Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46599 * 2 1 4 4 C 1.52997 * 109.46838 * 240.00238 * 2 1 3 5 5 C 1.52997 * 109.47290 * 174.99549 * 4 2 1 6 6 C 1.50702 * 109.47261 * 179.97438 * 5 4 2 7 7 O 1.21273 * 120.00113 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99710 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99602 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46602 * 184.79227 * 9 8 6 11 11 C 1.50694 * 115.55031 * 294.81113 * 10 9 8 12 12 H 1.08008 * 119.99906 * 95.20931 * 11 10 9 13 13 C 1.37882 * 120.00284 * 274.93190 * 11 10 9 14 14 N 1.31509 * 119.99919 * 355.42076 * 13 11 10 15 15 Si 1.86800 * 120.00242 * 175.41794 * 13 11 10 16 16 H 1.48502 * 109.47002 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47091 * 119.99801 * 15 13 11 18 18 H 1.48497 * 109.47138 * 240.00628 * 15 13 11 19 19 C 1.53003 * 117.49932 * 80.48439 * 10 9 8 20 20 C 1.52998 * 117.49502 * 149.14583 * 10 9 8 21 21 N 1.46498 * 109.47355 * 120.00418 * 2 1 3 22 22 C 1.34779 * 119.99795 * 274.99776 * 21 2 1 23 23 O 1.21509 * 119.99746 * 0.02562 * 22 21 2 24 24 O 1.34634 * 119.99937 * 179.97438 * 22 21 2 25 25 C 1.45202 * 116.99973 * 180.02562 * 24 22 21 26 26 C 1.52991 * 109.47052 * 60.00371 * 25 24 22 27 27 C 1.53003 * 109.46993 * 180.02562 * 25 24 22 28 28 C 1.53003 * 109.46763 * 300.00182 * 25 24 22 29 29 H 1.09007 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46878 * 299.99361 * 1 2 3 31 31 H 1.08997 * 109.47758 * 59.99971 * 1 2 3 32 32 H 1.09003 * 109.47117 * 54.99895 * 4 2 1 33 33 H 1.09002 * 109.47083 * 294.99850 * 4 2 1 34 34 H 1.09003 * 109.46759 * 60.00126 * 5 4 2 35 35 H 1.08998 * 109.47657 * 300.00517 * 5 4 2 36 36 H 0.97004 * 119.99767 * 359.97438 * 8 6 5 37 37 H 1.08993 * 109.47604 * 64.79661 * 9 8 6 38 38 H 1.09000 * 109.47101 * 304.78675 * 9 8 6 39 39 H 0.97004 * 120.00506 * 184.99920 * 14 13 11 40 40 H 1.08997 * 117.49622 * 214.99831 * 19 10 9 41 41 H 1.09000 * 117.49928 * 0.02562 * 19 10 9 42 42 H 1.08996 * 117.50254 * 359.97148 * 20 10 9 43 43 H 1.09005 * 117.49689 * 144.97447 * 20 10 9 44 44 H 0.96998 * 119.99800 * 94.99620 * 21 2 1 45 45 H 1.09001 * 109.47456 * 59.99897 * 26 25 24 46 46 H 1.09000 * 109.47066 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.47244 * 299.99630 * 26 25 24 48 48 H 1.09003 * 109.47265 * 59.99513 * 27 25 24 49 49 H 1.09000 * 109.46817 * 179.97438 * 27 25 24 50 50 H 1.09001 * 109.46831 * 299.99685 * 27 25 24 51 51 H 1.08993 * 109.47492 * 60.00366 * 28 25 24 52 52 H 1.09004 * 109.46301 * 180.02562 * 28 25 24 53 53 H 1.08999 * 109.47458 * 299.99907 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5647 -0.6132 -1.3139 6 6 4.0671 -1.3241 -2.5441 7 8 3.2827 -1.8636 -3.2954 8 7 5.3880 -1.3603 -2.8092 9 6 5.8763 -2.0510 -4.0054 10 6 7.4063 -2.0470 -4.0077 11 6 8.0526 -0.6914 -4.1330 12 1 8.3620 -0.1567 -3.2471 13 6 8.2540 -0.1362 -5.3789 14 7 7.9655 -0.8261 -6.4607 15 14 8.9367 1.5960 -5.5303 16 1 9.1774 2.1534 -4.1751 17 1 10.2155 1.5599 -6.2844 18 1 7.9605 2.4515 -6.2517 19 6 8.1168 -3.0912 -3.1441 20 6 8.1148 -3.2312 -4.6685 21 7 2.0184 -0.6907 1.1961 22 6 2.1472 -0.0183 2.3571 23 8 1.8578 1.1605 2.4118 24 8 2.5955 -0.6532 3.4565 25 6 2.7085 0.1333 4.6718 26 6 1.3338 0.6884 5.0496 27 6 3.2307 -0.7519 5.8053 28 6 3.6807 1.2920 4.4409 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.9994 -1.0728 -0.4262 35 1 3.8532 0.4370 -1.3575 36 1 6.0153 -0.9285 -2.2084 37 1 5.5104 -1.5390 -4.8954 38 1 5.5156 -3.0796 -4.0037 39 1 8.1744 -0.4650 -7.3364 40 1 9.0516 -2.7977 -2.6666 41 1 7.4942 -3.7813 -2.5747 42 1 7.4910 -4.0133 -5.1011 43 1 9.0482 -3.0297 -5.1941 44 1 2.2491 -1.6318 1.1524 45 1 0.6413 -0.1371 5.2141 46 1 1.4187 1.2791 5.9617 47 1 0.9622 1.3191 4.2420 48 1 4.2102 -1.1471 5.5359 49 1 3.3160 -0.1613 6.7175 50 1 2.5384 -1.5775 5.9699 51 1 3.3090 1.9226 3.6333 52 1 3.7658 1.8820 5.3534 53 1 4.6600 0.8965 4.1717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496149196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -138.284169 kcal Electronic energy + Delta-G solvation = -30165.129110 eV Core-core repulsion = 26036.170400 eV Total energy + Delta-G solvation = -4128.958710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79546 -40.68628 -38.98540 -38.42464 -36.88254 -35.10211 -34.90244 -33.96094 -33.17300 -31.06422 -28.31957 -28.29184 -28.25054 -27.26247 -25.28708 -23.86000 -22.92931 -21.71295 -21.35198 -21.06971 -20.82879 -19.21601 -18.35959 -17.83387 -17.52519 -17.10862 -16.82240 -16.69166 -16.50398 -16.15635 -15.57611 -15.51420 -15.32694 -14.92807 -14.67541 -14.44809 -14.35748 -14.22030 -13.70713 -13.55166 -13.38206 -13.30523 -13.06511 -12.96125 -12.92561 -12.86644 -12.85473 -12.81435 -12.55302 -12.35821 -12.31934 -12.24179 -12.09836 -12.02495 -11.79944 -11.40846 -11.33067 -11.03716 -10.94514 -10.85182 -10.44690 -10.18927 -10.02425 -9.80415 -8.10199 -6.24318 1.23627 1.40263 1.44599 1.53271 1.78387 1.83752 2.38784 2.44547 3.18026 3.21229 3.49045 3.72664 3.79951 3.83310 3.85618 3.99592 4.10389 4.18530 4.27515 4.43684 4.53895 4.55804 4.58367 4.65676 4.65782 4.70529 4.72986 4.74489 4.81183 4.82421 4.88948 4.90938 4.92256 5.00164 5.03852 5.06482 5.16705 5.23349 5.28982 5.31146 5.32768 5.35479 5.47434 5.56790 5.62265 5.65645 5.72314 5.78476 6.36499 6.47381 6.79879 6.85574 7.41435 7.42574 7.45948 8.96907 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.002254 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.350296 B =12418.688368 C =12925.782066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 H 0.085 0.915 4 C -0.101 4.101 5 C -0.130 4.130 6 C 0.500 3.500 7 O -0.596 6.596 8 N -0.703 5.703 9 C 0.179 3.821 10 C 0.003 3.997 11 C -0.503 4.503 12 H 0.064 0.936 13 C 0.023 3.977 14 N -0.908 5.908 15 Si 0.948 3.052 16 H -0.261 1.261 17 H -0.285 1.285 18 H -0.288 1.288 19 C -0.176 4.176 20 C -0.156 4.156 21 N -0.697 5.697 22 C 0.647 3.353 23 O -0.592 6.592 24 O -0.371 6.371 25 C 0.126 3.874 26 C -0.178 4.178 27 C -0.137 4.137 28 C -0.181 4.181 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.410 0.590 37 H 0.024 0.976 38 H 0.038 0.962 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.414 0.586 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.100 0.900 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.088 0.912 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.072 0.893 23.785 26.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.063 3.937 3 H 0.103 0.897 4 C -0.139 4.139 5 C -0.170 4.170 6 C 0.289 3.711 7 O -0.478 6.478 8 N -0.352 5.352 9 C 0.054 3.946 10 C 0.002 3.998 11 C -0.541 4.541 12 H 0.082 0.918 13 C -0.177 4.177 14 N -0.546 5.546 15 Si 0.775 3.225 16 H -0.185 1.185 17 H -0.211 1.211 18 H -0.215 1.215 19 C -0.214 4.214 20 C -0.194 4.194 21 N -0.357 5.357 22 C 0.400 3.600 23 O -0.483 6.483 24 O -0.286 6.286 25 C 0.089 3.911 26 C -0.236 4.236 27 C -0.194 4.194 28 C -0.238 4.238 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.245 0.755 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.251 0.749 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.119 0.881 50 H 0.088 0.912 51 H 0.082 0.918 52 H 0.107 0.893 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.778 1.137 23.160 26.476 hybrid contribution 0.938 0.643 -0.752 1.364 sum -11.840 1.781 22.408 25.406 Atomic orbital electron populations 1.22153 0.94098 1.02952 1.02637 1.20952 0.94610 0.96706 0.81385 0.89720 1.21567 0.93163 1.02303 0.96853 1.21676 0.97757 1.02360 0.95187 1.21384 0.81824 0.79992 0.87946 1.90640 1.56239 1.48837 1.52123 1.45953 1.07489 1.55411 1.26350 1.20530 0.94142 0.93667 0.86255 1.19086 0.89153 0.90638 1.00909 1.20709 1.39716 1.01323 0.92330 0.91803 1.25706 0.95539 1.00604 0.95884 1.70117 1.47434 1.39039 0.97983 0.85653 0.77576 0.80833 0.78459 1.18457 1.21066 1.21483 1.22994 1.02433 1.03288 0.92639 1.22390 1.01965 1.00825 0.94236 1.44921 1.69242 1.14743 1.06796 1.18274 0.76479 0.83666 0.81576 1.90890 1.56249 1.15886 1.85255 1.86318 1.79257 1.44254 1.18765 1.22366 0.96605 0.91379 0.80709 1.22458 0.95626 1.02045 1.03423 1.21889 1.01960 0.99932 0.95617 1.22483 0.98760 0.98389 1.04183 0.91419 0.93112 0.90243 0.89695 0.90232 0.87099 0.87676 0.75451 0.95750 0.94400 0.93234 0.89748 0.89313 0.91316 0.91809 0.74934 0.91953 0.89314 0.91820 0.91396 0.88125 0.91162 0.91794 0.89320 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.48 71.98 0.68 -1.90 16 2 C 0.17 2.93 2.57 44.99 0.12 3.04 16 3 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 4 C -0.10 -1.96 4.04 30.59 0.12 -1.84 16 5 C -0.13 -2.86 5.59 29.85 0.17 -2.69 16 6 C 0.50 16.69 7.83 87.66 0.69 17.37 16 7 O -0.60 -24.54 15.98 -3.01 -0.05 -24.59 16 8 N -0.70 -25.43 5.48 -463.06 -2.54 -27.97 16 9 C 0.18 7.97 5.50 86.38 0.48 8.45 16 10 C 0.00 0.13 1.47 -52.93 -0.08 0.05 16 11 C -0.50 -25.34 8.59 25.60 0.22 -25.12 16 12 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 13 C 0.02 1.22 5.43 84.66 0.46 1.68 16 14 N -0.91 -51.05 12.65 21.45 0.27 -50.78 16 15 Si 0.95 41.95 29.54 68.60 2.03 43.97 16 16 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 19 C -0.18 -6.92 9.96 30.62 0.30 -6.61 16 20 C -0.16 -7.09 9.14 30.62 0.28 -6.81 16 21 N -0.70 -12.10 4.53 -570.14 -2.59 -14.69 16 22 C 0.65 14.08 8.02 129.79 1.04 15.13 16 23 O -0.59 -15.60 11.54 19.81 0.23 -15.37 16 24 O -0.37 -7.42 9.94 -55.44 -0.55 -7.97 16 25 C 0.13 2.04 1.13 -10.79 -0.01 2.03 16 26 C -0.18 -2.79 8.37 71.98 0.60 -2.18 16 27 C -0.14 -1.45 8.85 71.98 0.64 -0.81 16 28 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 33 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.11 1.99 7.75 -2.39 -0.02 1.97 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.41 13.31 8.33 -92.71 -0.77 12.54 16 37 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 39 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 44 H 0.41 5.78 8.71 -92.71 -0.81 4.97 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 1.34 5.88 -2.39 -0.01 1.33 16 48 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 52 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 53 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -66.81 430.18 2.43 -64.38 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.69 Total: 35.68 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.31 Total: -2.65 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -4.85 Total: -93.44 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -0.37 Total: -47.94 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -66.81 2.43 -64.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496149196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.906 kcal (2) G-P(sol) polarization free energy of solvation -66.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds