Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 N 1.46507 * 109.47067 * 119.99647 * 2 1 3 5 5 C 1.34774 * 119.99732 * 274.99922 * 4 2 1 6 6 O 1.21284 * 120.00490 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99937 * 179.97438 * 5 4 2 8 8 O 1.42898 * 109.47126 * 179.97438 * 7 5 4 9 9 C 1.42899 * 113.99858 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47309 * 180.02562 * 9 8 7 11 11 H 1.09005 * 109.86891 * 53.99300 * 10 9 8 12 12 C 1.54103 * 109.88233 * 175.00208 * 10 9 8 13 13 C 1.54806 * 104.18633 * 121.45538 * 12 10 9 14 14 C 1.54988 * 102.09389 * 20.88047 * 13 12 10 15 15 O 1.43750 * 109.88101 * 292.83432 * 10 9 8 16 16 C 1.52998 * 109.47124 * 239.99379 * 2 1 3 17 17 C 1.53043 * 109.45929 * 180.02562 * 16 2 1 18 18 C 1.53187 * 109.31161 * 178.61743 * 17 16 2 19 19 N 1.46930 * 108.77961 * 54.63356 * 18 17 16 20 20 C 1.36936 * 120.63170 * 126.36859 * 19 18 17 21 21 H 1.07993 * 120.00181 * 207.69874 * 20 19 18 22 22 C 1.38817 * 119.99850 * 27.69468 * 20 19 18 23 23 N 1.31615 * 119.99840 * 17.36601 * 22 20 19 24 24 Si 1.86797 * 119.99943 * 197.36056 * 22 20 19 25 25 H 1.48504 * 109.47259 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47094 * 120.00507 * 24 22 20 27 27 H 1.48502 * 109.47246 * 240.00621 * 24 22 20 28 28 C 1.46922 * 118.73622 * 306.39275 * 19 18 17 29 29 C 1.53032 * 109.45965 * 60.00455 * 16 2 1 30 30 H 1.09005 * 109.46973 * 300.00335 * 1 2 3 31 31 H 1.08997 * 109.46562 * 60.00418 * 1 2 3 32 32 H 1.08992 * 109.47029 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99898 * 94.99835 * 4 2 1 34 34 H 1.08997 * 109.47020 * 300.00041 * 7 5 4 35 35 H 1.09001 * 109.46730 * 59.99984 * 7 5 4 36 36 H 1.09001 * 109.47307 * 300.00361 * 9 8 7 37 37 H 1.09001 * 109.47234 * 60.00180 * 9 8 7 38 38 H 1.09000 * 110.48839 * 240.13300 * 12 10 9 39 39 H 1.08994 * 110.48572 * 2.77865 * 12 10 9 40 40 H 1.09002 * 110.90751 * 139.08155 * 13 12 10 41 41 H 1.09002 * 110.90273 * 262.64349 * 13 12 10 42 42 H 1.09003 * 110.62129 * 81.48081 * 14 13 12 43 43 H 1.09006 * 110.61949 * 204.46969 * 14 13 12 44 44 H 1.08995 * 109.46142 * 300.02543 * 16 2 1 45 45 H 1.08999 * 109.49705 * 298.56578 * 17 16 2 46 46 H 1.08999 * 109.49825 * 58.66187 * 17 16 2 47 47 H 1.09000 * 109.58540 * 294.84468 * 18 17 16 48 48 H 1.09002 * 109.59004 * 174.42517 * 18 17 16 49 49 H 0.97008 * 119.99909 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.58951 * 293.82220 * 28 19 18 51 51 H 1.08999 * 109.58697 * 173.39357 * 28 19 18 52 52 H 1.09006 * 109.49797 * 301.33853 * 29 16 2 53 53 H 1.08996 * 109.50277 * 61.43081 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 2.1471 -0.0181 2.3571 6 8 1.8591 1.1588 2.4115 7 6 2.6489 -0.7286 3.5879 8 8 2.6976 0.1899 4.6815 9 6 3.1622 -0.3861 5.9040 10 6 3.1724 0.6819 6.9994 11 1 2.1894 1.1472 7.0724 12 6 3.5517 0.0438 8.3499 13 6 4.8175 0.8172 8.7928 14 6 4.7062 2.1230 7.9654 15 8 4.1666 1.6769 6.7028 16 6 2.0400 -0.7214 -1.2491 17 6 3.5704 -0.7218 -1.2485 18 6 4.0773 -1.4747 -2.4826 19 7 3.4745 -0.8772 -3.6819 20 6 4.2603 -0.4509 -4.7192 21 1 3.9212 0.3496 -5.3600 22 6 5.4927 -1.0477 -4.9471 23 7 5.7658 -2.2188 -4.4121 24 14 6.7636 -0.1886 -6.0131 25 1 6.2152 1.1061 -6.4910 26 1 7.9922 0.0585 -5.2166 27 1 7.0938 -1.0473 -7.1789 28 6 2.0127 -0.7453 -3.7468 29 6 1.5298 0.0002 -2.4985 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6317 1.1528 34 1 1.9759 -1.5503 3.8328 35 1 3.6480 -1.1211 3.3987 36 1 2.4993 -1.2003 6.1970 37 1 4.1717 -0.7723 5.7631 38 1 2.7489 0.1790 9.0746 39 1 3.7769 -1.0149 8.2217 40 1 4.7891 1.0302 9.8614 41 1 5.7211 0.2664 8.5317 42 1 4.0260 2.8258 8.4467 43 1 5.6889 2.5735 7.8251 44 1 1.6762 -1.7488 -1.2491 45 1 3.9345 0.3053 -1.2741 46 1 3.9338 -1.2147 -0.3468 47 1 3.7907 -2.5241 -2.4136 48 1 5.1628 -1.3934 -2.5400 49 1 6.6272 -2.6357 -4.5711 50 1 1.5576 -1.7351 -3.7809 51 1 1.7358 -0.1826 -4.6383 52 1 0.4401 0.0213 -2.4870 53 1 1.9137 1.0202 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755845238.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -139.786534 kcal Electronic energy + Delta-G solvation = -30081.721679 eV Core-core repulsion = 25952.697821 eV Total energy + Delta-G solvation = -4129.023858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.11334 -40.47616 -39.49334 -38.27336 -36.72913 -34.55384 -33.18599 -32.79812 -31.84605 -31.74143 -30.46740 -28.57370 -27.14740 -26.00910 -24.62431 -23.58541 -23.00467 -22.27979 -21.89378 -21.49984 -20.65630 -18.78863 -18.32386 -17.96542 -17.57377 -17.11617 -16.84489 -16.74622 -16.44565 -16.30509 -15.79452 -15.36319 -15.27327 -15.11552 -14.88234 -14.70248 -14.52622 -14.32388 -14.00411 -13.94651 -13.57670 -13.21704 -13.16944 -12.99117 -12.80954 -12.75763 -12.63069 -12.56086 -12.39413 -12.30198 -12.15920 -12.07645 -11.95061 -11.80305 -11.57049 -11.47129 -11.21192 -11.10060 -10.76004 -10.71191 -10.66639 -10.53313 -10.05723 -8.65951 -7.87394 -5.30999 1.43785 1.46471 1.56365 1.60785 1.83901 2.50685 2.88174 2.99622 3.26483 3.61508 3.68367 3.72581 3.81723 3.92218 3.96612 3.98833 4.07161 4.15869 4.17989 4.27371 4.31170 4.42285 4.43701 4.47627 4.50123 4.57535 4.61116 4.63051 4.75864 4.79788 4.83483 4.90100 4.93239 4.95726 5.00938 5.06250 5.07246 5.11813 5.19122 5.23788 5.30234 5.39467 5.45225 5.51341 5.58558 5.67626 5.80345 5.93198 6.12729 6.40378 6.60358 7.16424 7.27787 7.89231 8.39119 9.18523 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.002014 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.098662 B =13899.085698 C =15159.899628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.056 0.944 4 N -0.708 5.708 5 C 0.508 3.492 6 O -0.577 6.577 7 C 0.046 3.954 8 O -0.396 6.396 9 C 0.058 3.942 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.141 4.141 13 C -0.150 4.150 14 C 0.031 3.969 15 O -0.403 6.403 16 C -0.072 4.072 17 C -0.120 4.120 18 C 0.177 3.823 19 N -0.613 5.613 20 C -0.260 4.260 21 H 0.063 0.937 22 C -0.052 4.052 23 N -0.932 5.932 24 Si 0.962 3.038 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.141 3.859 29 C -0.116 4.116 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.033 0.967 46 H 0.069 0.931 47 H 0.004 0.996 48 H 0.048 0.952 49 H 0.249 0.751 50 H 0.022 0.978 51 H 0.050 0.950 52 H 0.091 0.909 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 -1.320 27.612 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.050 3.950 3 H 0.074 0.926 4 N -0.361 5.361 5 C 0.295 3.705 6 O -0.456 6.456 7 C -0.033 4.033 8 O -0.315 6.315 9 C -0.018 4.018 10 C 0.010 3.990 11 H 0.082 0.918 12 C -0.179 4.179 13 C -0.187 4.187 14 C -0.045 4.045 15 O -0.323 6.323 16 C -0.091 4.091 17 C -0.159 4.159 18 C 0.052 3.948 19 N -0.337 5.337 20 C -0.390 4.390 21 H 0.080 0.920 22 C -0.247 4.247 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.194 1.194 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.016 3.984 29 C -0.156 4.156 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.022 0.978 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.040 0.960 51 H 0.069 0.931 52 H 0.109 0.891 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.221 -0.297 27.394 28.603 hybrid contribution 1.195 -0.188 -0.801 1.451 sum -7.026 -0.485 26.593 27.510 Atomic orbital electron populations 1.22138 0.93828 1.03111 1.02179 1.20889 0.94786 0.95963 0.83362 0.92584 1.45873 1.66882 1.14725 1.08633 1.20885 0.77243 0.86998 0.85366 1.90706 1.51168 1.18175 1.85577 1.22343 1.03549 0.92324 0.85132 1.88029 1.87494 1.37058 1.18896 1.23031 1.00027 0.95588 0.83189 1.22943 0.92528 0.89027 0.94463 0.91771 1.22941 0.98956 1.01607 0.94385 1.23141 0.98462 0.95505 1.01618 1.23803 0.99540 0.97291 0.83881 1.89003 1.55795 1.57616 1.29892 1.21199 0.94800 0.99996 0.93084 1.22015 0.95888 0.99649 0.98343 1.20586 0.97346 0.92604 0.84293 1.44348 1.01360 1.72112 1.15831 1.19524 0.99856 1.11756 1.07908 0.91976 1.25732 1.01785 0.96058 1.01143 1.70174 1.22738 1.15342 1.49621 0.85284 0.79233 0.78340 0.78078 1.19408 1.21808 1.21711 1.21071 0.83695 0.97072 0.96606 1.21968 1.00786 0.98612 0.94208 0.93725 0.90407 0.90613 0.74761 0.86540 0.88183 0.88751 0.91820 0.88520 0.88471 0.87974 0.90228 0.91636 0.88616 0.89750 0.94835 0.91220 0.97782 0.93390 0.94158 0.96038 0.93101 0.89094 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.13 71.98 0.66 -2.85 16 2 C 0.15 4.16 2.16 44.99 0.10 4.26 16 3 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 4 N -0.71 -16.31 4.36 -442.51 -1.93 -18.24 16 5 C 0.51 13.95 7.87 87.66 0.69 14.64 16 6 O -0.58 -22.29 16.16 16.00 0.26 -22.03 16 7 C 0.05 0.88 6.42 71.24 0.46 1.33 16 8 O -0.40 -10.14 9.87 -126.82 -1.25 -11.39 16 9 C 0.06 0.95 5.39 71.98 0.39 1.34 16 10 C 0.07 1.19 3.71 30.97 0.11 1.31 16 11 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 12 C -0.14 -1.27 6.64 31.58 0.21 -1.06 16 13 C -0.15 -1.37 7.15 31.89 0.23 -1.14 16 14 C 0.03 0.46 7.72 72.66 0.56 1.02 16 15 O -0.40 -9.72 11.18 -147.43 -1.65 -11.36 16 16 C -0.07 -2.12 1.79 -10.77 -0.02 -2.14 16 17 C -0.12 -4.39 5.22 30.67 0.16 -4.23 16 18 C 0.18 8.41 5.31 86.36 0.46 8.87 16 19 N -0.61 -30.78 2.99 -699.10 -2.09 -32.87 16 20 C -0.26 -14.55 9.59 84.03 0.81 -13.75 16 21 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 22 C -0.05 -2.94 4.91 84.86 0.42 -2.52 16 23 N -0.93 -55.30 11.19 21.65 0.24 -55.06 16 24 Si 0.96 45.77 29.59 68.60 2.03 47.80 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 28 C 0.14 5.68 6.52 86.37 0.56 6.24 16 29 C -0.12 -3.71 5.04 30.67 0.15 -3.56 16 30 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 1.65 6.40 -2.39 -0.02 1.63 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.42 6.94 8.39 -92.71 -0.78 6.16 16 34 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 0.56 7.70 -2.39 -0.02 0.55 16 40 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.07 2.20 7.41 -2.39 -0.02 2.18 16 47 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.05 2.64 6.04 -2.39 -0.01 2.62 16 49 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 50 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 51 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 52 H 0.09 2.29 6.36 -2.38 -0.02 2.27 16 53 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -80.16 413.63 1.65 -78.51 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.10 Total: 16.88 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.94 Total: 7.77 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.78 Total: -106.17 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -2.64 Total: -44.79 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -80.16 1.65 -78.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755845238.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.280 kcal (2) G-P(sol) polarization free energy of solvation -80.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds