Wall clock time and date at job start Sat Apr 11 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99474 * 2 1 4 4 C 1.53002 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47215 * 65.00008 * 4 3 2 6 6 C 1.37102 * 119.99968 * 269.99677 * 5 4 3 7 7 H 1.07996 * 119.99761 * 142.28717 * 6 5 4 8 8 C 1.38940 * 120.00037 * 322.28742 * 6 5 4 9 9 N 1.31411 * 120.00170 * 158.93425 * 8 6 5 10 10 Si 1.86804 * 120.00120 * 338.93485 * 8 6 5 11 11 H 1.48501 * 109.47354 * 95.32033 * 10 8 6 12 12 H 1.48504 * 109.47160 * 215.31617 * 10 8 6 13 13 H 1.48503 * 109.47186 * 335.31531 * 10 8 6 14 14 C 1.34775 * 120.00038 * 89.99741 * 5 4 3 15 15 O 1.21293 * 119.99788 * 4.75447 * 14 5 4 16 16 C 1.50703 * 120.00085 * 184.75231 * 14 5 4 17 17 C 1.52999 * 109.47119 * 182.33389 * 16 14 5 18 18 H 1.08997 * 109.47371 * 56.35642 * 17 16 14 19 19 C 1.52997 * 109.47280 * 176.35822 * 17 16 14 20 20 N 1.46502 * 109.46989 * 296.35422 * 17 16 14 21 21 C 1.34774 * 119.99985 * 155.00059 * 20 17 16 22 22 O 1.21284 * 119.99938 * 0.02562 * 21 20 17 23 23 C 1.50699 * 120.00118 * 180.02562 * 21 20 17 24 24 C 1.53000 * 109.46973 * 299.99983 * 23 21 20 25 25 C 1.52996 * 109.47322 * 180.02562 * 24 23 21 26 26 C 1.53007 * 109.47072 * 59.99914 * 25 24 23 27 27 C 1.53000 * 109.47117 * 300.00211 * 26 25 24 28 28 C 1.52996 * 109.47322 * 59.99942 * 27 26 25 29 29 H 1.09000 * 109.47312 * 60.00312 * 1 2 3 30 30 H 1.09003 * 109.46555 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47424 * 300.00010 * 1 2 3 32 32 H 1.08994 * 109.47404 * 60.00337 * 3 2 1 33 33 H 1.08996 * 109.47219 * 299.99405 * 3 2 1 34 34 H 1.08994 * 109.47446 * 304.99789 * 4 3 2 35 35 H 1.08999 * 109.46947 * 184.99991 * 4 3 2 36 36 H 0.97003 * 120.00173 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.46890 * 62.32729 * 16 14 5 38 38 H 1.09000 * 109.46838 * 302.32793 * 16 14 5 39 39 H 1.09008 * 109.47294 * 59.99248 * 19 17 16 40 40 H 1.08993 * 109.47673 * 179.97438 * 19 17 16 41 41 H 1.09006 * 109.47136 * 299.99916 * 19 17 16 42 42 H 0.96997 * 119.99736 * 335.28366 * 20 17 16 43 43 H 1.08999 * 109.47480 * 59.99965 * 23 21 20 44 44 H 1.09004 * 109.46732 * 299.99906 * 24 23 21 45 45 H 1.09001 * 109.47070 * 59.99714 * 24 23 21 46 46 H 1.08999 * 109.47251 * 300.00055 * 25 24 23 47 47 H 1.09002 * 109.47589 * 180.02562 * 25 24 23 48 48 H 1.09003 * 109.47146 * 179.97438 * 26 25 24 49 49 H 1.08999 * 109.46968 * 59.99968 * 26 25 24 50 50 H 1.09004 * 109.46732 * 300.00103 * 27 26 25 51 51 H 1.09001 * 109.47070 * 180.02562 * 27 26 25 52 52 H 1.08993 * 109.47286 * 180.02562 * 28 27 26 53 53 H 1.08999 * 109.47251 * 59.99945 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0980 -0.7990 -1.3345 7 1 3.8214 -1.3109 -2.2443 8 6 4.5770 -1.5217 -0.2488 9 7 4.3188 -2.8063 -0.1492 10 14 5.5881 -0.6672 1.0693 11 1 4.7010 -0.2638 2.1898 12 1 6.6308 -1.5967 1.5735 13 1 6.2362 0.5379 0.4924 14 6 4.2633 1.3331 -2.3200 15 8 4.2395 2.5417 -2.2215 16 6 4.6134 0.6911 -3.6377 17 6 4.9492 1.7777 -4.6611 18 1 5.7549 2.4028 -4.2762 19 6 5.3922 1.1246 -5.9718 20 7 3.7636 2.6035 -4.9034 21 6 3.9030 3.8716 -5.3381 22 8 5.0100 4.3290 -5.5290 23 6 2.6835 4.7213 -5.5868 24 6 1.8094 4.0589 -6.6536 25 6 0.5716 4.9218 -6.9066 26 6 1.0056 6.3068 -7.3907 27 6 1.8797 6.9692 -6.3239 28 6 3.1176 6.1063 -6.0709 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8507 0.5687 0.8427 35 1 3.9783 2.1767 0.0902 36 1 4.6535 -3.3110 0.6086 37 1 3.7652 0.1063 -3.9937 38 1 5.4756 0.0375 -3.5057 39 1 4.5865 0.4993 -6.3567 40 1 5.6311 1.8986 -6.7010 41 1 6.2744 0.5101 -5.7916 42 1 2.8785 2.2389 -4.7471 43 1 2.1153 4.8209 -4.6620 44 1 2.3777 3.9593 -7.5784 45 1 1.5006 3.0720 -6.3088 46 1 0.0032 5.0218 -5.9819 47 1 -0.0514 4.4497 -7.6663 48 1 0.1237 6.9214 -7.5714 49 1 1.5740 6.2068 -8.3154 50 1 1.3113 7.0691 -5.3992 51 1 2.1886 7.9560 -6.6687 52 1 3.7400 6.5779 -5.3106 53 1 3.6860 6.0063 -6.9956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457185910.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:56 Heat of formation + Delta-G solvation = -153.216491 kcal Electronic energy + Delta-G solvation = -31769.827779 eV Core-core repulsion = 27640.221555 eV Total energy + Delta-G solvation = -4129.606224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36014 -40.62249 -38.80845 -38.42942 -36.93632 -36.27474 -33.89837 -33.15434 -31.70669 -31.56637 -30.89064 -28.70368 -27.21228 -26.48653 -24.96552 -24.09750 -23.45497 -22.21201 -21.32652 -20.81846 -20.52863 -18.91674 -18.16465 -17.98815 -17.49343 -17.31395 -16.95197 -16.35678 -16.21957 -16.03169 -15.81575 -15.66238 -15.33353 -15.04411 -14.98740 -14.63958 -14.52273 -14.37626 -13.90867 -13.80462 -13.61044 -13.29232 -13.23169 -13.21327 -13.09721 -13.02956 -12.76996 -12.66116 -12.54464 -12.40934 -12.19754 -12.03522 -12.02014 -11.80333 -11.69333 -11.51263 -11.33453 -11.04400 -10.99442 -10.56787 -10.53803 -10.36526 -9.90882 -9.67302 -8.41450 -5.98644 1.19362 1.32346 1.40888 1.78156 1.92898 2.23087 2.35568 2.59356 2.93450 3.16334 3.66224 3.75810 3.81855 3.90616 3.99945 4.12102 4.18820 4.27425 4.29077 4.31718 4.36630 4.39365 4.46786 4.47881 4.56317 4.57534 4.58586 4.60722 4.67223 4.71802 4.73350 4.77765 4.86685 4.89063 4.93435 4.97887 5.11519 5.13875 5.19031 5.25738 5.26928 5.31964 5.36965 5.40996 5.49984 5.56320 5.66432 6.14675 6.30954 6.41924 6.68076 7.06055 7.39220 7.50278 7.84412 8.73050 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.003251 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.262216 B = 8609.867289 C = 9537.843968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.064 3.936 4 C 0.091 3.909 5 N -0.467 5.467 6 C -0.318 4.318 7 H 0.088 0.912 8 C 0.039 3.961 9 N -0.894 5.894 10 Si 0.915 3.085 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.272 1.272 14 C 0.474 3.526 15 O -0.610 6.610 16 C -0.119 4.119 17 C 0.162 3.838 18 H 0.053 0.947 19 C -0.149 4.149 20 N -0.699 5.699 21 C 0.516 3.484 22 O -0.593 6.593 23 C -0.100 4.100 24 C -0.104 4.104 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.115 4.115 28 C -0.096 4.096 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.274 0.726 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.404 0.596 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.071 0.929 52 H 0.045 0.955 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 11.126 -10.465 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.014 4.014 4 C -0.032 4.032 5 N -0.188 5.188 6 C -0.446 4.446 7 H 0.106 0.894 8 C -0.165 4.165 9 N -0.531 5.531 10 Si 0.743 3.257 11 H -0.194 1.194 12 H -0.216 1.216 13 H -0.196 1.196 14 C 0.264 3.736 15 O -0.496 6.496 16 C -0.159 4.159 17 C 0.057 3.943 18 H 0.072 0.928 19 C -0.207 4.207 20 N -0.349 5.349 21 C 0.304 3.696 22 O -0.474 6.474 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.157 4.157 27 C -0.153 4.153 28 C -0.134 4.134 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.239 0.761 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.064 0.936 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.181 11.653 -10.422 18.130 hybrid contribution 0.322 -0.118 1.361 1.404 sum -8.858 11.535 -9.060 17.135 Atomic orbital electron populations 1.22855 0.80554 1.03074 1.00415 1.88177 1.20512 1.27330 1.95320 1.22757 0.93040 0.85149 1.00457 1.21795 0.94329 0.98525 0.88534 1.43770 1.58498 1.06480 1.10092 1.18793 1.43193 0.79786 1.02828 0.89402 1.25619 0.96635 0.95363 0.98854 1.69818 1.42777 1.08989 1.31533 0.86339 0.79580 0.78924 0.80834 1.19370 1.21573 1.19649 1.20958 0.78744 0.86462 0.87395 1.90567 1.57865 1.15142 1.85981 1.21715 1.04878 0.98203 0.91130 1.20587 0.88235 0.90708 0.94808 0.92822 1.22062 1.02572 1.00514 0.95582 1.45830 1.09696 1.12959 1.66380 1.21131 0.91247 0.81949 0.75258 1.90619 1.29198 1.73176 1.54372 1.21348 0.93776 0.95391 1.01589 1.21514 0.96280 0.99151 0.97285 1.21533 0.96274 0.95264 1.02155 1.21563 0.99701 0.96295 0.98091 1.21544 0.95399 0.98457 0.99860 1.21284 0.97971 0.93374 1.00740 0.93604 0.89604 0.92970 0.91151 0.93471 0.92222 0.89654 0.91589 0.87850 0.87639 0.90600 0.93163 0.90516 0.76095 0.88434 0.91878 0.90667 0.91322 0.90236 0.90468 0.92072 0.91550 0.91060 0.93592 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.39 -15.85 10.18 -148.98 -1.52 -17.37 16 3 C 0.06 2.33 6.28 71.98 0.45 2.79 16 4 C 0.09 3.90 4.67 86.38 0.40 4.31 16 5 N -0.47 -21.35 2.16 -635.55 -1.37 -22.72 16 6 C -0.32 -15.93 8.54 84.04 0.72 -15.21 16 7 H 0.09 4.58 7.31 -2.91 -0.02 4.56 16 8 C 0.04 2.05 5.33 84.92 0.45 2.50 16 9 N -0.89 -49.18 13.96 21.66 0.30 -48.88 16 10 Si 0.92 42.30 24.96 68.60 1.71 44.01 16 11 H -0.27 -11.86 6.69 99.48 0.67 -11.19 16 12 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 14 C 0.47 20.30 7.49 87.66 0.66 20.96 16 15 O -0.61 -28.22 14.84 -3.07 -0.05 -28.26 16 16 C -0.12 -4.16 3.88 29.85 0.12 -4.04 16 17 C 0.16 5.30 2.15 44.99 0.10 5.39 16 18 H 0.05 2.16 7.47 -2.39 -0.02 2.14 16 19 C -0.15 -3.90 9.48 71.98 0.68 -3.22 16 20 N -0.70 -21.14 3.96 -442.54 -1.75 -22.89 16 21 C 0.52 16.64 7.12 87.66 0.62 17.27 16 22 O -0.59 -23.95 15.64 -3.04 -0.05 -24.00 16 23 C -0.10 -2.38 2.53 -11.54 -0.03 -2.41 16 24 C -0.10 -1.85 5.10 30.59 0.16 -1.70 16 25 C -0.11 -1.57 5.92 30.60 0.18 -1.39 16 26 C -0.12 -1.63 5.92 30.60 0.18 -1.45 16 27 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 28 C -0.10 -2.25 4.49 30.60 0.14 -2.11 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 2.70 3.19 -2.39 -0.01 2.69 16 35 H 0.09 3.56 7.36 -2.39 -0.02 3.54 16 36 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.10 3.28 7.90 -2.39 -0.02 3.26 16 38 H 0.11 3.71 7.97 -2.39 -0.02 3.69 16 39 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.40 10.61 8.03 -92.71 -0.74 9.86 16 43 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.07 1.21 7.57 -2.39 -0.02 1.19 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 51 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 53 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 Total: -1.00 -68.09 414.00 3.64 -64.46 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.09 Total: 33.66 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 6.26 Total: 21.97 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -2.82 Total: -94.48 kcal Atomic # 8 Polarization: -68.01 SS G_CDS: -1.61 Total: -69.62 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.71 Total: 44.01 kcal Total: -68.09 3.64 -64.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457185910.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.761 kcal (2) G-P(sol) polarization free energy of solvation -68.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds