Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46931 * 2 1 4 4 C 1.50697 * 109.46989 * 240.00757 * 2 1 3 5 5 H 1.07999 * 119.99855 * 239.99802 * 4 2 1 6 6 C 1.37876 * 120.00358 * 59.99698 * 4 2 1 7 7 N 1.31516 * 120.00097 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00325 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47278 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47167 * 300.00125 * 8 6 4 11 11 H 1.48504 * 109.47217 * 60.00096 * 8 6 4 12 12 N 1.46500 * 109.47309 * 120.00650 * 2 1 3 13 13 C 1.46501 * 120.00055 * 66.35116 * 12 2 1 14 14 C 1.34772 * 119.99507 * 246.34971 * 12 2 1 15 15 O 1.21284 * 119.99571 * 184.33908 * 14 12 2 16 16 C 1.50696 * 120.00324 * 4.33605 * 14 12 2 17 17 C 1.53041 * 109.46058 * 281.38737 * 16 14 12 18 18 C 1.53196 * 109.30990 * 178.61471 * 17 16 14 19 19 N 1.46922 * 108.77701 * 54.64126 * 18 17 16 20 20 C 1.34774 * 120.63658 * 126.41574 * 19 18 17 21 21 O 1.21513 * 120.00466 * 179.97438 * 20 19 18 22 22 O 1.34642 * 119.99477 * 359.96773 * 20 19 18 23 23 C 1.45205 * 116.99527 * 180.02562 * 22 20 19 24 24 C 1.53005 * 109.47006 * 60.00474 * 23 22 20 25 25 C 1.53007 * 109.46724 * 180.02562 * 23 22 20 26 26 C 1.52991 * 109.47299 * 300.00391 * 23 22 20 27 27 C 1.46932 * 118.73655 * 306.38444 * 19 18 17 28 28 C 1.53047 * 109.46109 * 161.32165 * 16 14 12 29 29 H 1.09006 * 109.46738 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46832 * 299.99432 * 1 2 3 31 31 H 1.08994 * 109.47287 * 59.99672 * 1 2 3 32 32 H 0.96997 * 120.00112 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47405 * 92.69753 * 13 12 2 34 34 H 1.08998 * 109.46436 * 212.70086 * 13 12 2 35 35 H 1.08999 * 109.46702 * 332.69565 * 13 12 2 36 36 H 1.09001 * 109.46166 * 41.35274 * 16 14 12 37 37 H 1.08999 * 109.49756 * 298.56620 * 17 16 14 38 38 H 1.08997 * 109.49929 * 58.66612 * 17 16 14 39 39 H 1.09002 * 109.59002 * 294.84857 * 18 17 16 40 40 H 1.09007 * 109.69961 * 174.49485 * 18 17 16 41 41 H 1.09002 * 109.46668 * 59.99639 * 24 23 22 42 42 H 1.08997 * 109.46760 * 179.97438 * 24 23 22 43 43 H 1.08994 * 109.46927 * 299.99777 * 24 23 22 44 44 H 1.08995 * 109.46997 * 59.99951 * 25 23 22 45 45 H 1.08998 * 109.46822 * 180.02562 * 25 23 22 46 46 H 1.09002 * 109.47131 * 300.00001 * 25 23 22 47 47 H 1.09003 * 109.47340 * 60.00048 * 26 23 22 48 48 H 1.09006 * 109.47448 * 180.02562 * 26 23 22 49 49 H 1.09006 * 109.47359 * 300.00268 * 26 23 22 50 50 H 1.08996 * 109.58843 * 293.82613 * 27 19 18 51 51 H 1.08997 * 109.70452 * 173.47042 * 27 19 18 52 52 H 1.09003 * 109.49132 * 301.33896 * 28 16 14 53 53 H 1.08999 * 109.49541 * 61.39922 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9435 0.8305 -2.6034 8 14 2.3225 -1.1191 -4.0081 9 1 1.8268 -0.4194 -5.2205 10 1 3.8074 -1.1185 -4.0079 11 1 1.8280 -2.5194 -4.0085 12 7 2.0184 -0.6907 1.1961 13 6 1.7828 -2.1274 1.3598 14 6 2.6845 -0.0045 2.1457 15 8 3.1571 -0.5892 3.0973 16 6 2.8420 1.4894 2.0251 17 6 3.9574 1.8054 1.0260 18 6 4.0913 3.3245 0.8800 19 7 4.2901 3.9119 2.2120 20 6 5.3385 4.7231 2.4553 21 8 5.4916 5.2031 3.5611 22 8 6.2163 5.0016 1.4731 23 6 7.3215 5.8822 1.8070 24 6 8.1486 5.2581 2.9328 25 6 8.2055 6.0811 0.5741 26 6 6.7748 7.2355 2.2657 27 6 3.3238 3.5987 3.2736 28 6 3.1985 2.0766 3.3927 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.7089 1.1617 -3.4843 33 1 2.6339 -2.6824 0.9656 34 1 1.6581 -2.3567 2.4181 35 1 0.8810 -2.4117 0.8177 36 1 1.9067 1.9261 1.6751 37 1 4.8982 1.3904 1.3877 38 1 3.7140 1.3670 0.0582 39 1 3.1834 3.7302 0.4335 40 1 4.9465 3.5588 0.2460 41 1 8.5381 4.2940 2.6059 42 1 8.9785 5.9190 3.1831 43 1 7.5187 5.1167 3.8110 44 1 7.6160 6.5258 -0.2276 45 1 9.0354 6.7418 0.8248 46 1 8.5950 5.1171 0.2469 47 1 6.1448 7.0941 3.1440 48 1 7.6045 7.8967 2.5160 49 1 6.1855 7.6801 1.4637 50 1 2.3534 4.0266 3.0223 51 1 3.6712 4.0120 4.2204 52 1 2.4148 1.8310 4.1094 53 1 4.1461 1.6585 3.7323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491171428.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -137.205640 kcal Electronic energy + Delta-G solvation = -32084.483609 eV Core-core repulsion = 27955.571667 eV Total energy + Delta-G solvation = -4128.911942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.00383 -41.14389 -39.19636 -37.49499 -37.32030 -35.17991 -34.51375 -33.80582 -32.14898 -30.96957 -28.68339 -28.32808 -28.26324 -27.22220 -26.44762 -24.46230 -23.68370 -22.93681 -21.58593 -20.32487 -19.85022 -18.95602 -18.29783 -17.97593 -17.67644 -17.23381 -16.86886 -16.31038 -16.23078 -16.03593 -15.58886 -15.45677 -15.00918 -14.87253 -14.71305 -14.47349 -14.40410 -14.24179 -13.71678 -13.47217 -13.36511 -13.26432 -13.08463 -13.07821 -12.88248 -12.85026 -12.83231 -12.82253 -12.70111 -12.47537 -12.42601 -12.33054 -12.24153 -12.12246 -11.94728 -11.75906 -11.61320 -11.35403 -11.14179 -11.02360 -10.62421 -10.44492 -9.78034 -9.35367 -8.10822 -6.23582 1.15654 1.45848 1.48965 1.53890 1.72496 1.77021 2.34333 2.50730 2.81257 3.18580 3.58254 3.73925 3.76924 3.80720 3.83850 3.98342 4.03300 4.18638 4.30191 4.36008 4.50088 4.56423 4.64665 4.65942 4.67366 4.69877 4.71926 4.76920 4.78974 4.79666 4.83291 4.86958 4.90680 4.95449 5.00236 5.01092 5.06550 5.14120 5.19438 5.26797 5.31527 5.35243 5.43508 5.46821 5.52003 5.61948 5.79213 6.00022 6.25195 6.30950 6.70989 6.87686 7.27623 7.32898 7.49391 8.92048 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.003329 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.212966 B = 8407.752995 C = 9794.699198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.256 3.744 3 H 0.059 0.941 4 C -0.542 4.542 5 H 0.049 0.951 6 C 0.037 3.963 7 N -0.901 5.901 8 Si 0.945 3.055 9 H -0.283 1.283 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.597 5.597 13 C 0.099 3.901 14 C 0.508 3.492 15 O -0.599 6.599 16 C -0.096 4.096 17 C -0.117 4.117 18 C 0.125 3.875 19 N -0.594 5.594 20 C 0.650 3.350 21 O -0.591 6.591 22 O -0.369 6.369 23 C 0.122 3.878 24 C -0.179 4.179 25 C -0.136 4.136 26 C -0.177 4.177 27 C 0.133 3.867 28 C -0.103 4.103 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.266 0.734 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.091 0.909 49 H 0.061 0.939 50 H 0.095 0.905 51 H 0.097 0.903 52 H 0.088 0.912 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.974 11.261 5.664 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.155 3.845 3 H 0.076 0.924 4 C -0.580 4.580 5 H 0.067 0.933 6 C -0.165 4.165 7 N -0.540 5.540 8 Si 0.771 3.229 9 H -0.208 1.208 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.326 5.326 13 C -0.044 4.044 14 C 0.297 3.703 15 O -0.482 6.482 16 C -0.118 4.118 17 C -0.156 4.156 18 C 0.002 3.998 19 N -0.334 5.334 20 C 0.406 3.594 21 O -0.483 6.483 22 O -0.283 6.283 23 C 0.086 3.914 24 C -0.236 4.236 25 C -0.193 4.193 26 C -0.234 4.234 27 C 0.012 3.988 28 C -0.142 4.142 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.122 0.878 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.113 0.887 51 H 0.115 0.885 52 H 0.107 0.893 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.224 11.255 6.279 15.288 hybrid contribution 0.098 -0.984 -0.971 1.386 sum 8.322 10.272 5.308 14.245 Atomic orbital electron populations 1.22016 0.97812 0.99756 1.00702 1.19002 0.91537 0.93442 0.80484 0.92370 1.21431 1.32109 1.13237 0.91253 0.93292 1.25349 0.94915 0.95468 1.00755 1.69907 1.36445 1.23108 1.24511 0.85822 0.78629 0.78816 0.79596 1.20797 1.20293 1.20332 1.48349 1.53874 1.09492 1.20932 1.21365 1.01017 0.81213 1.00827 1.20996 0.77249 0.90687 0.81387 1.90574 1.50944 1.72108 1.34596 1.21242 1.01381 0.91004 0.98130 1.21829 0.97367 0.96721 0.99689 1.21694 1.03988 0.91463 0.82621 1.47147 1.24789 1.47697 1.13769 1.18092 0.79984 0.78912 0.82435 1.90852 1.76645 1.56678 1.24107 1.86330 1.37012 1.64881 1.40111 1.22433 0.83339 0.88325 0.97312 1.22466 1.00807 1.01559 0.98782 1.21886 0.98821 1.03452 0.95165 1.22451 1.03000 0.95516 1.02435 1.21712 0.91909 0.94369 0.90801 1.21674 1.02717 0.94507 0.95288 0.95058 0.95163 0.90509 0.92460 0.94180 0.92019 0.90650 0.87780 0.92590 0.89789 0.89449 0.88358 0.92564 0.88867 0.91925 0.91225 0.87760 0.91668 0.91823 0.88974 0.92011 0.88727 0.88486 0.89324 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.05 71.98 0.65 -5.38 16 2 C 0.26 11.06 1.88 44.25 0.08 11.15 16 3 H 0.06 2.53 4.41 -2.39 -0.01 2.52 16 4 C -0.54 -26.15 8.30 25.60 0.21 -25.94 16 5 H 0.05 2.44 7.37 -2.91 -0.02 2.42 16 6 C 0.04 1.77 5.30 84.65 0.45 2.22 16 7 N -0.90 -44.47 11.32 21.45 0.24 -44.23 16 8 Si 0.94 39.59 29.54 68.60 2.03 41.62 16 9 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 N -0.60 -24.33 2.75 -826.82 -2.28 -26.61 16 13 C 0.10 3.74 9.32 127.77 1.19 4.93 16 14 C 0.51 20.11 6.85 87.66 0.60 20.71 16 15 O -0.60 -26.57 15.72 -3.04 -0.05 -26.62 16 16 C -0.10 -3.11 1.62 -11.51 -0.02 -3.13 16 17 C -0.12 -3.74 4.99 30.67 0.15 -3.59 16 18 C 0.12 3.36 6.45 86.36 0.56 3.91 16 19 N -0.59 -16.26 2.97 -949.23 -2.82 -19.09 16 20 C 0.65 19.09 7.74 129.79 1.00 20.09 16 21 O -0.59 -18.96 11.30 19.80 0.22 -18.74 16 22 O -0.37 -9.85 8.53 -55.52 -0.47 -10.32 16 23 C 0.12 2.55 1.13 -10.79 -0.01 2.54 16 24 C -0.18 -3.73 8.37 71.98 0.60 -3.12 16 25 C -0.14 -2.04 8.85 71.98 0.64 -1.40 16 26 C -0.18 -3.45 8.37 71.98 0.60 -2.84 16 27 C 0.13 3.29 6.43 86.36 0.56 3.85 16 28 C -0.10 -2.93 4.79 30.67 0.15 -2.79 16 29 H 0.03 1.28 6.95 -2.38 -0.02 1.26 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 3.53 6.07 -2.39 -0.01 3.52 16 32 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 33 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 34 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 35 H 0.07 2.73 6.79 -2.39 -0.02 2.71 16 36 H 0.10 3.22 7.06 -2.39 -0.02 3.21 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 3.07 6.40 -2.39 -0.02 3.06 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.10 2.56 6.93 -2.38 -0.02 2.55 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 1.65 5.88 -2.39 -0.01 1.63 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 48 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 49 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 50 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.10 2.44 7.01 -2.39 -0.02 2.42 16 52 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 53 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 Total: -1.00 -58.98 403.24 5.18 -53.81 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.89 Total: 28.96 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 7.41 Total: 21.21 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -4.86 Total: -89.92 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -0.30 Total: -55.68 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -58.98 5.18 -53.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491171428.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.398 kcal (2) G-P(sol) polarization free energy of solvation -58.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds