104 * 299.99746 * 4 2 1 35 35 H 1.09000 * 109.47535 * 300.00645 * 5 4 2 36 36 H 1.08997 * 109.47042 * 180.02562 * 5 4 2 37 37 H 1.08995 * 109.47328 * 179.97438 * 6 5 4 38 38 H 1.09008 * 109.46503 * 60.00212 * 6 5 4 39 39 H 1.09002 * 109.46690 * 300.00026 * 7 6 5 40 40 H 1.08992 * 109.47591 * 179.97438 * 7 6 5 41 41 H 1.08998 * 109.47042 * 299.99626 * 11 10 8 42 42 H 1.08996 * 109.47646 * 59.99925 * 11 10 8 43 43 H 0.96998 * 120.00108 * 355.07880 * 14 12 11 44 44 H 1.09003 * 109.47331 * 64.10577 * 16 15 14 45 45 H 1.09010 * 109.47065 * 184.09925 * 16 15 14 46 46 H 1.09005 * 109.47449 * 295.18939 * 17 16 15 47 47 H 1.09009 * 109.47193 * 55.19069 * 17 16 15 48 48 H 0.96699 * 114.00631 * 179.97438 * 18 17 16 49 49 H 1.09000 * 113.76494 * 336.34989 * 19 15 14 50 50 H 1.08990 * 113.77008 * 107.74785 * 19 15 14 51 51 H 0.97001 * 120.00129 * 179.97438 * 24 23 21 52 52 H 1.09007 * 113.76256 * 221.15116 * 29 20 19 53 53 H 1.08997 * 113.76956 * 89.76273 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7207 -1.2497 6 6 4.0806 -1.4416 -0.0004 7 6 3.5706 -0.7205 1.2488 8 6 2.0401 -0.7213 1.2492 9 1 1.6768 -0.2076 2.1392 10 8 1.5638 -2.0686 1.2490 11 6 1.3701 -2.6166 2.5545 12 6 0.8687 -4.0329 2.4355 13 8 0.6950 -4.5246 1.3405 14 7 0.6145 -4.7532 3.5457 15 6 0.0258 -6.0900 3.4328 16 6 -1.3034 -6.0942 2.6751 17 6 -2.2768 -5.1241 3.3474 18 8 -3.4774 -5.0434 2.5769 19 6 -0.0168 -6.8631 4.7633 20 7 0.4123 -8.0383 3.9761 21 6 0.2939 -9.3934 4.1338 22 1 0.7050 -10.0613 3.3913 23 6 -0.3545 -9.9085 5.2478 24 7 -0.8550 -9.0944 6.1529 25 14 -0.5153 -11.7570 5.4632 26 1 0.1281 -12.4469 4.3163 27 1 0.1513 -12.1683 6.7248 28 1 -1.9528 -12.1255 5.5199 29 6 1.0170 -7.1651 2.9515 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 -0.2073 -2.1393 34 1 1.6767 -1.7488 -1.2494 35 1 3.9331 0.3071 -1.2498 36 1 3.9333 -1.2340 -2.1400 37 1 5.1705 -1.4417 -0.0009 38 1 3.7175 -2.4695 -0.0004 39 1 3.9335 0.3073 1.2487 40 1 3.9339 -1.2344 2.1388 41 1 2.3164 -2.6101 3.0954 42 1 0.6382 -2.0168 3.0955 43 1 0.8213 -4.3867 4.4196 44 1 -1.1349 -5.7836 1.6440 45 1 -1.7255 -7.0992 2.6874 46 1 -2.5119 -5.4817 4.3500 47 1 -1.8193 -4.1367 3.4118 48 1 -4.1418 -4.4450 2.9451 49 1 0.7229 -6.5274 5.4902 50 1 -1.0174 -6.9569 5.1851 51 1 -1.3085 -9.4544 6.9312 52 1 0.8401 -7.4997 1.9292 53 1 2.0610 -6.9184 3.1450 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755336981.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -119.389420 kcal Electronic energy + Delta-G solvation = -31496.245463 eV Core-core repulsion = 27368.106091 eV Total energy + Delta-G solvation = -4128.139372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.50929 -40.48393 -39.22547 -37.71878 -36.83191 -35.24601 -33.81770 -33.44662 -32.00962 -31.05819 -29.32962 -28.43427 -26.94167 -26.85302 -24.98497 -23.43957 -23.31001 -22.28216 -21.67133 -20.53272 -20.15501 -18.79544 -18.50454 -18.17606 -17.38687 -17.02058 -16.95456 -16.63387 -16.22071 -15.97241 -15.83179 -15.56478 -15.32727 -15.04651 -14.90649 -14.52782 -14.42899 -14.02299 -13.89645 -13.65461 -13.46494 -13.35050 -13.20485 -12.99012 -12.88117 -12.81306 -12.60703 -12.48348 -12.40117 -12.37542 -12.25897 -12.01216 -11.75716 -11.71604 -11.45756 -11.37567 -11.31956 -10.99388 -10.88702 -10.80495 -10.50910 -10.30512 -10.01608 -8.97050 -7.94444 -5.27123 1.45192 1.46277 1.56235 1.69872 1.87075 2.46138 3.05994 3.14154 3.25802 3.39804 3.62822 3.75116 3.85101 3.90822 3.96214 4.11427 4.24170 4.27346 4.28017 4.30874 4.33628 4.37890 4.46987 4.47143 4.59599 4.64580 4.67684 4.70464 4.70846 4.81200 4.83283 4.95149 5.00293 5.02200 5.09813 5.12665 5.13311 5.17976 5.21806 5.25853 5.33574 5.39097 5.45278 5.46915 5.50237 5.65757 5.71374 5.88673 6.29423 6.70561 6.89821 6.90459 7.38031 7.55428 8.48762 9.22625 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.002566 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.768218 B =10907.576240 C =11701.839316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.102 0.898 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.138 4.138 8 C 0.086 3.914 9 H 0.083 0.917 10 O -0.375 6.375 11 C 0.048 3.952 12 C 0.509 3.491 13 O -0.561 6.561 14 N -0.704 5.704 15 C 0.159 3.841 16 C -0.091 4.091 17 C 0.094 3.906 18 O -0.593 6.593 19 C 0.174 3.826 20 N -0.632 5.632 21 C -0.236 4.236 22 H 0.077 0.923 23 C -0.058 4.058 24 N -0.946 5.946 25 Si 0.977 3.023 26 H -0.271 1.271 27 H -0.288 1.288 28 H -0.290 1.290 29 C 0.120 3.880 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.417 0.583 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.396 0.604 49 H 0.039 0.961 50 H 0.059 0.941 51 H 0.252 0.748 52 H 0.035 0.965 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 25.737 -5.753 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.120 0.880 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.176 4.176 8 C 0.029 3.971 9 H 0.101 0.899 10 O -0.293 6.293 11 C -0.031 4.031 12 C 0.296 3.704 13 O -0.439 6.439 14 N -0.359 5.359 15 C 0.071 3.929 16 C -0.130 4.130 17 C 0.017 3.983 18 O -0.401 6.401 19 C 0.048 3.952 20 N -0.359 5.359 21 C -0.364 4.364 22 H 0.095 0.905 23 C -0.251 4.251 24 N -0.594 5.594 25 Si 0.805 3.195 26 H -0.196 1.196 27 H -0.215 1.215 28 H -0.217 1.217 29 C -0.006 4.006 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.254 0.746 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.246 0.754 49 H 0.057 0.943 50 H 0.077 0.923 51 H 0.061 0.939 52 H 0.053 0.947 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.616 24.581 -6.946 26.154 hybrid contribution -0.193 -1.041 1.129 1.548 sum 5.424 23.540 -5.816 24.847 Atomic orbital electron populations 1.21757 0.95123 1.01210 1.02096 1.21263 0.95838 0.99335 0.93680 0.88026 1.21496 0.95845 1.00042 0.97618 1.21503 0.95218 1.01041 0.97470 1.21412 0.99913 0.99063 0.95115 1.22046 0.95260 1.02092 0.98168 1.22401 0.93635 0.81969 0.99103 0.89927 1.88069 1.86770 1.29019 1.25484 1.22316 1.02874 0.90514 0.87427 1.20993 0.77053 0.88392 0.83963 1.90708 1.52248 1.72614 1.28289 1.45833 1.63905 1.16504 1.09646 1.22167 0.92237 0.80546 0.97955 1.21190 0.92786 0.99446 0.99571 1.21933 0.84774 0.98217 0.93397 1.86444 1.28756 1.70562 1.54357 1.22468 0.99096 0.82983 0.90627 1.45979 1.65081 1.00840 1.23971 1.19328 1.30899 0.81048 1.05176 0.90469 1.25530 1.00793 1.02150 0.96666 1.69936 1.42868 1.34268 1.12343 0.85036 0.77112 0.79778 0.77531 1.19581 1.21455 1.21714 1.22958 0.95600 0.89106 0.92962 0.91747 0.92232 0.94420 0.91707 0.94182 0.90499 0.92725 0.91687 0.94190 0.89040 0.91542 0.88080 0.87495 0.74582 0.91785 0.93175 0.93398 0.92143 0.75407 0.94337 0.92288 0.93940 0.94691 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.05 71.98 0.65 -1.69 16 2 C -0.08 -1.23 2.55 -10.79 -0.03 -1.26 16 3 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.11 -2.06 5.06 30.60 0.15 -1.90 16 5 C -0.11 -1.83 5.92 30.60 0.18 -1.65 16 6 C -0.12 -2.06 5.78 30.60 0.18 -1.88 16 7 C -0.14 -1.87 5.63 30.61 0.17 -1.69 16 8 C 0.09 1.31 2.35 30.61 0.07 1.38 16 9 H 0.08 0.88 7.79 -2.39 -0.02 0.86 16 10 O -0.37 -8.60 7.50 -129.94 -0.97 -9.57 16 11 C 0.05 0.91 6.23 71.24 0.44 1.36 16 12 C 0.51 14.78 7.47 87.66 0.65 15.44 16 13 O -0.56 -22.32 14.68 16.00 0.23 -22.09 16 14 N -0.70 -19.59 4.52 -427.55 -1.93 -21.52 16 15 C 0.16 6.04 0.68 5.36 0.00 6.05 16 16 C -0.09 -3.68 4.67 30.59 0.14 -3.54 16 17 C 0.09 3.05 6.86 71.98 0.49 3.55 16 18 O -0.59 -18.81 13.66 -148.98 -2.03 -20.84 16 19 C 0.17 7.79 6.69 86.44 0.58 8.37 16 20 N -0.63 -32.97 3.55 -715.44 -2.54 -35.51 16 21 C -0.24 -13.54 10.70 84.03 0.90 -12.64 16 22 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 23 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 24 N -0.95 -55.24 11.39 21.65 0.25 -54.99 16 25 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 28 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 29 C 0.12 5.39 8.04 86.49 0.70 6.08 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.84 7.68 -2.39 -0.02 0.82 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.02 7.68 -2.39 -0.02 1.01 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.04 0.97 7.68 -2.38 -0.02 0.95 16 39 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 41 H 0.10 1.39 7.87 -2.39 -0.02 1.37 16 42 H 0.11 1.35 8.08 -2.39 -0.02 1.33 16 43 H 0.42 8.44 8.67 -92.71 -0.80 7.64 16 44 H 0.06 2.80 6.54 -2.39 -0.02 2.78 16 45 H 0.05 2.38 8.02 -2.38 -0.02 2.36 16 46 H 0.05 1.56 7.61 -2.38 -0.02 1.54 16 47 H 0.06 1.64 7.43 -2.38 -0.02 1.63 16 48 H 0.40 7.83 9.12 -74.06 -0.68 7.16 16 49 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 50 H 0.06 2.93 6.59 -2.39 -0.02 2.91 16 51 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 52 H 0.03 1.66 8.10 -2.38 -0.02 1.64 16 53 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -77.20 413.65 0.20 -77.00 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.58 Total: 26.37 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.76 Total: 13.15 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -4.23 Total: -112.03 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -2.77 Total: -52.51 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.20 0.20 -77.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336981.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.389 kcal (2) G-P(sol) polarization free energy of solvation -77.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds