Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47281 * 2 1 4 4 O 1.42902 * 109.46995 * 239.99784 * 2 1 3 5 5 C 1.53006 * 109.47134 * 119.99976 * 2 1 3 6 6 C 1.52997 * 109.47239 * 186.31443 * 5 2 1 7 7 H 1.09002 * 109.70079 * 58.69695 * 6 5 2 8 8 C 1.52759 * 109.50931 * 298.57636 * 6 5 2 9 9 C 1.53041 * 109.38662 * 185.70401 * 8 6 5 10 10 C 1.53043 * 109.53513 * 61.24149 * 9 8 6 11 11 C 1.53191 * 109.31160 * 298.63867 * 10 9 8 12 12 N 1.46925 * 109.58522 * 179.05007 * 6 5 2 13 13 C 1.34767 * 120.63360 * 353.42137 * 12 6 5 14 14 O 1.21356 * 120.00101 * 7.16548 * 13 12 6 15 15 C 1.49453 * 120.00253 * 187.17011 * 13 12 6 16 16 O 1.21342 * 119.99978 * 6.30975 * 15 13 12 17 17 N 1.34774 * 119.99744 * 186.31564 * 15 13 12 18 18 C 1.46507 * 119.99668 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.46995 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47086 * 60.00456 * 19 18 17 21 21 C 1.53001 * 109.47257 * 299.99888 * 19 18 17 22 22 C 1.50704 * 109.46929 * 180.02562 * 19 18 17 23 23 H 1.08003 * 120.00046 * 3.22539 * 22 19 18 24 24 C 1.37875 * 119.99857 * 183.23497 * 22 19 18 25 25 N 1.31510 * 120.00123 * 4.32060 * 24 22 19 26 26 Si 1.86797 * 119.99992 * 184.32164 * 24 22 19 27 27 H 1.48498 * 109.47542 * 265.00063 * 26 24 22 28 28 H 1.48503 * 109.47314 * 144.99754 * 26 24 22 29 29 H 1.48507 * 109.46973 * 25.00064 * 26 24 22 30 30 H 1.09002 * 109.47213 * 299.99813 * 1 2 3 31 31 H 1.08996 * 109.47053 * 60.00161 * 1 2 3 32 32 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 33 33 H 0.96704 * 113.99997 * 299.99480 * 4 2 1 34 34 H 1.08997 * 109.47153 * 66.31098 * 5 2 1 35 35 H 1.08997 * 109.46626 * 306.31478 * 5 2 1 36 36 H 1.09003 * 109.56500 * 65.67162 * 8 6 5 37 37 H 1.08998 * 109.39184 * 305.63668 * 8 6 5 38 38 H 1.09001 * 109.45583 * 301.22564 * 9 8 6 39 39 H 1.08996 * 109.45217 * 181.25812 * 9 8 6 40 40 H 1.09000 * 109.49692 * 178.68701 * 10 9 8 41 41 H 1.09001 * 109.49645 * 58.58383 * 10 9 8 42 42 H 1.09008 * 109.58624 * 294.84394 * 11 10 9 43 43 H 1.09002 * 109.59040 * 174.42429 * 11 10 9 44 44 H 0.96996 * 120.00582 * 359.97438 * 17 15 13 45 45 H 1.09001 * 109.46537 * 60.00226 * 18 17 15 46 46 H 1.08995 * 109.47281 * 299.99921 * 18 17 15 47 47 H 1.09002 * 109.46803 * 175.35796 * 20 19 18 48 48 H 1.08998 * 109.46699 * 295.35132 * 20 19 18 49 49 H 1.08998 * 109.47311 * 55.35621 * 20 19 18 50 50 H 1.08996 * 109.47164 * 300.00642 * 21 19 18 51 51 H 1.09001 * 109.46770 * 60.00119 * 21 19 18 52 52 H 1.08995 * 109.47421 * 180.02562 * 21 19 18 53 53 H 0.97003 * 119.99974 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 3.5617 -0.5854 1.3312 7 1 3.8353 0.4693 1.3628 8 6 4.1989 -1.2393 0.1065 9 6 5.7217 -1.2283 0.2592 10 6 6.1174 -2.0330 1.4994 11 6 5.5019 -1.3831 2.7427 12 7 4.0518 -1.2578 2.5421 13 6 3.1877 -1.7552 3.4488 14 8 1.9979 -1.7671 3.2102 15 6 3.6946 -2.2920 4.7482 16 8 4.8678 -2.1766 5.0360 17 7 2.8488 -2.9043 5.6002 18 6 3.3458 -3.4311 6.8738 19 6 2.1911 -4.0724 7.6459 20 6 1.5966 -5.2142 6.8191 21 6 1.1118 -3.0218 7.9150 22 6 2.7023 -4.6136 8.9562 23 1 3.7348 -4.4648 9.2360 24 6 1.8519 -5.2990 9.7977 25 7 0.6182 -5.5544 9.4204 26 14 2.4521 -5.8646 11.4738 27 1 2.9222 -7.2703 11.3828 28 1 1.3395 -5.7773 12.4534 29 1 3.5718 -4.9960 11.9177 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7210 -1.5953 -1.2328 34 1 1.7719 -1.7763 1.1946 35 1 1.5873 -0.2768 2.1356 36 1 3.9193 -0.6857 -0.7899 37 1 3.8492 -2.2682 0.0225 38 1 6.0683 -0.2005 0.3674 39 1 6.1783 -1.6745 -0.6241 40 1 7.2032 -2.0443 1.5946 41 1 5.7494 -3.0544 1.4030 42 1 5.9370 -0.3948 2.8917 43 1 5.6976 -2.0061 3.6155 44 1 1.9109 -2.9963 5.3703 45 1 3.7698 -2.6176 7.4626 46 1 4.1144 -4.1798 6.6821 47 1 0.8294 -5.7237 7.4021 48 1 1.1531 -4.8108 5.9087 49 1 2.3837 -5.9214 6.5574 50 1 1.5354 -2.2084 8.5040 51 1 0.7420 -2.6299 6.9675 52 1 0.2893 -3.4785 8.4654 53 1 0.0201 -6.0369 10.0124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422488447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -126.166508 kcal Electronic energy + Delta-G solvation = -31687.075497 eV Core-core repulsion = 27558.642248 eV Total energy + Delta-G solvation = -4128.433249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25362 -40.41276 -38.83894 -38.42189 -37.91391 -35.17849 -33.83890 -33.61379 -32.75402 -31.58553 -28.52676 -27.66153 -27.59548 -27.16734 -25.84845 -24.70039 -23.24350 -22.33648 -21.70355 -20.87294 -20.45984 -18.76328 -18.02068 -17.74261 -17.40733 -17.02880 -16.80710 -16.65777 -16.28020 -16.04203 -15.68460 -15.58513 -15.27767 -14.98405 -14.78672 -14.69898 -14.36719 -14.13221 -14.04285 -13.93764 -13.58933 -13.28570 -13.17413 -13.07349 -12.84425 -12.70860 -12.67962 -12.60480 -12.33376 -12.29516 -12.09363 -11.96761 -11.92732 -11.84497 -11.61030 -11.52097 -11.26414 -11.03492 -10.75451 -10.69315 -10.40895 -10.14859 -9.81759 -9.61562 -8.00679 -6.19085 0.35441 1.32635 1.43495 1.47289 1.55658 2.12896 2.42481 2.54715 3.21091 3.31445 3.51572 3.69541 3.88695 4.00192 4.05921 4.14197 4.23095 4.31895 4.34136 4.36823 4.46556 4.54588 4.57760 4.66733 4.72188 4.82506 4.91894 4.93242 4.96440 4.99699 5.02467 5.07756 5.08822 5.14176 5.16588 5.20734 5.26416 5.31951 5.36807 5.38924 5.49511 5.50139 5.62740 5.65240 5.66582 6.02436 6.07056 6.22251 6.29008 6.43847 6.75116 6.85348 6.86093 6.98523 7.49433 8.96369 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002601 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.393268 B =10763.358808 C =11892.899155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 H 0.101 0.899 4 O -0.567 6.567 5 C -0.132 4.132 6 C 0.142 3.858 7 H 0.083 0.917 8 C -0.127 4.127 9 C -0.120 4.120 10 C -0.131 4.131 11 C 0.062 3.938 12 N -0.572 5.572 13 C 0.507 3.493 14 O -0.531 6.531 15 C 0.493 3.507 16 O -0.539 6.539 17 N -0.679 5.679 18 C 0.144 3.856 19 C 0.051 3.949 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.526 4.526 23 H 0.051 0.949 24 C 0.027 3.973 25 N -0.900 5.900 26 Si 0.947 3.053 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.384 0.616 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.412 0.588 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.077 0.923 48 H 0.025 0.975 49 H 0.019 0.981 50 H 0.026 0.974 51 H 0.032 0.968 52 H 0.053 0.947 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 10.467 -21.131 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.044 3.956 3 H 0.119 0.881 4 O -0.374 6.374 5 C -0.170 4.170 6 C 0.041 3.959 7 H 0.101 0.899 8 C -0.164 4.164 9 C -0.158 4.158 10 C -0.169 4.169 11 C -0.059 4.059 12 N -0.305 5.305 13 C 0.290 3.710 14 O -0.409 6.409 15 C 0.275 3.725 16 O -0.419 6.419 17 N -0.330 5.330 18 C 0.021 3.979 19 C 0.051 3.949 20 C -0.188 4.188 21 C -0.177 4.177 22 C -0.565 4.565 23 H 0.070 0.930 24 C -0.173 4.173 25 N -0.539 5.539 26 Si 0.774 3.226 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.142 0.858 44 H 0.250 0.750 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.096 0.904 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.046 0.954 51 H 0.051 0.949 52 H 0.072 0.928 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.343 11.028 -21.075 24.379 hybrid contribution -0.529 -1.114 1.444 1.899 sum 4.814 9.915 -19.631 22.513 Atomic orbital electron populations 1.22395 0.95968 1.02618 1.02631 1.21975 0.93216 0.96539 0.83827 0.88144 1.86505 1.76416 1.30218 1.44284 1.22738 0.93558 1.01996 0.98694 1.21559 0.94693 0.96312 0.83352 0.89873 1.22148 0.95024 1.01314 0.97937 1.21595 0.95807 1.00717 0.97680 1.21923 1.01451 0.99123 0.94370 1.22962 0.77360 1.03664 1.01916 1.48155 1.07701 1.54340 1.20280 1.20001 0.86407 0.79728 0.84905 1.90788 1.16286 1.55890 1.77912 1.20595 0.86213 0.79586 0.86142 1.90433 1.16705 1.58710 1.76052 1.46088 1.13201 1.54842 1.18902 1.21550 0.97705 0.96832 0.81829 1.18370 0.91050 0.92430 0.93089 1.21821 1.00898 0.98950 0.97163 1.21654 1.00152 0.97392 0.98535 1.21260 0.96440 1.35493 1.03272 0.93035 1.25487 0.95156 0.95666 1.00966 1.69886 1.06340 1.40992 1.36681 0.85708 0.77925 0.78402 0.80548 1.20604 1.21036 1.19709 0.91912 0.91365 0.92467 0.76715 0.91602 0.90708 0.86830 0.92848 0.91155 0.90556 0.89241 0.92836 0.90534 0.85849 0.75003 0.92759 0.92756 0.90404 0.95599 0.96209 0.95442 0.94949 0.92841 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.53 71.98 0.69 -1.92 16 2 C 0.10 1.56 3.50 30.60 0.11 1.67 16 3 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 4 O -0.57 -7.94 9.94 -148.98 -1.48 -9.42 16 5 C -0.13 -2.63 2.93 30.60 0.09 -2.54 16 6 C 0.14 2.72 2.99 44.83 0.13 2.86 16 7 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 8 C -0.13 -1.98 4.32 30.53 0.13 -1.85 16 9 C -0.12 -1.70 5.89 30.62 0.18 -1.52 16 10 C -0.13 -2.25 6.08 30.67 0.19 -2.06 16 11 C 0.06 1.37 6.02 86.36 0.52 1.89 16 12 N -0.57 -13.79 2.98 -797.39 -2.37 -16.16 16 13 C 0.51 15.10 7.66 87.27 0.67 15.77 16 14 O -0.53 -16.65 11.91 -3.26 -0.04 -16.69 16 15 C 0.49 16.73 7.76 87.27 0.68 17.41 16 16 O -0.54 -19.48 13.14 -3.22 -0.04 -19.52 16 17 N -0.68 -24.39 4.98 -464.41 -2.31 -26.70 16 18 C 0.14 5.89 4.50 86.38 0.39 6.28 16 19 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 20 C -0.13 -5.96 8.04 71.98 0.58 -5.38 16 21 C -0.12 -5.35 8.11 71.98 0.58 -4.77 16 22 C -0.53 -27.20 8.01 25.60 0.21 -27.00 16 23 H 0.05 2.67 7.75 -2.91 -0.02 2.65 16 24 C 0.03 1.40 5.14 84.65 0.44 1.83 16 25 N -0.90 -47.97 9.36 21.45 0.20 -47.76 16 26 Si 0.95 41.96 29.54 68.60 2.03 43.99 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 29 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.38 3.74 9.05 -74.05 -0.67 3.07 16 34 H 0.07 1.53 7.05 -2.39 -0.02 1.51 16 35 H 0.07 1.83 6.43 -2.39 -0.02 1.81 16 36 H 0.11 1.65 5.71 -2.39 -0.01 1.63 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.12 3.41 4.22 -55.15 -0.23 3.18 16 44 H 0.41 14.49 5.68 -92.71 -0.53 13.96 16 45 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.08 3.98 5.53 -2.39 -0.01 3.96 16 48 H 0.03 1.03 7.00 -2.39 -0.02 1.02 16 49 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 52 H 0.05 2.65 6.50 -2.39 -0.02 2.63 16 53 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -57.02 396.38 1.02 -56.00 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.50 Total: 33.27 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.55 Total: 3.02 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -4.49 Total: -90.63 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -1.56 Total: -45.64 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -57.02 1.02 -56.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422488447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.170 kcal (2) G-P(sol) polarization free energy of solvation -57.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds