Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46982 * 2 1 4 4 C 1.50696 * 109.47122 * 119.99683 * 2 1 3 5 5 H 1.08006 * 119.99524 * 119.99701 * 4 2 1 6 6 C 1.37874 * 120.00254 * 300.00147 * 4 2 1 7 7 N 1.31516 * 119.99981 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00079 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46884 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47092 * 119.99724 * 8 6 4 11 11 H 1.48500 * 109.46976 * 239.99655 * 8 6 4 12 12 N 1.46501 * 109.46720 * 239.99753 * 2 1 3 13 13 C 1.46493 * 120.00413 * 294.28321 * 12 2 1 14 14 C 1.34780 * 119.99623 * 114.29110 * 12 2 1 15 15 O 1.21282 * 119.99882 * 183.79662 * 14 12 2 16 16 C 1.50700 * 120.00053 * 3.78967 * 14 12 2 17 17 C 1.53039 * 109.45674 * 190.57342 * 16 14 12 18 18 C 1.53190 * 109.31215 * 178.61568 * 17 16 14 19 19 N 1.46928 * 108.89440 * 54.56532 * 18 17 16 20 20 C 1.34772 * 120.63290 * 126.46446 * 19 18 17 21 21 O 1.21515 * 119.99930 * 359.97438 * 20 19 18 22 22 O 1.34631 * 120.00050 * 180.02562 * 20 19 18 23 23 C 1.45207 * 117.00347 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47106 * 59.99628 * 23 22 20 25 25 C 1.52996 * 109.47421 * 179.97438 * 23 22 20 26 26 C 1.53001 * 109.46821 * 300.00123 * 23 22 20 27 27 C 1.46961 * 118.71479 * 306.64362 * 19 18 17 28 28 C 1.53041 * 109.45887 * 70.50969 * 16 14 12 29 29 H 1.09002 * 109.46947 * 300.00225 * 1 2 3 30 30 H 1.09000 * 109.46834 * 59.99996 * 1 2 3 31 31 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99956 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47622 * 265.00857 * 13 12 2 34 34 H 1.09003 * 109.46851 * 25.01045 * 13 12 2 35 35 H 1.08996 * 109.47218 * 145.00189 * 13 12 2 36 36 H 1.09000 * 109.46193 * 310.54383 * 16 14 12 37 37 H 1.09003 * 109.50093 * 58.66310 * 17 16 14 38 38 H 1.09000 * 109.50281 * 298.56983 * 17 16 14 39 39 H 1.09003 * 109.59096 * 174.42259 * 18 17 16 40 40 H 1.09003 * 109.59015 * 294.70430 * 18 17 16 41 41 H 1.09001 * 109.46814 * 59.99896 * 24 23 22 42 42 H 1.08994 * 109.47345 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.47252 * 300.00843 * 24 23 22 44 44 H 1.08998 * 109.47338 * 59.99750 * 25 23 22 45 45 H 1.08994 * 109.47034 * 180.02562 * 25 23 22 46 46 H 1.09007 * 109.47123 * 300.00000 * 25 23 22 47 47 H 1.09000 * 109.47637 * 59.99563 * 26 23 22 48 48 H 1.09002 * 109.47227 * 179.97438 * 26 23 22 49 49 H 1.08998 * 109.46848 * 299.99582 * 26 23 22 50 50 H 1.09008 * 109.46668 * 293.57419 * 27 19 18 51 51 H 1.08994 * 109.71648 * 173.28353 * 27 19 18 52 52 H 1.08997 * 109.49593 * 301.33584 * 28 16 14 53 53 H 1.08999 * 109.49599 * 61.43094 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1455 -2.2876 3.6038 10 1 3.1467 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 1.7706 -2.1244 -1.3666 14 6 2.6956 -0.0070 -2.1398 15 8 3.0398 -0.5626 -3.1614 16 6 3.0250 1.4479 -1.9254 17 6 3.5518 2.0489 -3.2306 18 6 3.8530 3.5358 -3.0183 19 7 4.7668 3.6780 -1.8766 20 6 5.9207 4.3630 -2.0017 21 8 6.2139 4.8699 -3.0665 22 8 6.7489 4.4849 -0.9474 23 6 7.9743 5.2358 -1.1549 24 6 7.6308 6.6663 -1.5754 25 6 8.7801 5.2666 0.1453 26 6 8.8028 4.5664 -2.2533 27 6 4.4001 3.0553 -0.5969 28 6 4.0928 1.5737 -0.8363 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7090 1.1615 3.4844 33 1 2.6320 -2.6873 -1.0074 34 1 0.8863 -2.4105 -0.7971 35 1 1.6087 -2.3422 -2.4223 36 1 2.1265 1.9820 -1.6164 37 1 2.7999 1.9379 -4.0119 38 1 4.4643 1.5316 -3.5272 39 1 4.3205 3.9455 -3.9137 40 1 2.9257 4.0708 -2.8130 41 1 7.0405 7.1431 -0.7929 42 1 8.5506 7.2298 -1.7316 43 1 7.0565 6.6447 -2.5016 44 1 9.0248 4.2476 0.4453 45 1 9.6996 5.8306 -0.0104 46 1 8.1896 5.7437 0.9276 47 1 8.2285 4.5449 -3.1795 48 1 9.7224 5.1304 -2.4094 49 1 9.0475 3.5474 -1.9537 50 1 3.5177 3.5506 -0.1916 51 1 5.2269 3.1478 0.1072 52 1 3.7259 1.1245 0.0865 53 1 5.0002 1.0609 -1.1555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491171429.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -136.668225 kcal Electronic energy + Delta-G solvation = -32159.182059 eV Core-core repulsion = 28030.293421 eV Total energy + Delta-G solvation = -4128.888638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00236 -41.14804 -39.18755 -37.48390 -37.33695 -35.18004 -34.50739 -33.80418 -32.12815 -30.97059 -28.67298 -28.32939 -28.26543 -27.22466 -26.44378 -24.43282 -23.67819 -22.93951 -21.59100 -20.32639 -19.84024 -18.94424 -18.30102 -17.94617 -17.67790 -17.23536 -16.87440 -16.35430 -16.23741 -15.98567 -15.58075 -15.45690 -15.00875 -14.84769 -14.67980 -14.49239 -14.42245 -14.25005 -13.68254 -13.49603 -13.35570 -13.26855 -13.08353 -13.07361 -12.86288 -12.84636 -12.83385 -12.82966 -12.69161 -12.45266 -12.41305 -12.32459 -12.24192 -12.12771 -11.92877 -11.75777 -11.58203 -11.35488 -11.13279 -11.02130 -10.61671 -10.44424 -9.77547 -9.34726 -8.10253 -6.22763 1.15854 1.43911 1.50108 1.57177 1.72489 1.77627 2.35117 2.51134 2.81571 3.19337 3.59085 3.75288 3.77232 3.80671 3.83703 3.98210 4.04112 4.18986 4.30761 4.36506 4.50685 4.56949 4.64477 4.66200 4.68426 4.70098 4.73229 4.77669 4.79417 4.79821 4.84294 4.87224 4.90515 4.95948 5.00550 5.02460 5.07737 5.14003 5.21519 5.27726 5.31373 5.35283 5.43376 5.47233 5.52713 5.62288 5.80062 5.99246 6.25522 6.31217 6.71801 6.88679 7.27759 7.33342 7.50285 8.93009 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.003480 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.398484 B = 8044.974340 C = 9547.180920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.050 0.950 6 C 0.037 3.963 7 N -0.902 5.902 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.283 1.283 12 N -0.597 5.597 13 C 0.098 3.902 14 C 0.507 3.493 15 O -0.599 6.599 16 C -0.096 4.096 17 C -0.102 4.102 18 C 0.133 3.867 19 N -0.594 5.594 20 C 0.650 3.350 21 O -0.591 6.591 22 O -0.369 6.369 23 C 0.122 3.878 24 C -0.177 4.177 25 C -0.136 4.136 26 C -0.179 4.179 27 C 0.124 3.876 28 C -0.120 4.120 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.086 0.914 51 H 0.097 0.903 52 H 0.089 0.911 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 10.032 -4.340 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.155 3.845 3 H 0.077 0.923 4 C -0.575 4.575 5 H 0.068 0.932 6 C -0.165 4.165 7 N -0.541 5.541 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.209 1.209 12 N -0.326 5.326 13 C -0.045 4.045 14 C 0.297 3.703 15 O -0.482 6.482 16 C -0.117 4.117 17 C -0.141 4.141 18 C 0.012 3.988 19 N -0.334 5.334 20 C 0.406 3.594 21 O -0.483 6.483 22 O -0.284 6.284 23 C 0.086 3.914 24 C -0.234 4.234 25 C -0.193 4.193 26 C -0.236 4.236 27 C 0.002 3.998 28 C -0.158 4.158 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.123 0.877 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.111 0.889 49 H 0.074 0.926 50 H 0.104 0.896 51 H 0.115 0.885 52 H 0.108 0.892 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.728 10.034 -4.975 14.835 hybrid contribution 0.009 -0.928 0.943 1.323 sum 9.737 9.106 -4.033 13.928 Atomic orbital electron populations 1.22025 0.97943 0.99755 1.00609 1.19026 0.91396 0.93482 0.80614 0.92324 1.21464 1.31847 1.13090 0.91085 0.93185 1.25344 0.94928 0.95445 1.00758 1.69924 1.36585 1.23205 1.24358 0.85719 0.78085 0.78762 0.80302 1.20160 1.20553 1.20945 1.48328 1.53258 1.09710 1.21314 1.21367 1.01018 0.81231 1.00873 1.20994 0.77145 0.89944 0.82257 1.90573 1.56238 1.72102 1.29286 1.21230 1.00700 0.91950 0.97864 1.21657 1.01740 0.94690 0.95982 1.21716 0.92991 0.95725 0.88386 1.47164 1.18468 1.53650 1.14113 1.18090 0.80733 0.78425 0.82183 1.90851 1.75728 1.53085 1.28648 1.86329 1.32852 1.70913 1.38262 1.22431 0.80175 0.90736 0.98065 1.22451 1.03776 0.94585 1.02593 1.21885 0.99749 1.03682 0.94020 1.22467 1.01022 1.01051 0.99072 1.21689 1.02484 0.91544 0.84048 1.21880 0.97619 0.97132 0.99189 0.90461 0.95418 0.95011 0.92508 0.94028 0.90623 0.92122 0.87721 0.89322 0.92661 0.88540 0.88764 0.92026 0.88955 0.91824 0.91670 0.87735 0.91261 0.91919 0.88854 0.92558 0.89579 0.88478 0.89222 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 9.04 71.98 0.65 -5.43 16 2 C 0.26 10.96 1.71 44.25 0.08 11.04 16 3 H 0.06 2.54 4.47 -2.39 -0.01 2.53 16 4 C -0.54 -25.49 7.97 25.60 0.20 -25.28 16 5 H 0.05 2.47 7.44 -2.91 -0.02 2.45 16 6 C 0.04 1.75 5.30 84.65 0.45 2.20 16 7 N -0.90 -44.22 11.32 21.45 0.24 -43.98 16 8 Si 0.94 39.29 29.54 68.60 2.03 41.32 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.60 -24.20 2.75 -826.81 -2.28 -26.47 16 13 C 0.10 3.70 9.35 127.77 1.20 4.89 16 14 C 0.51 20.05 6.93 87.66 0.61 20.66 16 15 O -0.60 -26.40 15.64 -3.04 -0.05 -26.45 16 16 C -0.10 -3.12 1.62 -11.51 -0.02 -3.14 16 17 C -0.10 -2.93 4.69 30.67 0.14 -2.78 16 18 C 0.13 3.33 6.43 86.36 0.56 3.88 16 19 N -0.59 -16.47 2.98 -949.16 -2.83 -19.30 16 20 C 0.65 19.30 7.74 129.79 1.00 20.31 16 21 O -0.59 -19.13 11.29 19.79 0.22 -18.91 16 22 O -0.37 -10.00 8.53 -55.40 -0.47 -10.47 16 23 C 0.12 2.59 1.13 -10.79 -0.01 2.58 16 24 C -0.18 -3.49 8.37 71.98 0.60 -2.89 16 25 C -0.14 -2.08 8.85 71.98 0.64 -1.45 16 26 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 27 C 0.12 3.42 6.44 86.36 0.56 3.98 16 28 C -0.12 -3.85 4.97 30.67 0.15 -3.70 16 29 H 0.08 3.56 6.07 -2.39 -0.01 3.55 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.03 1.30 6.93 -2.39 -0.02 1.28 16 32 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.73 6.76 -2.39 -0.02 2.72 16 35 H 0.06 2.19 7.53 -2.39 -0.02 2.17 16 36 H 0.10 3.25 7.14 -2.39 -0.02 3.23 16 37 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 39 H 0.10 2.46 7.00 -2.39 -0.02 2.44 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.59 5.88 -2.38 -0.01 1.58 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 47 H 0.06 1.66 5.88 -2.39 -0.01 1.65 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 51 H 0.10 2.60 6.94 -2.39 -0.02 2.59 16 52 H 0.09 3.34 5.84 -2.39 -0.01 3.32 16 53 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -58.30 402.38 5.16 -53.14 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.89 Total: 29.41 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 7.41 Total: 21.70 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -4.86 Total: -89.75 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -0.30 Total: -55.82 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -58.30 5.16 -53.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491171429.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.528 kcal (2) G-P(sol) polarization free energy of solvation -58.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds