Wall clock time and date at job start Sat Apr 11 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46992 * 2 1 4 4 C 1.52995 * 109.46784 * 240.00082 * 2 1 3 5 5 N 1.46502 * 109.47526 * 65.00149 * 4 2 1 6 6 C 1.34774 * 120.00282 * 179.97438 * 5 4 2 7 7 O 1.21512 * 119.99880 * 0.02562 * 6 5 4 8 8 O 1.34639 * 120.00104 * 179.97438 * 6 5 4 9 9 C 1.45194 * 117.00109 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46996 * 59.99947 * 9 8 6 11 11 C 1.52998 * 109.47163 * 179.97438 * 9 8 6 12 12 C 1.53005 * 109.47094 * 299.99814 * 9 8 6 13 13 C 1.50697 * 109.46860 * 120.00291 * 2 1 3 14 14 O 1.21291 * 120.00342 * 100.71881 * 13 2 1 15 15 N 1.34783 * 119.99917 * 280.70878 * 13 2 1 16 16 C 1.37090 * 120.00255 * 176.24244 * 15 13 2 17 17 H 1.08002 * 120.00420 * 226.37257 * 16 15 13 18 18 C 1.38952 * 119.99928 * 46.36306 * 16 15 13 19 19 N 1.31416 * 119.99729 * 17.71293 * 18 16 15 20 20 Si 1.86800 * 120.00073 * 197.71495 * 18 16 15 21 21 H 1.48495 * 109.47427 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47177 * 120.00287 * 20 18 16 23 23 H 1.48503 * 109.46843 * 239.99814 * 20 18 16 24 24 C 1.46505 * 119.99909 * 355.97259 * 15 13 2 25 25 C 1.54265 * 110.03159 * 242.64059 * 24 15 13 26 26 C 1.54967 * 104.15873 * 217.13707 * 25 24 15 27 27 C 1.54885 * 102.77825 * 37.88817 * 26 25 24 28 28 C 1.53872 * 110.03295 * 125.41970 * 24 15 13 29 29 H 1.09002 * 109.46708 * 304.35090 * 1 2 3 30 30 H 1.09003 * 109.46737 * 64.34722 * 1 2 3 31 31 H 1.09001 * 109.47121 * 184.34891 * 1 2 3 32 32 H 1.09003 * 109.46783 * 184.99932 * 4 2 1 33 33 H 1.08998 * 109.47641 * 305.00009 * 4 2 1 34 34 H 0.97008 * 119.99920 * 359.97438 * 5 4 2 35 35 H 1.08999 * 109.46796 * 60.00264 * 10 9 8 36 36 H 1.09001 * 109.46587 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.47366 * 299.99851 * 10 9 8 38 38 H 1.09005 * 109.47214 * 60.00143 * 11 9 8 39 39 H 1.09003 * 109.47081 * 179.97438 * 11 9 8 40 40 H 1.08999 * 109.47489 * 300.00263 * 11 9 8 41 41 H 1.08996 * 109.46526 * 60.00455 * 12 9 8 42 42 H 1.09001 * 109.46755 * 179.97438 * 12 9 8 43 43 H 1.08991 * 109.47235 * 300.00108 * 12 9 8 44 44 H 0.97001 * 119.99381 * 184.94845 * 19 18 16 45 45 H 1.09000 * 110.01483 * 4.03620 * 24 15 13 46 46 H 1.09000 * 110.48663 * 335.78322 * 25 24 15 47 47 H 1.09003 * 110.48665 * 98.42692 * 25 24 15 48 48 H 1.09000 * 110.71720 * 279.57318 * 26 25 24 49 49 H 1.08997 * 110.92088 * 156.29824 * 26 25 24 50 50 H 1.09001 * 110.48561 * 203.40582 * 27 26 25 51 51 H 1.09002 * 110.59958 * 80.81600 * 27 26 25 52 52 H 1.08996 * 110.03650 * 238.56655 * 28 24 15 53 53 H 1.09003 * 110.03319 * 0.02562 * 28 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 1.9964 -0.4131 -3.6659 7 8 2.6275 -1.4452 -3.7795 8 8 1.6398 0.2820 -4.7625 9 6 2.0437 -0.2606 -6.0472 10 6 1.4351 -1.6528 -6.2270 11 6 1.5518 0.6590 -7.1667 12 6 3.5696 -0.3601 -6.1018 13 6 2.0323 -0.7105 1.2304 14 8 2.4187 -1.8576 1.1532 15 7 2.0524 -0.0711 2.4168 16 6 2.4363 -0.7405 3.5499 17 1 1.8518 -0.6518 4.4537 18 6 3.5773 -1.5333 3.5355 19 7 4.4709 -1.3815 2.5839 20 14 3.8410 -2.8150 4.8686 21 1 2.6973 -2.7872 5.8152 22 1 3.9376 -4.1611 4.2490 23 1 5.0978 -2.5159 5.6010 24 6 1.6697 1.3410 2.4944 25 6 2.8672 2.1874 2.9735 26 6 2.2285 3.2666 3.8839 27 6 1.1105 2.4812 4.6136 28 6 0.5530 1.5279 3.5364 29 1 -0.3633 0.5799 0.8485 30 1 -0.3633 0.4449 -0.9264 31 1 -0.3633 -1.0247 0.0779 32 1 3.1263 -0.7994 -1.2056 33 1 1.6054 -1.7198 -1.2952 34 1 1.1482 0.8592 -2.3518 35 1 0.3481 -1.5818 -6.1881 36 1 1.7380 -2.0599 -7.1916 37 1 1.7851 -2.3082 -5.4295 38 1 1.9851 1.6510 -7.0389 39 1 1.8555 0.2518 -8.1312 40 1 0.4648 0.7295 -7.1277 41 1 3.9196 -1.0155 -5.3043 42 1 3.8728 -0.7679 -7.0661 43 1 4.0032 0.6316 -5.9737 44 1 5.2310 -1.9819 2.5322 45 1 1.3321 1.6902 1.5187 46 1 3.5653 1.5732 3.5422 47 1 3.3698 2.6518 2.1250 48 1 1.8061 4.0745 3.2864 49 1 2.9561 3.6549 4.5966 50 1 0.3322 3.1603 4.9617 51 1 1.5224 1.9143 5.4485 52 1 -0.3261 1.9687 3.0665 53 1 0.2961 0.5681 3.9846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495617540.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:32 Heat of formation + Delta-G solvation = -143.107882 kcal Electronic energy + Delta-G solvation = -31658.431698 eV Core-core repulsion = 27529.263816 eV Total energy + Delta-G solvation = -4129.167882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84539 -40.85116 -38.81648 -38.19541 -36.59328 -35.22237 -34.99513 -33.81169 -32.69641 -29.39969 -28.38515 -28.35834 -28.26876 -27.66931 -26.92981 -24.23464 -22.83625 -21.46003 -21.34011 -21.13645 -20.47281 -19.30642 -18.23752 -17.70272 -17.48200 -17.31933 -16.87209 -16.25799 -16.04528 -15.88759 -15.71468 -15.41614 -15.31370 -15.05945 -14.72336 -14.40686 -14.28708 -14.01892 -13.77457 -13.31752 -13.28436 -13.16394 -13.05128 -12.89265 -12.85294 -12.84339 -12.68937 -12.50356 -12.46923 -12.31722 -12.20804 -12.16861 -12.06053 -11.99168 -11.76149 -11.72140 -11.38525 -11.30189 -11.20325 -11.14451 -10.67526 -10.28003 -9.91858 -9.00099 -8.11579 -5.93051 1.10038 1.36547 1.43336 1.50206 1.74965 2.31824 2.48987 3.01940 3.28090 3.32778 3.69869 3.77533 3.81430 3.91867 3.93680 3.96621 4.01952 4.07237 4.32491 4.41148 4.51049 4.62224 4.63485 4.68184 4.72492 4.75663 4.77761 4.82410 4.85334 4.88652 4.89712 4.90465 4.93271 4.98277 4.99991 5.12967 5.18509 5.23354 5.24644 5.29925 5.31553 5.35668 5.37815 5.48958 5.57292 5.62936 5.64413 5.73408 6.30666 6.41304 7.13105 7.28160 7.34960 7.78716 8.42231 8.93599 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.002962 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.501291 B = 9451.722893 C =10689.181498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 H 0.107 0.893 4 C 0.179 3.821 5 N -0.691 5.691 6 C 0.645 3.355 7 O -0.598 6.598 8 O -0.362 6.362 9 C 0.123 3.877 10 C -0.181 4.181 11 C -0.132 4.132 12 C -0.182 4.182 13 C 0.472 3.528 14 O -0.590 6.590 15 N -0.455 5.455 16 C -0.335 4.335 17 H 0.078 0.922 18 C 0.023 3.977 19 N -0.868 5.868 20 Si 0.952 3.048 21 H -0.257 1.257 22 H -0.300 1.300 23 H -0.280 1.280 24 C 0.119 3.881 25 C -0.128 4.128 26 C -0.110 4.110 27 C -0.115 4.115 28 C -0.125 4.125 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.420 0.580 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.252 0.748 45 H 0.096 0.904 46 H 0.042 0.958 47 H 0.055 0.945 48 H 0.088 0.912 49 H 0.063 0.937 50 H 0.085 0.915 51 H 0.044 0.956 52 H 0.088 0.912 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 12.642 -13.332 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.128 4.128 3 H 0.125 0.875 4 C 0.055 3.945 5 N -0.352 5.352 6 C 0.398 3.602 7 O -0.489 6.489 8 O -0.277 6.277 9 C 0.087 3.913 10 C -0.238 4.238 11 C -0.189 4.189 12 C -0.240 4.240 13 C 0.260 3.740 14 O -0.472 6.472 15 N -0.175 5.175 16 C -0.463 4.463 17 H 0.096 0.904 18 C -0.183 4.183 19 N -0.504 5.504 20 Si 0.778 3.222 21 H -0.180 1.180 22 H -0.227 1.227 23 H -0.206 1.206 24 C 0.015 3.985 25 C -0.167 4.167 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.164 4.164 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.258 0.742 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.114 0.886 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.106 0.894 49 H 0.082 0.918 50 H 0.104 0.896 51 H 0.063 0.937 52 H 0.106 0.894 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.420 11.555 -13.515 20.122 hybrid contribution 0.882 -1.172 0.886 1.714 sum -8.538 10.384 -12.628 18.444 Atomic orbital electron populations 1.21749 0.90463 1.02517 1.04080 1.21344 0.99444 1.00571 0.91486 0.87510 1.20643 0.98396 0.94103 0.81331 1.44557 1.59525 1.29111 1.02050 1.18231 0.78174 0.81679 0.82111 1.90923 1.44987 1.26394 1.86621 1.86299 1.74273 1.52367 1.14734 1.22461 0.95032 0.95031 0.78813 1.22484 1.01340 0.96040 1.03967 1.21871 1.02639 0.99057 0.95331 1.22492 0.94449 1.02851 1.04168 1.20514 0.81255 0.86734 0.85513 1.90527 1.50071 1.21013 1.85590 1.43534 1.59886 1.08077 1.06046 1.19023 1.06553 1.28990 0.91722 0.90423 1.25928 0.94038 1.00062 0.98265 1.69987 1.10364 1.35118 1.34933 0.85538 0.78295 0.79041 0.79332 1.18039 1.22671 1.20592 1.22132 0.94685 0.82032 0.99607 1.22617 0.97917 0.96928 0.99238 1.22411 0.97468 0.96881 0.98032 1.22253 0.98216 0.97523 0.97237 1.22411 0.97700 0.99565 0.96694 0.90419 0.88949 0.93717 0.94419 0.92810 0.74226 0.91545 0.88907 0.92751 0.91008 0.87883 0.90813 0.92839 0.88846 0.91787 0.93840 0.88586 0.93943 0.92628 0.89371 0.91830 0.89630 0.93677 0.89387 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.89 71.98 0.64 -2.81 16 2 C -0.11 -3.69 1.89 -11.54 -0.02 -3.71 16 3 H 0.11 3.21 6.55 -2.39 -0.02 3.19 16 4 C 0.18 6.71 4.44 86.38 0.38 7.09 16 5 N -0.69 -19.96 5.25 -590.85 -3.10 -23.06 16 6 C 0.64 20.72 8.06 129.79 1.05 21.76 16 7 O -0.60 -23.62 11.88 19.80 0.24 -23.39 16 8 O -0.36 -9.41 9.94 -55.49 -0.55 -9.96 16 9 C 0.12 2.61 1.13 -10.79 -0.01 2.60 16 10 C -0.18 -3.91 8.37 71.98 0.60 -3.31 16 11 C -0.13 -1.71 8.85 71.98 0.64 -1.07 16 12 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 13 C 0.47 22.99 6.21 87.65 0.54 23.53 16 14 O -0.59 -35.43 13.86 -3.06 -0.04 -35.47 16 15 N -0.45 -21.32 2.44 -609.37 -1.49 -22.81 16 16 C -0.33 -17.88 7.51 84.04 0.63 -17.25 16 17 H 0.08 4.04 6.91 -2.91 -0.02 4.02 16 18 C 0.02 1.30 4.41 84.93 0.37 1.67 16 19 N -0.87 -53.15 11.78 21.66 0.26 -52.89 16 20 Si 0.95 46.31 29.59 68.60 2.03 48.34 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 C 0.12 4.17 2.67 45.71 0.12 4.29 16 25 C -0.13 -4.52 6.43 31.70 0.20 -4.32 16 26 C -0.11 -2.85 6.91 31.91 0.22 -2.62 16 27 C -0.11 -3.02 6.83 31.67 0.22 -2.80 16 28 C -0.13 -3.72 6.20 31.32 0.19 -3.52 16 29 H 0.08 1.85 7.12 -2.39 -0.02 1.83 16 30 H 0.09 1.74 7.09 -2.39 -0.02 1.72 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 2.28 8.06 -2.39 -0.02 2.26 16 34 H 0.42 8.85 7.76 -92.70 -0.72 8.13 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.60 5.88 -2.39 -0.01 1.58 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 1.62 5.88 -2.39 -0.01 1.61 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.25 15.28 8.32 -92.71 -0.77 14.51 16 45 H 0.10 2.79 4.85 -2.39 -0.01 2.78 16 46 H 0.04 1.91 7.22 -2.39 -0.02 1.89 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 52 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.05 1.74 6.64 -2.39 -0.02 1.72 16 Total: -1.00 -78.45 407.63 3.90 -74.54 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.18 Total: 28.66 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 6.38 Total: 16.04 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -4.33 Total: -98.76 kcal Atomic # 8 Polarization: -68.46 SS G_CDS: -0.36 Total: -68.82 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -78.45 3.90 -74.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495617540.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.564 kcal (2) G-P(sol) polarization free energy of solvation -78.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds