Wall clock time and date at job start Sat Apr 11 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99893 * 2 1 4 4 C 1.53005 * 109.47371 * 54.67373 * 3 2 1 5 5 C 1.53002 * 109.47126 * 174.67065 * 3 2 1 6 6 H 1.09008 * 109.47009 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46896 * 60.00261 * 5 3 2 8 8 N 1.46502 * 109.47256 * 299.99945 * 5 3 2 9 9 C 1.34774 * 119.99847 * 204.99919 * 8 5 3 10 10 O 1.21350 * 120.00441 * 0.02562 * 9 8 5 11 11 C 1.49456 * 119.99850 * 180.02562 * 9 8 5 12 12 O 1.21350 * 119.99708 * 359.97438 * 11 9 8 13 13 N 1.34769 * 120.00147 * 179.97438 * 11 9 8 14 14 C 1.46502 * 120.00144 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47075 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47288 * 300.00090 * 15 14 13 17 17 C 1.53001 * 109.47091 * 60.00405 * 15 14 13 18 18 C 1.50701 * 109.46737 * 180.02562 * 15 14 13 19 19 H 1.07993 * 120.00511 * 359.97438 * 18 15 14 20 20 C 1.37884 * 119.99829 * 180.02562 * 18 15 14 21 21 N 1.31513 * 119.99824 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00041 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46919 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47177 * 119.99736 * 22 20 18 25 25 H 1.48502 * 109.47099 * 239.99828 * 22 20 18 26 26 C 1.53001 * 109.47433 * 294.67189 * 3 2 1 27 27 C 1.52996 * 117.50001 * 135.83724 * 26 3 2 28 28 C 1.53004 * 117.49502 * 67.17797 * 26 3 2 29 29 H 1.09005 * 109.47187 * 188.12376 * 1 2 3 30 30 H 1.08997 * 109.47272 * 308.12691 * 1 2 3 31 31 H 1.08999 * 109.47021 * 68.12500 * 1 2 3 32 32 H 1.09000 * 109.46913 * 59.99622 * 4 3 2 33 33 H 1.08998 * 109.47332 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46765 * 300.00134 * 4 3 2 35 35 H 1.08998 * 109.46981 * 299.99682 * 7 5 3 36 36 H 1.09000 * 109.47112 * 60.00090 * 7 5 3 37 37 H 1.09001 * 109.46916 * 179.97438 * 7 5 3 38 38 H 0.96999 * 119.99902 * 25.00066 * 8 5 3 39 39 H 0.97007 * 119.99970 * 0.02562 * 13 11 9 40 40 H 1.08999 * 109.47311 * 300.00298 * 14 13 11 41 41 H 1.09000 * 109.46857 * 60.00295 * 14 13 11 42 42 H 1.08996 * 109.47040 * 59.99852 * 16 15 14 43 43 H 1.08996 * 109.47274 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.47145 * 300.00250 * 16 15 14 45 45 H 1.08999 * 109.47324 * 59.99922 * 17 15 14 46 46 H 1.08996 * 109.46876 * 179.97438 * 17 15 14 47 47 H 1.09001 * 109.46535 * 299.99478 * 17 15 14 48 48 H 0.96997 * 120.00085 * 180.02562 * 21 20 18 49 49 H 1.08997 * 115.55081 * 281.51551 * 26 3 2 50 50 H 1.09005 * 117.49714 * 0.02562 * 27 26 3 51 51 H 1.08998 * 117.50222 * 145.01818 * 27 26 3 52 52 H 1.09000 * 117.49762 * 214.97892 * 28 26 3 53 53 H 1.08999 * 117.49982 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4556 2.1107 1.1769 5 6 3.5297 1.1872 0.1340 6 1 3.9731 2.1830 0.1335 7 6 4.0843 0.3821 -1.0429 8 7 3.8578 0.5066 1.3891 9 6 5.0527 0.7155 1.9766 10 8 5.8566 1.4677 1.4662 11 6 5.3876 0.0208 3.2568 12 8 4.5835 -0.7311 3.7674 13 7 6.5826 0.2292 3.8440 14 6 6.9107 -0.4514 5.0991 15 6 8.3151 -0.0432 5.5486 16 6 9.3297 -0.4385 4.4737 17 6 8.3623 1.4711 5.7622 18 6 8.6528 -0.7438 6.8394 19 1 7.9373 -1.4129 7.2939 20 6 9.8750 -0.5298 7.4407 21 7 10.7463 0.2853 6.8874 22 14 10.2934 -1.3977 9.0410 23 1 9.1519 -2.2537 9.4529 24 1 11.5000 -2.2410 8.8461 25 1 10.5605 -0.3879 10.0966 26 6 1.6676 2.0163 -1.3108 27 6 1.2215 3.4774 -1.2264 28 6 0.2021 2.3833 -1.5533 29 1 -0.3634 -1.0174 0.1452 30 1 -0.3634 0.6345 0.8084 31 1 -0.3633 0.3829 -0.9537 32 1 1.6997 1.6042 2.1107 33 1 1.8986 3.1066 1.1766 34 1 0.3731 2.1949 1.0815 35 1 3.6410 -0.6137 -1.0429 36 1 3.8402 0.8885 -1.9768 37 1 5.1669 0.2982 -0.9477 38 1 3.2151 -0.0944 1.7973 39 1 7.2252 0.8305 3.4359 40 1 6.1882 -0.1694 5.8650 41 1 6.8767 -1.5302 4.9471 42 1 9.0855 0.0678 3.5399 43 1 10.3302 -0.1482 4.7941 44 1 9.2961 -1.5173 4.3216 45 1 7.6395 1.7527 6.5279 46 1 9.3626 1.7618 6.0828 47 1 8.1182 1.9774 4.8283 48 1 11.6062 0.4356 7.3102 49 1 2.2620 1.7206 -2.1753 50 1 1.1726 3.9323 -0.2371 51 1 1.5223 4.1430 -2.0355 52 1 -0.1674 2.3295 -2.5773 53 1 -0.5179 2.1178 -0.7792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422486919.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:36 Heat of formation + Delta-G solvation = -104.367707 kcal Electronic energy + Delta-G solvation = -31046.379985 eV Core-core repulsion = 26918.892003 eV Total energy + Delta-G solvation = -4127.487982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94525 -41.02248 -39.63063 -38.19112 -36.88361 -36.51751 -35.02299 -32.75082 -32.43135 -30.72682 -28.05381 -27.89159 -27.58792 -27.22760 -25.40580 -25.08166 -23.35204 -22.89190 -21.41613 -20.75024 -20.44288 -19.57117 -18.11883 -17.81177 -17.39923 -17.27255 -16.93891 -16.61009 -16.53140 -16.32943 -15.68389 -15.60760 -15.46191 -15.02795 -14.77219 -14.59594 -14.45300 -14.19242 -14.04271 -13.73414 -13.22311 -13.20309 -13.15327 -13.11424 -13.00920 -12.76275 -12.71243 -12.68273 -12.55797 -12.28087 -12.20576 -12.11755 -11.97691 -11.76041 -11.50932 -11.30160 -11.19849 -11.04523 -10.76124 -10.62999 -10.41428 -10.34148 -10.29500 -10.11800 -8.01459 -6.17734 0.35538 1.33689 1.43152 1.47520 1.56807 2.15100 2.44866 2.55257 2.75106 2.95672 3.22360 3.44794 3.59142 3.65978 3.77123 4.03463 4.10994 4.23825 4.30712 4.34693 4.38397 4.47092 4.50834 4.62433 4.66959 4.67839 4.73736 4.77333 4.85672 4.91501 4.92525 4.95886 4.99980 5.04039 5.06227 5.14986 5.17200 5.19517 5.22026 5.25532 5.31028 5.36129 5.48183 5.64748 5.67976 5.96005 6.11249 6.18970 6.24314 6.39644 6.41747 6.74466 6.86759 6.97350 7.50105 8.98025 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027928 B = 0.002097 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.349038 B =13346.968552 C =13646.885007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.388 6.388 3 C 0.146 3.854 4 C -0.188 4.188 5 C 0.158 3.842 6 H 0.099 0.901 7 C -0.158 4.158 8 N -0.679 5.679 9 C 0.515 3.485 10 O -0.539 6.539 11 C 0.496 3.504 12 O -0.552 6.552 13 N -0.681 5.681 14 C 0.143 3.857 15 C 0.049 3.951 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.524 4.524 19 H 0.051 0.949 20 C 0.025 3.975 21 N -0.901 5.901 22 Si 0.949 3.051 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.189 4.189 27 C -0.176 4.176 28 C -0.172 4.172 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.418 0.582 39 H 0.413 0.587 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.029 0.971 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.064 0.936 47 H 0.030 0.970 48 H 0.260 0.740 49 H 0.117 0.883 50 H 0.103 0.897 51 H 0.104 0.896 52 H 0.107 0.893 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.745 5.422 -18.756 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.308 6.308 3 C 0.106 3.894 4 C -0.245 4.245 5 C 0.054 3.946 6 H 0.117 0.883 7 C -0.216 4.216 8 N -0.332 5.332 9 C 0.295 3.705 10 O -0.417 6.417 11 C 0.277 3.723 12 O -0.431 6.431 13 N -0.332 5.332 14 C 0.020 3.980 15 C 0.049 3.951 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.562 4.562 19 H 0.069 0.931 20 C -0.175 4.175 21 N -0.540 5.540 22 Si 0.776 3.224 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.208 4.208 27 C -0.213 4.213 28 C -0.208 4.208 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.256 0.744 39 H 0.251 0.749 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.049 0.951 48 H 0.069 0.931 49 H 0.135 0.865 50 H 0.121 0.879 51 H 0.122 0.878 52 H 0.125 0.875 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.445 5.326 -18.716 28.958 hybrid contribution 0.473 -0.391 1.104 1.264 sum -20.972 4.935 -17.611 27.827 Atomic orbital electron populations 1.23266 0.80154 1.03438 1.01664 1.87938 1.21173 1.26653 1.95022 1.21029 0.90887 0.83754 0.93748 1.22597 1.02838 1.01225 0.97846 1.21174 0.93190 0.97457 0.82779 0.88263 1.22133 1.00472 1.01198 0.97793 1.45761 1.16092 1.46782 1.24534 1.19985 0.83293 0.82150 0.85047 1.90743 1.48694 1.37129 1.65100 1.20371 0.83023 0.82880 0.86026 1.90715 1.48982 1.37854 1.65507 1.46059 1.16258 1.46066 1.24860 1.21549 0.98048 0.95535 0.82831 1.18395 0.88916 0.93664 0.94149 1.21703 1.02449 0.98047 0.95948 1.21702 1.01943 0.96774 0.97716 1.21258 1.00968 1.26752 1.07248 0.93082 1.25509 0.96238 0.95735 0.99981 1.69931 1.07561 1.36625 1.39847 0.85647 0.77922 0.78487 0.80381 1.19668 1.20913 1.20876 1.22829 1.00111 0.99095 0.98733 1.23243 1.03234 0.90678 1.04107 1.23259 0.91230 1.02548 1.03807 0.89366 0.92852 0.91575 0.92496 0.90313 0.89910 0.91674 0.89230 0.93541 0.74449 0.74890 0.92731 0.92831 0.95169 0.91758 0.95808 0.95735 0.91763 0.95133 0.93057 0.86522 0.87852 0.87780 0.87472 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.26 113.37 1.05 1.17 16 2 O -0.39 -6.50 9.18 -148.98 -1.37 -7.87 16 3 C 0.15 2.19 0.48 -10.79 -0.01 2.19 16 4 C -0.19 -2.64 6.66 71.98 0.48 -2.16 16 5 C 0.16 3.09 1.94 44.99 0.09 3.18 16 6 H 0.10 2.07 7.58 -2.38 -0.02 2.05 16 7 C -0.16 -2.98 9.08 71.98 0.65 -2.33 16 8 N -0.68 -16.51 4.35 -443.84 -1.93 -18.44 16 9 C 0.51 15.74 7.85 87.27 0.69 16.43 16 10 O -0.54 -18.16 16.14 -3.25 -0.05 -18.21 16 11 C 0.50 17.55 7.89 87.27 0.69 18.24 16 12 O -0.55 -21.41 16.48 -3.25 -0.05 -21.46 16 13 N -0.68 -25.28 4.95 -464.41 -2.30 -27.58 16 14 C 0.14 6.05 4.50 86.38 0.39 6.44 16 15 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 16 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 17 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 18 C -0.52 -27.44 8.01 25.60 0.21 -27.23 16 19 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 20 C 0.03 1.32 5.15 84.66 0.44 1.75 16 21 N -0.90 -48.52 9.35 21.45 0.20 -48.32 16 22 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 C -0.19 -2.18 4.97 -10.79 -0.05 -2.23 16 27 C -0.18 -1.65 9.69 30.62 0.30 -1.35 16 28 C -0.17 -1.42 7.86 30.62 0.24 -1.18 16 29 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.05 0.52 5.77 -2.39 -0.01 0.51 16 31 H 0.07 0.58 5.28 -2.39 -0.01 0.57 16 32 H 0.06 0.98 7.45 -2.39 -0.02 0.96 16 33 H 0.08 1.05 6.65 -2.39 -0.02 1.04 16 34 H 0.08 0.88 5.13 -2.39 -0.01 0.87 16 35 H 0.06 1.28 7.68 -2.39 -0.02 1.27 16 36 H 0.09 1.28 6.21 -2.39 -0.01 1.27 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.42 10.07 7.46 -92.71 -0.69 9.38 16 39 H 0.41 14.95 5.64 -92.70 -0.52 14.43 16 40 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 41 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 43 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 44 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 47 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 48 H 0.26 13.46 8.31 -92.71 -0.77 12.68 16 49 H 0.12 1.34 6.19 -2.39 -0.01 1.32 16 50 H 0.10 0.96 5.89 -2.38 -0.01 0.95 16 51 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.11 0.76 5.14 -2.39 -0.01 0.74 16 Total: -1.00 -60.10 400.41 2.54 -57.55 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.27 Total: 34.80 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 6.29 Total: 4.99 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -4.03 Total: -94.34 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.47 Total: -47.54 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -60.10 2.54 -57.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422486919.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.816 kcal (2) G-P(sol) polarization free energy of solvation -60.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds