Wall clock time and date at job start Sat Apr 11 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47506 * 2 1 4 4 O 1.42901 * 109.46795 * 240.00383 * 2 1 3 5 5 C 1.52995 * 109.47274 * 120.00498 * 2 1 3 6 6 C 1.52999 * 109.47267 * 184.07780 * 5 2 1 7 7 H 1.08997 * 109.58397 * 301.81857 * 6 5 2 8 8 C 1.53192 * 109.58867 * 62.10319 * 6 5 2 9 9 C 1.53038 * 109.31337 * 174.41948 * 8 6 5 10 10 C 1.53035 * 109.54270 * 298.63950 * 9 8 6 11 11 C 1.53190 * 109.31297 * 61.36082 * 10 9 8 12 12 N 1.46926 * 109.58620 * 181.39578 * 6 5 2 13 13 C 1.34772 * 120.63358 * 6.61957 * 12 6 5 14 14 O 1.21354 * 120.00085 * 353.31575 * 13 12 6 15 15 C 1.49451 * 120.00441 * 173.30221 * 13 12 6 16 16 O 1.21347 * 119.99859 * 353.38855 * 15 13 12 17 17 N 1.34773 * 120.00326 * 173.38127 * 15 13 12 18 18 C 1.46499 * 119.99938 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.47032 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47053 * 299.99949 * 19 18 17 21 21 C 1.52998 * 109.47259 * 59.99787 * 19 18 17 22 22 C 1.50694 * 109.47177 * 179.97438 * 19 18 17 23 23 H 1.08005 * 120.00398 * 359.52648 * 22 19 18 24 24 C 1.37877 * 119.99961 * 179.52723 * 22 19 18 25 25 N 1.31516 * 120.00306 * 3.07491 * 24 22 19 26 26 Si 1.86802 * 119.99941 * 183.06911 * 24 22 19 27 27 H 1.48500 * 109.46939 * 94.99658 * 26 24 22 28 28 H 1.48502 * 109.47502 * 214.99557 * 26 24 22 29 29 H 1.48504 * 109.47215 * 334.99849 * 26 24 22 30 30 H 1.09001 * 109.47506 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46711 * 299.99635 * 1 2 3 32 32 H 1.08994 * 109.47014 * 59.99551 * 1 2 3 33 33 H 0.96703 * 113.99807 * 295.08823 * 4 2 1 34 34 H 1.09001 * 109.47113 * 304.07491 * 5 2 1 35 35 H 1.09005 * 109.47261 * 64.07247 * 5 2 1 36 36 H 1.08995 * 109.49810 * 294.37995 * 8 6 5 37 37 H 1.09002 * 109.49416 * 54.43703 * 8 6 5 38 38 H 1.08999 * 109.45486 * 58.66120 * 9 8 6 39 39 H 1.08998 * 109.45836 * 178.62786 * 9 8 6 40 40 H 1.08998 * 109.49825 * 181.31578 * 10 9 8 41 41 H 1.09006 * 109.49229 * 301.41305 * 10 9 8 42 42 H 1.08996 * 109.58393 * 65.15536 * 11 10 9 43 43 H 1.09006 * 109.58580 * 185.58290 * 11 10 9 44 44 H 0.97000 * 119.99780 * 0.02562 * 17 15 13 45 45 H 1.09005 * 109.46884 * 299.99753 * 18 17 15 46 46 H 1.08997 * 109.47594 * 60.00102 * 18 17 15 47 47 H 1.08996 * 109.47633 * 64.79781 * 20 19 18 48 48 H 1.08998 * 109.47438 * 184.80122 * 20 19 18 49 49 H 1.09008 * 109.46695 * 304.79744 * 20 19 18 50 50 H 1.09002 * 109.47269 * 59.99468 * 21 19 18 51 51 H 1.08996 * 109.47226 * 180.02562 * 21 19 18 52 52 H 1.09005 * 109.47262 * 299.99935 * 21 19 18 53 53 H 0.96991 * 120.00162 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2491 6 6 3.5666 -0.6331 1.3015 7 1 3.9892 -1.0736 0.3985 8 6 3.9930 0.8346 1.4049 9 6 5.5095 0.9088 1.5968 10 6 5.8961 0.2008 2.8973 11 6 5.4913 -1.2742 2.8107 12 7 4.0614 -1.3537 2.4825 13 6 3.2197 -2.0741 3.2499 14 8 2.0248 -2.0354 3.0414 15 6 3.7578 -2.9211 4.3574 16 8 4.9564 -3.0554 4.4910 17 7 2.9120 -3.5355 5.2079 18 6 3.4395 -4.3652 6.2939 19 6 2.2778 -4.9423 7.1054 20 6 1.4490 -3.7987 7.6937 21 6 1.3939 -5.7964 6.1942 22 6 2.8205 -5.7963 8.2221 23 1 3.8871 -5.9218 8.3366 24 6 1.9553 -6.4175 9.0977 25 7 0.6560 -6.3144 8.9226 26 14 2.6288 -7.4059 10.5326 27 1 2.6772 -6.5489 11.7445 28 1 1.7470 -8.5734 10.7869 29 1 3.9977 -7.8810 10.2074 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.7842 -1.6143 -1.1961 34 1 1.6183 -0.2515 2.1377 35 1 1.7375 -1.7680 1.2133 36 1 3.7158 1.3593 0.4906 37 1 3.4949 1.2990 2.2560 38 1 6.0059 0.4226 0.7571 39 1 5.8185 1.9529 1.6463 40 1 6.9735 0.2743 3.0451 41 1 5.3805 0.6710 3.7347 42 1 6.0729 -1.7676 2.0321 43 1 5.6736 -1.7600 3.7694 44 1 1.9538 -3.4283 5.1009 45 1 4.0296 -5.1803 5.8747 46 1 4.0696 -3.7569 6.9428 47 1 0.9868 -3.2318 6.8857 48 1 0.6730 -4.2078 8.3407 49 1 2.0970 -3.1418 8.2742 50 1 1.9844 -6.6111 5.7749 51 1 0.5661 -6.2071 6.7722 52 1 1.0013 -5.1790 5.3862 53 1 0.0474 -6.7517 9.5383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422488446.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:44 Heat of formation + Delta-G solvation = -129.624691 kcal Electronic energy + Delta-G solvation = -31627.709726 eV Core-core repulsion = 27499.126519 eV Total energy + Delta-G solvation = -4128.583207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25745 -40.39628 -38.77598 -38.44224 -37.97888 -35.18716 -33.87295 -33.79183 -32.75206 -31.41478 -28.59858 -27.67079 -27.59731 -27.16957 -25.85932 -24.84861 -23.31257 -22.16086 -21.80460 -20.89193 -20.47199 -18.76233 -18.00352 -17.72888 -17.30999 -17.07060 -16.83146 -16.60813 -16.58476 -16.03832 -15.72325 -15.48972 -15.10914 -14.95567 -14.78818 -14.60691 -14.35512 -14.33500 -14.08678 -13.99066 -13.80468 -13.24200 -13.13533 -13.08305 -12.90252 -12.74723 -12.69789 -12.59555 -12.39653 -12.29131 -12.13117 -12.04377 -12.00026 -11.72425 -11.52894 -11.51814 -11.25411 -11.11884 -10.88732 -10.74069 -10.40658 -10.15169 -9.84670 -9.64214 -8.02174 -6.18856 0.35190 1.31461 1.43714 1.47373 1.55379 2.12639 2.42242 2.54124 3.21611 3.30398 3.48698 3.72853 3.80418 3.94368 4.06385 4.08316 4.19820 4.26403 4.32435 4.34050 4.46902 4.51913 4.58987 4.66823 4.68094 4.81145 4.88577 4.90274 4.94898 4.97545 5.00793 5.02818 5.06251 5.07861 5.16402 5.16749 5.21077 5.25051 5.32599 5.36564 5.44267 5.49195 5.62143 5.63210 5.67030 6.01689 6.10743 6.18644 6.28527 6.41194 6.74739 6.82462 6.85934 6.98428 7.49388 8.96850 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.002615 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.491784 B =10703.301431 C =11848.394212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.099 3.901 3 H 0.105 0.895 4 O -0.576 6.576 5 C -0.133 4.133 6 C 0.143 3.857 7 H 0.087 0.913 8 C -0.128 4.128 9 C -0.118 4.118 10 C -0.130 4.130 11 C 0.060 3.940 12 N -0.572 5.572 13 C 0.508 3.492 14 O -0.530 6.530 15 C 0.493 3.507 16 O -0.538 6.538 17 N -0.679 5.679 18 C 0.144 3.856 19 C 0.051 3.949 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.526 4.526 23 H 0.052 0.948 24 C 0.027 3.973 25 N -0.901 5.901 26 Si 0.947 3.053 27 H -0.279 1.279 28 H -0.286 1.286 29 H -0.272 1.272 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.384 0.616 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.127 0.873 44 H 0.412 0.588 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.029 0.971 48 H 0.061 0.939 49 H 0.025 0.975 50 H 0.021 0.979 51 H 0.065 0.935 52 H 0.028 0.972 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 15.198 -17.719 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.040 3.960 3 H 0.123 0.877 4 O -0.384 6.384 5 C -0.171 4.171 6 C 0.042 3.958 7 H 0.105 0.895 8 C -0.166 4.166 9 C -0.155 4.155 10 C -0.169 4.169 11 C -0.061 4.061 12 N -0.304 5.304 13 C 0.290 3.710 14 O -0.409 6.409 15 C 0.275 3.725 16 O -0.418 6.418 17 N -0.330 5.330 18 C 0.021 3.979 19 C 0.051 3.949 20 C -0.181 4.181 21 C -0.182 4.182 22 C -0.565 4.565 23 H 0.070 0.930 24 C -0.173 4.173 25 N -0.540 5.540 26 Si 0.774 3.226 27 H -0.205 1.205 28 H -0.212 1.212 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.250 0.750 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.080 0.920 49 H 0.044 0.956 50 H 0.040 0.960 51 H 0.084 0.916 52 H 0.047 0.953 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.268 15.640 -17.775 24.255 hybrid contribution -0.508 -1.354 1.260 1.918 sum 4.760 14.285 -16.515 22.349 Atomic orbital electron populations 1.22404 0.96021 1.02594 1.02678 1.22127 0.93323 0.96792 0.83727 0.87730 1.86509 1.80910 1.27698 1.43238 1.22755 0.93560 1.02306 0.98459 1.21552 0.95002 0.92969 0.86283 0.89479 1.22028 0.97117 0.94370 1.03068 1.21542 0.94968 1.01584 0.97417 1.21920 1.02438 0.94048 0.98447 1.23011 0.78314 0.98759 1.06025 1.48123 1.09783 1.46238 1.26271 1.20005 0.86455 0.81266 0.83274 1.90789 1.15407 1.65079 1.69583 1.20572 0.86655 0.81663 0.83585 1.90423 1.15222 1.62451 1.73735 1.46085 1.11103 1.46953 1.28865 1.21550 0.97372 0.92385 0.86608 1.18363 0.91127 0.92916 0.92512 1.21687 1.00319 0.96659 0.99454 1.21724 1.00888 0.98439 0.97124 1.21264 0.92888 1.29716 1.12592 0.93014 1.25488 0.95123 0.97057 0.99632 1.69923 1.02134 1.44419 1.37481 0.85710 0.78316 0.78395 0.80170 1.20533 1.21157 1.19714 0.92604 0.91596 0.91464 0.76677 0.91159 0.90774 0.88897 0.92161 0.90985 0.90145 0.88994 0.92625 0.90554 0.85608 0.74995 0.92846 0.92576 0.95160 0.92027 0.95622 0.95952 0.91603 0.95312 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 9.56 71.98 0.69 -2.07 16 2 C 0.10 1.59 3.40 30.59 0.10 1.70 16 3 H 0.10 1.50 6.42 -2.39 -0.02 1.48 16 4 O -0.58 -9.58 12.82 -148.98 -1.91 -11.49 16 5 C -0.13 -2.67 2.77 30.59 0.08 -2.59 16 6 C 0.14 2.74 2.90 44.97 0.13 2.87 16 7 H 0.09 1.61 7.75 -2.39 -0.02 1.59 16 8 C -0.13 -1.92 4.91 30.67 0.15 -1.77 16 9 C -0.12 -1.56 5.88 30.62 0.18 -1.38 16 10 C -0.13 -2.14 6.08 30.67 0.19 -1.95 16 11 C 0.06 1.29 6.04 86.36 0.52 1.81 16 12 N -0.57 -13.58 2.97 -796.60 -2.37 -15.94 16 13 C 0.51 14.92 7.66 87.27 0.67 15.59 16 14 O -0.53 -16.49 11.91 -3.26 -0.04 -16.53 16 15 C 0.49 16.54 7.76 87.27 0.68 17.22 16 16 O -0.54 -19.20 13.13 -3.24 -0.04 -19.24 16 17 N -0.68 -24.13 4.98 -464.41 -2.31 -26.44 16 18 C 0.14 5.84 4.50 86.38 0.39 6.23 16 19 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 20 C -0.12 -5.52 8.06 71.98 0.58 -4.94 16 21 C -0.12 -5.61 8.08 71.98 0.58 -5.03 16 22 C -0.53 -27.12 8.01 25.60 0.21 -26.91 16 23 H 0.05 2.67 7.75 -2.91 -0.02 2.65 16 24 C 0.03 1.39 5.12 84.65 0.43 1.82 16 25 N -0.90 -48.01 9.35 21.45 0.20 -47.81 16 26 Si 0.95 41.93 29.54 68.60 2.03 43.95 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 29 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.38 4.61 9.03 -74.05 -0.67 3.94 16 34 H 0.07 1.66 7.09 -2.39 -0.02 1.65 16 35 H 0.07 1.78 6.38 -2.38 -0.02 1.77 16 36 H 0.09 1.14 6.70 -2.39 -0.02 1.13 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.13 3.40 4.19 -57.90 -0.24 3.16 16 44 H 0.41 14.35 5.69 -92.71 -0.53 13.83 16 45 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.03 1.19 7.00 -2.39 -0.02 1.17 16 48 H 0.06 3.08 6.04 -2.39 -0.01 3.07 16 49 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.07 3.32 5.99 -2.39 -0.01 3.31 16 52 H 0.03 1.14 6.86 -2.38 -0.02 1.12 16 53 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -57.46 398.31 0.60 -56.86 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.51 Total: 33.71 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.55 Total: 2.93 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -4.48 Total: -90.20 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.99 Total: -47.25 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -57.46 0.60 -56.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422488446.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.768 kcal (2) G-P(sol) polarization free energy of solvation -57.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds