Wall clock time and date at job start Sat Apr 11 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46960 * 2 1 4 4 C 1.52997 * 109.47497 * 240.00503 * 2 1 3 5 5 N 1.46503 * 109.47420 * 64.99871 * 4 2 1 6 6 C 1.46500 * 119.99744 * 270.00490 * 5 4 2 7 7 C 1.34769 * 120.00082 * 89.99966 * 5 4 2 8 8 O 1.21583 * 120.00289 * 3.83399 * 7 5 4 9 9 N 1.34783 * 119.99936 * 183.83903 * 7 5 4 10 10 C 1.46497 * 119.99807 * 185.44543 * 9 7 5 11 11 C 1.53004 * 109.47191 * 185.11363 * 10 9 7 12 12 C 1.50697 * 115.54786 * 57.06919 * 11 10 9 13 13 H 1.08002 * 119.99936 * 270.64950 * 12 11 10 14 14 C 1.37882 * 120.00032 * 90.37480 * 12 11 10 15 15 N 1.31512 * 119.99934 * 172.35786 * 14 12 11 16 16 Si 1.86799 * 119.99786 * 352.35242 * 14 12 11 17 17 H 1.48504 * 109.46870 * 93.56532 * 16 14 12 18 18 H 1.48499 * 109.47270 * 213.56104 * 16 14 12 19 19 H 1.48496 * 109.47387 * 333.56916 * 16 14 12 20 20 C 1.52995 * 117.50097 * 202.73932 * 11 10 9 21 21 C 1.52998 * 117.49881 * 271.40253 * 11 10 9 22 22 C 1.50697 * 109.47128 * 119.99915 * 2 1 3 23 23 O 1.20831 * 119.99779 * 120.00553 * 22 2 1 24 24 O 1.34222 * 120.00220 * 300.00387 * 22 2 1 25 25 C 1.45200 * 117.00189 * 179.97438 * 24 22 2 26 26 C 1.53003 * 109.47388 * 59.99883 * 25 24 22 27 27 C 1.52994 * 109.47482 * 180.02562 * 25 24 22 28 28 C 1.53001 * 109.47152 * 299.99961 * 25 24 22 29 29 H 1.09005 * 109.46610 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47356 * 299.99464 * 1 2 3 31 31 H 1.09004 * 109.47026 * 59.99832 * 1 2 3 32 32 H 1.08996 * 109.46748 * 304.99824 * 4 2 1 33 33 H 1.09000 * 109.47463 * 185.00041 * 4 2 1 34 34 H 1.08999 * 109.47094 * 264.59815 * 6 5 4 35 35 H 1.08997 * 109.47370 * 24.59713 * 6 5 4 36 36 H 1.08997 * 109.47096 * 144.59755 * 6 5 4 37 37 H 0.96995 * 120.00094 * 5.44453 * 9 7 5 38 38 H 1.09008 * 109.47316 * 65.11735 * 10 9 7 39 39 H 1.08994 * 109.47504 * 305.11638 * 10 9 7 40 40 H 0.96995 * 119.99903 * 180.02562 * 15 14 12 41 41 H 1.08992 * 117.50043 * 215.00215 * 20 11 10 42 42 H 1.09004 * 117.50100 * 0.02599 * 20 11 10 43 43 H 1.09006 * 117.50037 * 359.97181 * 21 11 10 44 44 H 1.08999 * 117.49788 * 144.97000 * 21 11 10 45 45 H 1.09001 * 109.46781 * 60.00132 * 26 25 24 46 46 H 1.08993 * 109.47347 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.46998 * 300.00433 * 26 25 24 48 48 H 1.09006 * 109.47471 * 59.99976 * 27 25 24 49 49 H 1.09002 * 109.47622 * 179.97438 * 27 25 24 50 50 H 1.09001 * 109.47065 * 300.00099 * 27 25 24 51 51 H 1.09004 * 109.46952 * 60.00122 * 28 25 24 52 52 H 1.08996 * 109.47353 * 179.97438 * 28 25 24 53 53 H 1.08999 * 109.47146 * 300.00214 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6526 0.0355 -2.4424 6 6 0.3747 -0.2422 -3.1028 7 6 2.4716 0.9871 -2.9324 8 8 3.5620 1.1700 -2.4267 9 7 2.0818 1.7360 -3.9830 10 6 3.0155 2.6871 -4.5911 11 6 2.2913 3.4931 -5.6713 12 6 1.0702 4.2467 -5.2107 13 1 0.1013 3.7702 -5.2330 14 6 1.1908 5.5427 -4.7556 15 7 0.1138 6.2514 -4.4962 16 14 2.8840 6.2916 -4.5074 17 1 3.2839 7.0283 -5.7332 18 1 2.8467 7.2292 -3.3564 19 1 3.8675 5.2127 -4.2355 20 6 3.1458 4.1343 -6.7665 21 6 2.2737 2.9184 -7.0891 22 6 2.0323 -0.7104 1.2304 23 8 2.7271 -1.6927 1.1196 24 8 1.7080 -0.2519 2.4495 25 6 2.2267 -0.9864 3.5896 26 6 3.7561 -0.9860 3.5437 27 6 1.7547 -0.3200 4.8833 28 6 1.7155 -2.4277 3.5431 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6055 -1.7196 -1.2952 33 1 3.1264 -0.7993 -1.2056 34 1 0.5343 -0.9411 -3.9238 35 1 -0.3186 -0.6785 -2.3838 36 1 -0.0424 0.6865 -3.4922 37 1 1.1831 1.6453 -4.3365 38 1 3.8471 2.1435 -5.0398 39 1 3.3948 3.3639 -3.8256 40 1 0.1987 7.1632 -4.1764 41 1 2.8248 5.1012 -7.1539 42 1 4.2240 3.9816 -6.7178 43 1 2.7785 1.9662 -7.2525 44 1 1.3787 3.0850 -7.6886 45 1 4.1202 0.0408 3.5768 46 1 4.1454 -1.5377 4.3992 47 1 4.0920 -1.4610 2.6220 48 1 0.6651 -0.3207 4.9159 49 1 2.1437 -0.8716 5.7392 50 1 2.1185 0.7070 4.9167 51 1 2.0515 -2.9028 2.6214 52 1 2.1052 -2.9793 4.3986 53 1 0.6260 -2.4281 3.5758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458746046.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:01 Heat of formation + Delta-G solvation = -109.486731 kcal Electronic energy + Delta-G solvation = -31126.871583 eV Core-core repulsion = 26999.161624 eV Total energy + Delta-G solvation = -4127.709960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07665 -41.18865 -38.97550 -38.33284 -37.04264 -35.38178 -35.04911 -34.20982 -33.63291 -28.98402 -28.46152 -28.39829 -28.30936 -27.35565 -26.10254 -25.26458 -23.30658 -22.31569 -21.19767 -20.64470 -20.42435 -19.04725 -18.43701 -18.20570 -17.66341 -17.17727 -17.10072 -16.90041 -16.61624 -15.75440 -15.65774 -15.47720 -15.21221 -14.85398 -14.74715 -14.64350 -14.56859 -14.35499 -14.11361 -13.79670 -13.53904 -13.51171 -13.36750 -13.10874 -13.08569 -12.96164 -12.89173 -12.83239 -12.59438 -12.49520 -12.39064 -12.17044 -12.11237 -12.03080 -11.95485 -11.63563 -11.41300 -11.27920 -10.96746 -10.91337 -10.65173 -10.36772 -10.03806 -9.46484 -8.29511 -6.33037 1.13391 1.32754 1.40000 1.41723 1.50926 1.89507 2.17863 2.37151 2.99370 3.06141 3.36887 3.51880 3.71271 3.73772 3.77904 3.82610 3.93809 4.06474 4.16689 4.28643 4.40219 4.42743 4.46033 4.55474 4.56238 4.58944 4.63218 4.72312 4.73850 4.80082 4.81609 4.83793 4.85097 4.88158 4.89550 4.91137 4.94077 5.09952 5.12522 5.23287 5.23912 5.28148 5.31365 5.48986 5.51635 5.54253 5.66623 5.73213 5.95598 6.30121 6.73860 6.74983 7.06386 7.36687 7.60909 8.84891 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.002611 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.986211 B =10719.552026 C =11279.081458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.087 0.913 4 C 0.157 3.843 5 N -0.625 5.625 6 C 0.069 3.931 7 C 0.696 3.304 8 O -0.642 6.642 9 N -0.714 5.714 10 C 0.180 3.820 11 C -0.039 4.039 12 C -0.474 4.474 13 H 0.050 0.950 14 C 0.031 3.969 15 N -0.940 5.940 16 Si 0.921 3.079 17 H -0.267 1.267 18 H -0.304 1.304 19 H -0.245 1.245 20 C -0.193 4.193 21 C -0.150 4.150 22 C 0.479 3.521 23 O -0.519 6.519 24 O -0.356 6.356 25 C 0.103 3.897 26 C -0.182 4.182 27 C -0.137 4.137 28 C -0.177 4.177 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.408 0.592 38 H 0.053 0.947 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.093 0.907 47 H 0.060 0.940 48 H 0.072 0.928 49 H 0.100 0.900 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.090 0.910 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 -18.454 13.004 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.105 0.895 4 C 0.033 3.967 5 N -0.362 5.362 6 C -0.073 4.073 7 C 0.397 3.603 8 O -0.524 6.524 9 N -0.369 5.369 10 C 0.055 3.945 11 C -0.041 4.041 12 C -0.512 4.512 13 H 0.068 0.932 14 C -0.167 4.167 15 N -0.580 5.580 16 Si 0.748 3.252 17 H -0.192 1.192 18 H -0.232 1.232 19 H -0.168 1.168 20 C -0.231 4.231 21 C -0.187 4.187 22 C 0.323 3.677 23 O -0.408 6.408 24 O -0.273 6.273 25 C 0.067 3.933 26 C -0.240 4.240 27 C -0.194 4.194 28 C -0.234 4.234 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.105 0.895 45 H 0.074 0.926 46 H 0.112 0.888 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.119 0.881 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.109 0.891 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.682 -18.466 13.389 22.819 hybrid contribution 0.375 1.124 0.084 1.188 sum 1.057 -17.342 13.473 21.986 Atomic orbital electron populations 1.21853 0.89695 1.03967 1.04058 1.21513 1.00393 1.00585 0.89889 0.89492 1.21033 1.00765 0.94072 0.80806 1.46921 1.21227 1.38121 1.29918 1.22128 0.83842 1.02213 0.99130 1.16155 0.83722 0.79965 0.80470 1.90840 1.24041 1.73603 1.63932 1.44995 1.17692 1.40844 1.33387 1.20773 0.90140 0.89282 0.94286 1.19457 0.96822 0.99998 0.87779 1.20304 0.92272 0.96869 1.41746 0.93176 1.25604 0.98996 0.97602 0.94526 1.70009 1.30365 1.10320 1.47303 0.86162 0.82682 0.78939 0.77441 1.19234 1.23161 1.16817 1.22983 0.97276 0.97761 1.05075 1.22898 1.01119 0.96319 0.98402 1.23489 0.76748 0.82362 0.85116 1.90565 1.35968 1.26728 1.87567 1.86561 1.69631 1.56110 1.15006 1.22543 0.93994 0.92518 0.84208 1.22480 0.94410 1.02740 1.04334 1.21878 1.02774 1.01375 0.93373 1.22436 1.02017 0.94521 1.04399 0.89968 0.91092 0.90395 0.87030 0.91703 0.90837 0.87593 0.91629 0.75453 0.92862 0.94793 0.92742 0.90422 0.88464 0.87871 0.89493 0.92586 0.88796 0.92102 0.90939 0.88093 0.91903 0.91791 0.89104 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.11 71.98 0.58 -1.96 16 2 C -0.10 -2.54 3.03 -11.54 -0.04 -2.57 16 3 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 4 C 0.16 4.02 4.25 86.38 0.37 4.38 16 5 N -0.63 -17.17 2.70 -864.94 -2.33 -19.50 16 6 C 0.07 1.30 9.10 127.77 1.16 2.47 16 7 C 0.70 26.00 8.27 179.06 1.48 27.48 16 8 O -0.64 -29.27 15.88 -3.98 -0.06 -29.33 16 9 N -0.71 -26.65 5.25 -478.53 -2.51 -29.16 16 10 C 0.18 7.47 5.34 86.38 0.46 7.93 16 11 C -0.04 -1.66 0.93 -52.93 -0.05 -1.71 16 12 C -0.47 -24.59 8.92 25.60 0.23 -24.36 16 13 H 0.05 2.81 8.06 -2.91 -0.02 2.78 16 14 C 0.03 1.73 5.46 84.66 0.46 2.19 16 15 N -0.94 -56.34 13.96 21.45 0.30 -56.04 16 16 Si 0.92 44.35 25.04 68.60 1.72 46.07 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 19 H -0.24 -11.29 5.52 99.48 0.55 -10.74 16 20 C -0.19 -7.42 7.70 30.62 0.24 -7.19 16 21 C -0.15 -5.27 9.94 30.62 0.30 -4.96 16 22 C 0.48 12.18 6.57 71.24 0.47 12.65 16 23 O -0.52 -14.52 11.42 21.95 0.25 -14.27 16 24 O -0.36 -8.40 9.79 -51.34 -0.50 -8.90 16 25 C 0.10 1.90 1.13 -10.79 -0.01 1.89 16 26 C -0.18 -3.55 8.37 71.98 0.60 -2.94 16 27 C -0.14 -1.79 8.85 71.98 0.64 -1.15 16 28 C -0.18 -2.85 8.37 71.98 0.60 -2.24 16 29 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 31 H 0.08 1.45 5.99 -2.38 -0.01 1.44 16 32 H 0.11 2.19 8.07 -2.39 -0.02 2.17 16 33 H 0.06 2.07 7.18 -2.39 -0.02 2.05 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.39 6.23 -2.39 -0.01 1.37 16 36 H 0.07 1.39 6.43 -2.39 -0.02 1.37 16 37 H 0.41 13.93 5.97 -92.71 -0.55 13.37 16 38 H 0.05 2.05 8.11 -2.38 -0.02 2.03 16 39 H 0.03 1.61 6.29 -2.39 -0.02 1.60 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.08 3.20 7.29 -2.39 -0.02 3.18 16 42 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 43 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 44 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.49 5.89 -2.39 -0.01 1.48 16 48 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.06 1.32 5.89 -2.39 -0.01 1.30 16 52 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -71.42 411.78 4.54 -66.88 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.18 Total: 34.37 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 7.50 Total: 9.89 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -4.55 Total: -104.71 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.32 Total: -52.50 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.72 Total: 46.07 kcal Total: -71.42 4.54 -66.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458746046.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.612 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds