Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 C 1.34776 * 120.00710 * 240.00300 * 12 2 1 15 15 O 1.21283 * 119.99682 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00475 * 180.02562 * 14 12 2 17 17 H 1.08994 * 109.46908 * 299.99876 * 16 14 12 18 18 C 1.53003 * 109.46965 * 59.99867 * 16 14 12 19 19 C 1.53003 * 109.47230 * 179.97438 * 16 14 12 20 20 C 1.53941 * 113.74133 * 158.74158 * 19 16 14 21 21 N 1.47816 * 86.03653 * 222.08670 * 20 19 16 22 22 C 1.34775 * 134.45694 * 204.64527 * 21 20 19 23 23 O 1.21505 * 120.00156 * 179.86864 * 22 21 20 24 24 O 1.34640 * 119.99730 * 359.86481 * 22 21 20 25 25 C 1.45209 * 116.99691 * 180.02562 * 24 22 21 26 26 C 1.53000 * 109.47248 * 59.99805 * 25 24 22 27 27 C 1.53001 * 109.46785 * 180.02562 * 25 24 22 28 28 C 1.52999 * 109.46597 * 299.99667 * 25 24 22 29 29 C 1.47580 * 91.04878 * 24.54805 * 21 20 19 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 35 35 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 36 36 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 37 37 H 1.08995 * 109.46890 * 300.00043 * 18 16 14 38 38 H 1.09000 * 109.46884 * 60.00394 * 18 16 14 39 39 H 1.09001 * 109.46855 * 180.02562 * 18 16 14 40 40 H 1.08998 * 112.94515 * 290.33909 * 19 16 14 41 41 H 1.09008 * 113.77211 * 336.34818 * 20 19 16 42 42 H 1.08998 * 113.77472 * 107.74585 * 20 19 16 43 43 H 1.08997 * 109.46902 * 60.00153 * 26 25 24 44 44 H 1.08998 * 109.46855 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.47081 * 300.00021 * 26 25 24 46 46 H 1.08997 * 109.47237 * 60.00141 * 27 25 24 47 47 H 1.09002 * 109.46613 * 180.02562 * 27 25 24 48 48 H 1.09001 * 109.47109 * 299.99348 * 27 25 24 49 49 H 1.09000 * 109.46995 * 60.00717 * 28 25 24 50 50 H 1.09002 * 109.46677 * 179.97438 * 28 25 24 51 51 H 1.08997 * 109.47781 * 300.00077 * 28 25 24 52 52 H 1.09002 * 113.77025 * 221.14854 * 29 21 20 53 53 H 1.09003 * 113.86934 * 89.77157 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8913 16 6 3.2959 -0.7461 3.3136 17 1 2.4484 -1.0890 3.9070 18 6 4.1462 -1.9478 2.8967 19 6 4.1463 0.2155 4.1462 20 6 4.2804 -0.1961 5.6235 21 7 4.0858 1.2360 5.9337 22 6 4.4263 2.0330 6.9658 23 8 4.1269 3.2105 6.9486 24 8 5.0981 1.5244 8.0159 25 6 5.4312 2.4410 9.0918 26 6 4.1461 3.0332 9.6736 27 6 6.1880 1.6876 10.1875 28 6 6.3113 3.5679 8.5474 29 6 3.3715 1.4429 4.6589 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 0.7089 1.1612 -3.4844 34 1 2.4157 -2.7377 0.9718 35 1 1.6238 -2.2851 2.5002 36 1 0.6904 -2.3002 0.9847 37 1 3.5407 -2.6329 2.3034 38 1 4.9938 -1.6048 2.3033 39 1 4.5095 -2.4620 3.7865 40 1 5.0958 0.4628 3.6716 41 1 3.4715 -0.8359 5.9765 42 1 5.2685 -0.5735 5.8866 43 1 3.5192 2.2302 10.0614 44 1 4.3962 3.7215 10.4809 45 1 3.6074 3.5700 8.8928 46 1 7.1036 1.2661 9.7727 47 1 6.4377 2.3755 10.9953 48 1 5.5614 0.8844 10.5754 49 1 5.7725 4.1047 7.7666 50 1 6.5610 4.2562 9.3549 51 1 7.2269 3.1461 8.1329 52 1 3.6353 2.3718 4.1532 53 1 2.2949 1.2863 4.7261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495488700.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -98.576991 kcal Electronic energy + Delta-G solvation = -31012.207381 eV Core-core repulsion = 26884.970503 eV Total energy + Delta-G solvation = -4127.236878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.02568 -41.18527 -39.82730 -37.68105 -37.02406 -35.31624 -34.98950 -34.02388 -31.21989 -29.67189 -28.38603 -28.29703 -27.68890 -27.32275 -27.24233 -25.39684 -23.83954 -22.40290 -21.32923 -20.28635 -19.81850 -18.77019 -18.50767 -17.86847 -17.59295 -17.47660 -17.07740 -16.39531 -16.14582 -16.03018 -15.72307 -15.28347 -15.07713 -14.85960 -14.66030 -14.32834 -14.06372 -13.77662 -13.61418 -13.43911 -13.35448 -13.32784 -13.10078 -13.00752 -12.92191 -12.89157 -12.86790 -12.76658 -12.63392 -12.58841 -12.46562 -12.30856 -12.18088 -12.13686 -12.10509 -11.87661 -11.61779 -11.40993 -11.13495 -11.05124 -10.55494 -10.29284 -9.86165 -9.22634 -8.11924 -6.28182 0.94355 1.41675 1.43554 1.52974 1.72551 1.92699 2.35307 2.52760 2.75203 3.15892 3.31976 3.73125 3.74437 3.79587 3.81284 3.94084 4.00821 4.19878 4.27232 4.40691 4.44595 4.52998 4.58575 4.59666 4.62761 4.63066 4.74270 4.74764 4.74934 4.81826 4.85394 4.87622 4.91193 4.91896 5.00241 5.05356 5.10135 5.12612 5.17540 5.25997 5.27504 5.32877 5.46823 5.47733 5.52516 5.68157 5.73080 6.08784 6.20577 6.60552 6.81098 6.94956 7.21698 7.37556 7.58349 8.91902 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.002155 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.649310 B =12988.075712 C =13280.351922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.006 0.994 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.290 1.290 11 H -0.269 1.269 12 N -0.600 5.600 13 C 0.079 3.921 14 C 0.494 3.506 15 O -0.602 6.602 16 C -0.085 4.085 17 H 0.131 0.869 18 C -0.150 4.150 19 C -0.089 4.089 20 C 0.128 3.872 21 N -0.641 5.641 22 C 0.664 3.336 23 O -0.603 6.603 24 O -0.362 6.362 25 C 0.121 3.879 26 C -0.179 4.179 27 C -0.132 4.132 28 C -0.181 4.181 29 C 0.141 3.859 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.093 0.907 51 H 0.061 0.939 52 H 0.055 0.945 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 -8.597 24.986 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.024 0.976 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.216 1.216 11 H -0.194 1.194 12 N -0.330 5.330 13 C -0.062 4.062 14 C 0.283 3.717 15 O -0.484 6.484 16 C -0.107 4.107 17 H 0.149 0.851 18 C -0.207 4.207 19 C -0.109 4.109 20 C 0.007 3.993 21 N -0.383 5.383 22 C 0.420 3.580 23 O -0.495 6.495 24 O -0.277 6.277 25 C 0.085 3.915 26 C -0.236 4.236 27 C -0.189 4.189 28 C -0.238 4.238 29 C 0.020 3.980 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.121 0.879 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.112 0.888 51 H 0.080 0.920 52 H 0.074 0.926 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.042 -7.407 24.988 27.275 hybrid contribution -0.083 0.691 -1.582 1.728 sum 7.959 -6.716 23.406 25.618 Atomic orbital electron populations 1.21879 0.97434 1.00070 0.99783 1.18468 0.91407 0.92168 0.82081 0.97598 1.21586 1.31508 1.12857 0.91092 0.91978 1.25755 0.95259 0.95678 1.02119 1.70031 1.37577 1.24027 1.24244 0.85480 0.78908 0.78203 0.78561 1.19288 1.21556 1.19403 1.48190 1.49147 1.13380 1.22303 1.22009 1.01183 0.80528 1.02521 1.21458 0.77991 0.86649 0.85595 1.90644 1.59836 1.19717 1.78204 1.21307 1.00318 0.96353 0.92713 0.85101 1.22027 0.99371 0.95681 1.03658 1.22805 0.99318 0.93841 0.94913 1.23593 1.04986 0.80781 0.89936 1.49044 1.58615 1.12711 1.17931 1.17779 0.77395 0.83208 0.79586 1.90884 1.61108 1.16673 1.80873 1.86311 1.69530 1.43618 1.28207 1.22474 0.95686 0.89021 0.84292 1.22461 0.97021 1.02046 1.02075 1.21864 1.00022 1.01274 0.95717 1.22479 0.99469 0.98790 1.03040 1.23165 0.97177 0.99892 0.77775 0.93264 0.91766 0.96180 0.92835 0.92100 0.88000 0.91750 0.90143 0.93936 0.87739 0.88790 0.86144 0.87479 0.91676 0.88884 0.92735 0.91119 0.87863 0.90894 0.92789 0.88843 0.91977 0.92615 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.95 71.98 0.64 -5.68 16 2 C 0.26 13.29 2.64 44.24 0.12 13.41 16 3 H 0.01 0.37 6.90 -2.39 -0.02 0.36 16 4 C -0.53 -28.36 8.37 25.60 0.21 -28.15 16 5 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -53.26 11.32 21.45 0.24 -53.01 16 8 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.60 -23.49 2.75 -826.79 -2.28 -25.77 16 13 C 0.08 2.18 8.04 127.77 1.03 3.21 16 14 C 0.49 18.37 6.89 87.66 0.60 18.97 16 15 O -0.60 -28.73 14.37 -3.04 -0.04 -28.78 16 16 C -0.09 -1.90 1.66 -11.54 -0.02 -1.92 16 17 H 0.13 2.03 7.24 -2.39 -0.02 2.02 16 18 C -0.15 -2.60 8.81 71.98 0.63 -1.97 16 19 C -0.09 -2.04 2.85 -10.14 -0.03 -2.07 16 20 C 0.13 2.08 8.43 86.44 0.73 2.81 16 21 N -0.64 -16.85 3.61 -966.39 -3.49 -20.34 16 22 C 0.66 19.90 8.22 129.79 1.07 20.97 16 23 O -0.60 -21.91 12.61 19.83 0.25 -21.66 16 24 O -0.36 -8.87 9.87 -55.49 -0.55 -9.41 16 25 C 0.12 2.35 1.13 -10.79 -0.01 2.33 16 26 C -0.18 -3.45 8.37 71.98 0.60 -2.84 16 27 C -0.13 -1.50 8.85 71.98 0.64 -0.86 16 28 C -0.18 -3.64 8.37 71.98 0.60 -3.04 16 29 C 0.14 4.09 7.05 86.48 0.61 4.70 16 30 H 0.05 2.09 6.66 -2.39 -0.02 2.08 16 31 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 32 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.06 1.58 6.95 -2.39 -0.02 1.57 16 35 H 0.10 1.81 6.01 -2.39 -0.01 1.80 16 36 H 0.06 1.86 6.43 -2.39 -0.02 1.85 16 37 H 0.08 1.37 4.53 -2.39 -0.01 1.36 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.12 1.25 7.99 -2.38 -0.02 1.23 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 1.45 5.88 -2.39 -0.01 1.44 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 49 H 0.05 1.49 5.88 -2.39 -0.01 1.48 16 50 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 51 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.06 2.02 8.09 -2.39 -0.02 2.00 16 53 H 0.09 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -78.42 409.72 4.93 -73.49 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.89 Total: 19.68 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.88 Total: 20.94 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -5.52 Total: -99.12 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -0.34 Total: -59.85 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -78.42 4.93 -73.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495488700.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.089 kcal (2) G-P(sol) polarization free energy of solvation -78.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds