Wall clock time and date at job start Sat Apr 11 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46687 * 2 1 4 4 C 1.50699 * 109.47759 * 119.99888 * 2 1 3 5 5 H 1.07998 * 120.00236 * 119.99901 * 4 2 1 6 6 C 1.37881 * 119.99524 * 300.00561 * 4 2 1 7 7 N 1.31504 * 120.00621 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99439 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47059 * 90.00241 * 8 6 4 10 10 H 1.48501 * 109.47135 * 209.99972 * 8 6 4 11 11 H 1.48494 * 109.47464 * 329.99713 * 8 6 4 12 12 N 1.46501 * 109.47146 * 240.00156 * 2 1 3 13 13 C 1.46497 * 120.00077 * 299.26328 * 12 2 1 14 14 C 1.34781 * 119.99952 * 119.54278 * 12 2 1 15 15 O 1.21276 * 120.00045 * 175.10469 * 14 12 2 16 16 C 1.50701 * 120.00103 * 355.10361 * 14 12 2 17 17 H 1.09008 * 109.47025 * 311.27881 * 16 14 12 18 18 C 1.52999 * 109.47314 * 71.27494 * 16 14 12 19 19 C 1.52995 * 109.47460 * 191.27888 * 16 14 12 20 20 C 1.53939 * 113.74751 * 158.73936 * 19 16 14 21 21 N 1.47811 * 86.04100 * 222.08611 * 20 19 16 22 22 C 1.34775 * 134.45894 * 204.64498 * 21 20 19 23 23 O 1.21508 * 120.00032 * 179.86012 * 22 21 20 24 24 O 1.34638 * 119.99687 * 359.86515 * 22 21 20 25 25 C 1.45207 * 116.99748 * 179.97438 * 24 22 21 26 26 C 1.52996 * 109.46958 * 59.99764 * 25 24 22 27 27 C 1.53002 * 109.46676 * 179.97438 * 25 24 22 28 28 C 1.52997 * 109.46845 * 299.99834 * 25 24 22 29 29 C 1.47578 * 91.04863 * 24.54553 * 21 20 19 30 30 H 1.08991 * 109.47456 * 60.00116 * 1 2 3 31 31 H 1.09001 * 109.46687 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47115 * 299.99478 * 1 2 3 33 33 H 0.97003 * 120.00577 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47203 * 264.99557 * 13 12 2 35 35 H 1.09005 * 109.46763 * 24.99575 * 13 12 2 36 36 H 1.09003 * 109.47079 * 144.98887 * 13 12 2 37 37 H 1.09008 * 109.47267 * 293.21445 * 18 16 14 38 38 H 1.09000 * 109.47053 * 53.21150 * 18 16 14 39 39 H 1.08993 * 109.47465 * 173.21401 * 18 16 14 40 40 H 1.09003 * 112.94448 * 290.33277 * 19 16 14 41 41 H 1.09009 * 113.76611 * 336.34758 * 20 19 16 42 42 H 1.08997 * 113.77233 * 107.73942 * 20 19 16 43 43 H 1.09003 * 109.46991 * 60.00109 * 26 25 24 44 44 H 1.08998 * 109.46913 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.47150 * 300.00220 * 26 25 24 46 46 H 1.08997 * 109.47224 * 60.00567 * 27 25 24 47 47 H 1.09008 * 109.46796 * 179.97438 * 27 25 24 48 48 H 1.08992 * 109.47486 * 299.99619 * 27 25 24 49 49 H 1.08991 * 109.47511 * 60.00189 * 28 25 24 50 50 H 1.09008 * 109.46939 * 180.02562 * 28 25 24 51 51 H 1.09001 * 109.47135 * 299.99399 * 28 25 24 52 52 H 1.09000 * 113.76950 * 221.15441 * 29 21 20 53 53 H 1.09000 * 113.86939 * 89.77168 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3216 -1.1202 4.0079 9 1 3.6298 -0.5456 4.4123 10 1 1.3434 -0.9493 5.1120 11 1 2.4862 -2.5661 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 1.6778 -2.0977 -1.4200 14 6 2.7856 -0.0329 -2.0880 15 8 3.2631 -0.6266 -3.0315 16 6 3.0500 1.4404 -1.9128 17 1 2.1093 1.9588 -1.7270 18 6 3.9919 1.6519 -0.7258 19 6 3.6968 1.9970 -3.1826 20 6 3.5444 3.5208 -3.3392 21 7 3.2605 3.2430 -4.7630 22 6 3.3718 3.9523 -5.9035 23 8 3.0559 3.4507 -6.9642 24 8 3.8331 5.2167 -5.8677 25 6 3.9270 5.9203 -7.1344 26 6 2.5397 6.0068 -7.7737 27 6 4.4666 7.3319 -6.8948 28 6 4.8731 5.1638 -8.0690 29 6 2.8088 1.8770 -4.4344 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 0.7095 1.1618 3.4844 34 1 2.4818 -2.7303 -1.0441 35 1 0.7526 -2.3356 -0.8949 36 1 1.5453 -2.2742 -2.4874 37 1 3.4847 1.3665 0.1959 38 1 4.8830 1.0377 -0.8552 39 1 4.2790 2.7020 -0.6724 40 1 4.7160 1.6404 -3.3318 41 1 2.6959 3.9357 -2.7949 42 1 4.4688 4.0742 -3.1741 43 1 1.8657 6.5457 -7.1078 44 1 2.6102 6.5354 -8.7244 45 1 2.1550 5.0014 -7.9442 46 1 5.4549 7.2706 -6.4392 47 1 4.5375 7.8599 -7.8458 48 1 3.7923 7.8705 -6.2292 49 1 4.4883 4.1585 -8.2395 50 1 4.9439 5.6923 -9.0198 51 1 5.8615 5.1023 -7.6135 52 1 3.1471 1.1203 -5.1422 53 1 1.7440 1.8060 -4.2125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495488702.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:27 Heat of formation + Delta-G solvation = -96.906505 kcal Electronic energy + Delta-G solvation = -31320.173625 eV Core-core repulsion = 27193.009185 eV Total energy + Delta-G solvation = -4127.164440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03072 -41.20844 -39.83770 -37.66199 -37.24714 -35.13606 -34.48907 -34.36275 -30.92940 -30.04488 -28.37206 -28.29404 -27.98871 -27.22355 -27.17222 -25.30252 -23.42971 -22.61628 -21.54453 -20.28536 -19.77134 -18.79610 -18.36959 -18.05050 -17.63513 -17.39560 -16.83488 -16.44394 -16.19707 -15.96662 -15.69544 -15.25633 -15.14385 -14.77673 -14.59697 -14.50771 -14.08738 -13.83118 -13.58223 -13.45843 -13.33057 -13.27378 -13.15708 -13.01445 -12.91318 -12.88900 -12.86396 -12.82074 -12.62612 -12.50190 -12.46644 -12.41970 -12.16267 -12.11735 -11.90317 -11.84276 -11.62271 -11.40031 -11.10074 -11.06940 -10.52161 -10.36690 -9.86909 -9.30227 -8.09057 -6.21431 0.94693 1.44754 1.49517 1.55658 1.72690 1.83717 2.36895 2.51861 2.74038 3.19944 3.30925 3.73940 3.75978 3.80429 3.82440 3.94906 4.00673 4.20560 4.27626 4.43783 4.43855 4.52289 4.57808 4.60988 4.62023 4.63909 4.69254 4.71922 4.75938 4.78598 4.82544 4.87942 4.91130 4.98996 5.00090 5.06382 5.07901 5.12773 5.13592 5.26835 5.28294 5.33408 5.41163 5.47424 5.58050 5.65143 5.84128 6.04535 6.28030 6.59467 6.74293 6.92771 7.21656 7.38699 7.52711 8.93547 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.002382 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.518615 B =11751.742164 C =12260.446075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.251 3.749 3 H 0.067 0.933 4 C -0.535 4.535 5 H 0.047 0.953 6 C 0.034 3.966 7 N -0.904 5.904 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.599 5.599 13 C 0.098 3.902 14 C 0.507 3.493 15 O -0.593 6.593 16 C -0.087 4.087 17 H 0.106 0.894 18 C -0.143 4.143 19 C -0.086 4.086 20 C 0.121 3.879 21 N -0.638 5.638 22 C 0.666 3.334 23 O -0.600 6.600 24 O -0.365 6.365 25 C 0.121 3.879 26 C -0.179 4.179 27 C -0.133 4.133 28 C -0.179 4.179 29 C 0.141 3.859 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.265 0.735 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.061 0.939 52 H 0.070 0.930 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 12.688 -12.614 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.573 4.573 5 H 0.065 0.935 6 C -0.167 4.167 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.328 5.328 13 C -0.045 4.045 14 C 0.296 3.704 15 O -0.475 6.475 16 C -0.109 4.109 17 H 0.124 0.876 18 C -0.201 4.201 19 C -0.105 4.105 20 C 0.000 4.000 21 N -0.380 5.380 22 C 0.423 3.577 23 O -0.492 6.492 24 O -0.280 6.280 25 C 0.085 3.915 26 C -0.236 4.236 27 C -0.190 4.190 28 C -0.236 4.236 29 C 0.020 3.980 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.123 0.877 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.112 0.888 51 H 0.080 0.920 52 H 0.089 0.911 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.990 12.530 -13.490 19.076 hybrid contribution -0.067 -1.080 0.937 1.432 sum 4.923 11.450 -12.553 17.690 Atomic orbital electron populations 1.22023 0.97996 0.99732 1.00646 1.19123 0.91452 0.93845 0.80541 0.91564 1.21459 1.31633 1.12960 0.91265 0.93500 1.25355 0.95017 0.95532 1.00789 1.69910 1.36679 1.23291 1.24373 0.85783 0.78192 0.78973 0.79999 1.20312 1.21018 1.20338 1.48310 1.49459 1.11939 1.23117 1.21361 1.00408 0.82138 1.00563 1.21002 0.77638 0.90430 0.81294 1.90592 1.52574 1.70609 1.33764 1.21194 1.01673 0.91469 0.96580 0.87578 1.21861 0.98337 1.03481 0.96396 1.22803 1.00375 0.95476 0.91874 1.23562 1.03567 0.95504 0.77352 1.48964 1.67075 1.16355 1.05622 1.17728 0.76612 0.80381 0.83021 1.90871 1.56794 1.72040 1.29467 1.86324 1.78820 1.24187 1.38624 1.22482 0.96739 0.92505 0.79807 1.22464 0.95632 1.03295 1.02216 1.21872 1.01866 0.90833 1.04440 1.22467 0.98892 1.01829 1.00432 1.23191 0.99523 0.80409 0.94850 0.95172 0.95033 0.90651 0.92537 0.94332 0.90757 0.92031 0.91567 0.93134 0.88932 0.87686 0.87342 0.87490 0.91973 0.88775 0.92494 0.91174 0.87733 0.91173 0.92502 0.88784 0.91987 0.91134 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.03 8.97 71.98 0.65 -5.39 16 2 C 0.25 10.64 1.85 44.24 0.08 10.73 16 3 H 0.07 2.80 4.07 -2.39 -0.01 2.79 16 4 C -0.53 -25.54 8.08 25.60 0.21 -25.33 16 5 H 0.05 2.34 7.62 -2.91 -0.02 2.32 16 6 C 0.03 1.64 5.30 84.66 0.45 2.09 16 7 N -0.90 -44.63 11.32 21.45 0.24 -44.39 16 8 Si 0.94 39.60 29.54 68.60 2.03 41.63 16 9 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.60 -23.58 2.75 -826.81 -2.28 -25.86 16 13 C 0.10 3.64 9.51 127.77 1.22 4.85 16 14 C 0.51 18.83 6.66 87.66 0.58 19.42 16 15 O -0.59 -24.43 15.18 -3.02 -0.05 -24.48 16 16 C -0.09 -2.55 1.60 -11.54 -0.02 -2.57 16 17 H 0.11 2.93 7.26 -2.38 -0.02 2.91 16 18 C -0.14 -4.12 8.78 71.98 0.63 -3.49 16 19 C -0.09 -2.18 2.76 -10.14 -0.03 -2.21 16 20 C 0.12 2.52 8.38 86.44 0.72 3.25 16 21 N -0.64 -17.58 3.61 -966.37 -3.49 -21.07 16 22 C 0.67 20.31 8.22 129.79 1.07 21.37 16 23 O -0.60 -21.28 12.61 19.82 0.25 -21.03 16 24 O -0.36 -9.44 9.87 -55.48 -0.55 -9.99 16 25 C 0.12 2.43 1.13 -10.80 -0.01 2.41 16 26 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 27 C -0.13 -1.69 8.85 71.98 0.64 -1.05 16 28 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 29 C 0.14 4.04 7.34 86.49 0.64 4.67 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.03 1.28 6.69 -2.39 -0.02 1.26 16 32 H 0.07 3.46 6.07 -2.38 -0.01 3.45 16 33 H 0.27 12.63 8.31 -92.71 -0.77 11.86 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 2.64 6.48 -2.38 -0.02 2.63 16 36 H 0.06 2.15 7.66 -2.39 -0.02 2.13 16 37 H 0.07 2.37 5.42 -2.38 -0.01 2.36 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 40 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.11 1.92 7.99 -2.38 -0.02 1.91 16 42 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.51 5.88 -2.39 -0.01 1.50 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 50 H 0.09 1.34 8.14 -2.38 -0.02 1.33 16 51 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 53 H 0.09 2.44 8.10 -2.39 -0.02 2.42 16 Total: -1.00 -61.12 411.75 5.07 -56.05 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.89 Total: 26.31 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 8.03 Total: 22.83 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -5.52 Total: -91.32 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.34 Total: -55.50 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -61.12 5.07 -56.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495488702.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.854 kcal (2) G-P(sol) polarization free energy of solvation -61.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds