Wall clock time and date at job start Sat Apr 11 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47340 * 2 1 4 4 C 1.53005 * 109.47140 * 119.99403 * 2 1 3 5 5 N 1.46501 * 109.46922 * 295.00363 * 4 2 1 6 6 C 1.34782 * 119.99351 * 179.97438 * 5 4 2 7 7 O 1.21508 * 120.00306 * 359.97438 * 6 5 4 8 8 O 1.34641 * 119.99271 * 179.97438 * 6 5 4 9 9 C 1.45205 * 116.99710 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47350 * 59.99638 * 9 8 6 11 11 C 1.52994 * 109.47239 * 179.97438 * 9 8 6 12 12 C 1.53006 * 109.46749 * 300.00045 * 9 8 6 13 13 C 1.50694 * 109.47093 * 239.99506 * 2 1 3 14 14 O 1.21290 * 120.00197 * 258.18592 * 13 2 1 15 15 N 1.34775 * 120.00297 * 78.19218 * 13 2 1 16 16 C 1.37094 * 120.00725 * 184.08519 * 15 13 2 17 17 H 1.08001 * 120.00237 * 226.54778 * 16 15 13 18 18 C 1.38953 * 119.99744 * 46.53412 * 16 15 13 19 19 N 1.31414 * 119.99776 * 13.75452 * 18 16 15 20 20 Si 1.86797 * 120.00102 * 193.75372 * 18 16 15 21 21 H 1.48497 * 109.47384 * 59.99989 * 20 18 16 22 22 H 1.48500 * 109.47220 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46979 * 300.00013 * 20 18 16 24 24 C 1.46509 * 119.99589 * 4.08228 * 15 13 2 25 25 C 1.55234 * 110.57892 * 228.56299 * 24 15 13 26 26 C 1.54893 * 102.58509 * 203.34042 * 25 24 15 27 27 C 1.54265 * 104.31383 * 37.93397 * 26 25 24 28 28 C 1.53875 * 106.59577 * 336.31995 * 27 26 25 29 29 H 1.09008 * 109.47099 * 303.95522 * 1 2 3 30 30 H 1.09006 * 109.46791 * 63.95525 * 1 2 3 31 31 H 1.08993 * 109.47569 * 183.95308 * 1 2 3 32 32 H 1.09008 * 109.46833 * 54.99806 * 4 2 1 33 33 H 1.08997 * 109.47295 * 174.99684 * 4 2 1 34 34 H 0.96991 * 120.00474 * 359.97438 * 5 4 2 35 35 H 1.09006 * 109.46859 * 60.00026 * 10 9 8 36 36 H 1.08998 * 109.47389 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.47403 * 300.00710 * 10 9 8 38 38 H 1.09003 * 109.47109 * 60.00332 * 11 9 8 39 39 H 1.09003 * 109.47126 * 179.97438 * 11 9 8 40 40 H 1.08997 * 109.47127 * 299.99918 * 11 9 8 41 41 H 1.08997 * 109.47405 * 60.00504 * 12 9 8 42 42 H 1.09006 * 109.46447 * 179.97438 * 12 9 8 43 43 H 1.08999 * 109.47067 * 299.99799 * 12 9 8 44 44 H 0.96999 * 119.99344 * 179.97438 * 19 18 16 45 45 H 1.08996 * 110.43537 * 351.14516 * 24 15 13 46 46 H 1.08999 * 110.90329 * 85.04936 * 25 24 15 47 47 H 1.09005 * 110.76891 * 321.56677 * 25 24 15 48 48 H 1.09000 * 110.48352 * 279.18250 * 26 25 24 49 49 H 1.09002 * 110.48362 * 156.67277 * 26 25 24 50 50 H 1.08995 * 110.03337 * 95.61067 * 27 26 25 51 51 H 1.09004 * 110.02707 * 216.99514 * 27 26 25 52 52 H 1.09006 * 110.02922 * 119.28837 * 28 27 26 53 53 H 1.08998 * 110.03463 * 240.66729 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6523 0.0356 2.4424 6 6 1.9955 -0.4134 3.6660 7 8 2.6260 -1.4459 3.7797 8 8 1.6397 0.2824 4.7624 9 6 2.0437 -0.2602 6.0473 10 6 3.5694 -0.3609 6.1015 11 6 1.5538 0.6607 7.1666 12 6 1.4340 -1.6519 6.2276 13 6 2.0323 -0.7105 -1.2304 14 8 2.4372 -1.8509 -1.1493 15 7 2.0318 -0.0787 -2.4208 16 6 2.4095 -0.7513 -3.5542 17 1 3.0993 -0.2947 -4.2485 18 6 1.9051 -2.0207 -3.8093 19 7 0.8754 -2.4680 -3.1263 20 14 2.6906 -3.0911 -5.1232 21 1 4.1144 -3.3336 -4.7783 22 1 1.9716 -4.3882 -5.2001 23 1 2.6098 -2.4023 -6.4364 24 6 1.6274 1.3270 -2.5039 25 6 0.5968 1.5318 -3.6465 26 6 0.7566 3.0360 -3.9796 27 6 2.2714 3.2968 -3.8489 28 6 2.8250 2.2102 -2.9105 29 1 -0.3634 0.5740 0.8525 30 1 -0.3633 0.4513 -0.9234 31 1 -0.3634 -1.0251 0.0708 32 1 1.6053 -1.7197 1.2953 33 1 3.1263 -0.7994 1.2057 34 1 1.1488 0.8596 2.3517 35 1 4.0037 0.6306 5.9729 36 1 3.8727 -0.7678 7.0661 37 1 3.9188 -1.0167 5.3040 38 1 0.4669 0.7327 7.1282 39 1 1.8567 0.2531 8.1311 40 1 1.9885 1.6519 7.0379 41 1 1.7835 -2.3078 5.4302 42 1 1.7377 -2.0594 7.1919 43 1 0.3471 -1.5802 6.1890 44 1 0.5231 -3.3540 -3.3047 45 1 1.2130 1.6606 -1.5525 46 1 -0.4146 1.3180 -3.3010 47 1 0.8495 0.9161 -4.5098 48 1 0.2015 3.6456 -3.2666 49 1 0.4209 3.2393 -4.9965 50 1 2.7484 3.2247 -4.8262 51 1 2.4446 4.2843 -3.4210 52 1 3.5709 1.6107 -3.4325 53 1 3.2678 2.6700 -2.0270 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495617541.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:34 Heat of formation + Delta-G solvation = -146.287824 kcal Electronic energy + Delta-G solvation = -31604.883439 eV Core-core repulsion = 27475.577664 eV Total energy + Delta-G solvation = -4129.305775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83504 -40.81458 -38.79285 -38.19590 -36.58646 -35.26703 -35.02035 -33.78269 -32.74170 -29.39709 -28.34793 -28.31313 -28.26179 -27.67674 -27.00651 -24.24149 -22.82768 -21.50998 -21.29531 -21.00734 -20.52236 -19.27759 -18.20428 -17.78149 -17.44116 -17.32552 -16.88543 -16.32858 -16.02559 -15.94689 -15.70110 -15.47748 -15.28470 -14.90102 -14.73585 -14.38702 -14.13292 -14.07266 -13.74485 -13.38240 -13.30966 -13.19874 -13.07439 -12.88569 -12.83827 -12.79089 -12.74548 -12.55392 -12.48973 -12.31691 -12.27961 -12.14157 -12.06287 -11.98593 -11.88626 -11.74441 -11.37643 -11.27733 -11.13746 -11.11884 -10.67740 -10.27405 -9.93593 -8.97569 -8.14883 -5.93126 1.11238 1.37037 1.44810 1.47687 1.75840 2.27873 2.50653 3.02033 3.29590 3.32238 3.69209 3.78282 3.82267 3.92606 3.94890 3.97415 3.98537 4.10266 4.30898 4.39712 4.51981 4.63161 4.63558 4.68030 4.70510 4.75355 4.78648 4.81038 4.84103 4.86270 4.87896 4.90989 4.91135 4.97894 5.00628 5.12367 5.16568 5.23751 5.25335 5.30766 5.32611 5.36826 5.38883 5.49761 5.57927 5.61063 5.61504 5.72197 6.28551 6.41976 7.12336 7.27358 7.35504 7.77462 8.41982 8.93249 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.002944 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.592520 B = 9508.767913 C =10842.283978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 H 0.117 0.883 4 C 0.179 3.821 5 N -0.692 5.692 6 C 0.645 3.355 7 O -0.598 6.598 8 O -0.363 6.363 9 C 0.123 3.877 10 C -0.181 4.181 11 C -0.133 4.133 12 C -0.182 4.182 13 C 0.479 3.521 14 O -0.594 6.594 15 N -0.456 5.456 16 C -0.338 4.338 17 H 0.072 0.928 18 C 0.021 3.979 19 N -0.870 5.870 20 Si 0.959 3.041 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.258 1.258 24 C 0.118 3.882 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.112 4.112 28 C -0.133 4.133 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.419 0.581 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.255 0.745 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.056 0.944 51 H 0.084 0.916 52 H 0.043 0.957 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 14.965 14.517 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.127 4.127 3 H 0.135 0.865 4 C 0.055 3.945 5 N -0.353 5.353 6 C 0.399 3.601 7 O -0.489 6.489 8 O -0.277 6.277 9 C 0.087 3.913 10 C -0.238 4.238 11 C -0.189 4.189 12 C -0.239 4.239 13 C 0.267 3.733 14 O -0.476 6.476 15 N -0.176 5.176 16 C -0.466 4.466 17 H 0.090 0.910 18 C -0.185 4.185 19 N -0.505 5.505 20 Si 0.785 3.215 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.183 1.183 24 C 0.014 3.986 25 C -0.158 4.158 26 C -0.151 4.151 27 C -0.150 4.150 28 C -0.172 4.172 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.257 0.743 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.115 0.885 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.103 0.897 52 H 0.062 0.938 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.096 13.745 14.695 20.230 hybrid contribution 0.278 -1.268 -1.086 1.693 sum -1.818 12.477 13.608 18.552 Atomic orbital electron populations 1.21649 0.91641 1.01832 1.03186 1.21344 0.98767 1.00923 0.91690 0.86491 1.20666 0.98859 0.93836 0.81127 1.44545 1.59613 1.29040 1.02070 1.18215 0.78199 0.81647 0.82070 1.90917 1.45103 1.26227 1.86609 1.86304 1.74334 1.52333 1.14760 1.22459 0.95212 0.94875 0.78790 1.22485 0.94192 1.02966 1.04200 1.21871 1.02576 0.99115 0.95379 1.22491 1.01243 0.96196 1.03991 1.20443 0.81128 0.87031 0.84733 1.90504 1.50578 1.20659 1.85894 1.43419 1.59688 1.09703 1.04807 1.18899 1.26058 1.00404 1.01233 0.90990 1.25954 0.94452 0.99675 0.98392 1.69910 1.21867 1.17610 1.41146 0.85538 0.78157 0.78126 0.79629 1.21074 1.21667 1.18253 1.22372 0.94766 0.82208 0.99273 1.22654 0.97679 0.96875 0.98569 1.22289 0.96358 0.94497 1.01970 1.22022 0.95588 0.98361 0.98983 1.22464 0.97870 0.96900 0.99941 0.88690 0.91996 0.94755 0.93504 0.93031 0.74264 0.91614 0.88913 0.92662 0.91018 0.87891 0.90875 0.92719 0.88883 0.91790 0.93570 0.88464 0.92956 0.93089 0.89809 0.91324 0.92549 0.89695 0.93787 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.69 71.98 0.63 -3.32 16 2 C -0.11 -3.71 1.89 -11.54 -0.02 -3.73 16 3 H 0.12 3.28 6.72 -2.39 -0.02 3.27 16 4 C 0.18 6.54 4.42 86.38 0.38 6.92 16 5 N -0.69 -19.56 5.32 -590.82 -3.14 -22.70 16 6 C 0.65 20.23 8.06 129.79 1.05 21.27 16 7 O -0.60 -22.90 11.88 19.81 0.24 -22.66 16 8 O -0.36 -9.24 9.94 -55.50 -0.55 -9.79 16 9 C 0.12 2.55 1.13 -10.79 -0.01 2.54 16 10 C -0.18 -3.82 8.37 71.98 0.60 -3.22 16 11 C -0.13 -1.68 8.85 71.98 0.64 -1.04 16 12 C -0.18 -3.94 8.37 71.98 0.60 -3.33 16 13 C 0.48 23.51 6.01 87.66 0.53 24.03 16 14 O -0.59 -35.83 14.17 -3.06 -0.04 -35.87 16 15 N -0.46 -21.58 2.52 -606.95 -1.53 -23.11 16 16 C -0.34 -18.17 7.24 84.04 0.61 -17.56 16 17 H 0.07 3.81 7.14 -2.91 -0.02 3.79 16 18 C 0.02 1.18 4.54 84.93 0.39 1.57 16 19 N -0.87 -51.99 11.77 21.66 0.25 -51.73 16 20 Si 0.96 45.98 29.57 68.60 2.03 48.01 16 21 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 C 0.12 4.16 2.54 46.18 0.12 4.28 16 25 C -0.12 -4.09 6.38 32.01 0.20 -3.89 16 26 C -0.11 -2.75 6.82 31.67 0.22 -2.53 16 27 C -0.11 -2.69 6.80 31.32 0.21 -2.47 16 28 C -0.13 -4.08 6.44 31.32 0.20 -3.88 16 29 H 0.09 2.09 7.28 -2.38 -0.02 2.07 16 30 H 0.06 2.00 6.99 -2.38 -0.02 1.98 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 2.04 8.07 -2.38 -0.02 2.02 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.42 8.75 7.78 -92.72 -0.72 8.03 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.58 5.88 -2.39 -0.01 1.57 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.05 1.60 5.88 -2.39 -0.01 1.59 16 42 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 45 H 0.10 2.91 4.88 -2.39 -0.01 2.90 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 47 H 0.05 2.12 6.98 -2.38 -0.02 2.10 16 48 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 52 H 0.04 1.62 6.91 -2.38 -0.02 1.60 16 53 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.96 407.99 3.76 -73.20 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.17 Total: 29.03 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.33 Total: 15.63 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -4.42 Total: -97.54 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: -0.36 Total: -68.32 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.96 3.76 -73.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495617541.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.087 kcal (2) G-P(sol) polarization free energy of solvation -76.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds