Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46975 * 2 1 4 4 C 1.52999 * 109.47395 * 239.99199 * 2 1 3 5 5 N 1.46501 * 109.46909 * 65.00447 * 4 2 1 6 6 C 1.34773 * 120.00024 * 179.97438 * 5 4 2 7 7 O 1.21512 * 120.00197 * 0.02562 * 6 5 4 8 8 O 1.34641 * 119.99961 * 179.97438 * 6 5 4 9 9 C 1.45199 * 117.00102 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46758 * 59.99972 * 9 8 6 11 11 C 1.52997 * 109.47230 * 180.02562 * 9 8 6 12 12 C 1.53001 * 109.47284 * 300.00285 * 9 8 6 13 13 C 1.50704 * 109.46767 * 119.99575 * 2 1 3 14 14 O 1.21276 * 119.99862 * 119.99797 * 13 2 1 15 15 N 1.34781 * 120.00113 * 300.00082 * 13 2 1 16 16 C 1.46494 * 120.00187 * 180.02562 * 15 13 2 17 17 H 1.09001 * 110.05522 * 326.41569 * 16 15 13 18 18 C 1.53869 * 110.03514 * 87.83057 * 16 15 13 19 19 C 1.54266 * 106.59800 * 119.28428 * 18 16 15 20 20 C 1.55238 * 104.23333 * 23.61579 * 19 18 16 21 21 H 1.08993 * 110.76342 * 80.31404 * 20 19 18 22 22 C 1.50702 * 110.89800 * 203.79412 * 20 19 18 23 23 H 1.08003 * 119.99932 * 113.21199 * 22 20 19 24 24 C 1.37871 * 119.99624 * 293.21103 * 22 20 19 25 25 N 1.31522 * 119.99963 * 179.97438 * 24 22 20 26 26 Si 1.86803 * 120.00407 * 0.02562 * 24 22 20 27 27 H 1.48499 * 109.47223 * 90.00045 * 26 24 22 28 28 H 1.48499 * 109.46941 * 210.00001 * 26 24 22 29 29 H 1.48495 * 109.46868 * 329.99898 * 26 24 22 30 30 C 1.54266 * 110.03259 * 205.00121 * 16 15 13 31 31 H 1.08998 * 109.46975 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47397 * 300.00498 * 1 2 3 33 33 H 1.08995 * 109.46541 * 60.00678 * 1 2 3 34 34 H 1.08998 * 109.47249 * 184.99966 * 4 2 1 35 35 H 1.09000 * 109.47293 * 305.00619 * 4 2 1 36 36 H 0.97003 * 119.99715 * 359.97438 * 5 4 2 37 37 H 1.09004 * 109.47014 * 60.00449 * 10 9 8 38 38 H 1.09008 * 109.46949 * 179.97438 * 10 9 8 39 39 H 1.09001 * 109.47369 * 299.99821 * 10 9 8 40 40 H 1.08991 * 109.47339 * 60.00055 * 11 9 8 41 41 H 1.08999 * 109.47162 * 180.02562 * 11 9 8 42 42 H 1.08998 * 109.47049 * 299.99752 * 11 9 8 43 43 H 1.09008 * 109.46700 * 59.99695 * 12 9 8 44 44 H 1.08999 * 109.47137 * 179.97438 * 12 9 8 45 45 H 1.08993 * 109.46762 * 300.00200 * 12 9 8 46 46 H 0.97003 * 119.99576 * 0.02562 * 15 13 2 47 47 H 1.08999 * 110.04012 * 238.57075 * 18 16 15 48 48 H 1.09003 * 110.03070 * 0.02562 * 18 16 15 49 49 H 1.09005 * 110.48526 * 142.29451 * 19 18 16 50 50 H 1.09006 * 110.48581 * 264.93644 * 19 18 16 51 51 H 0.96990 * 120.00360 * 180.02562 * 25 24 22 52 52 H 1.09002 * 110.48629 * 335.78326 * 30 16 15 53 53 H 1.08998 * 110.48744 * 98.29230 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6527 0.0351 -2.4423 6 6 1.9967 -0.4134 -3.6658 7 8 2.6279 -1.4455 -3.7792 8 8 1.6402 0.2816 -4.7624 9 6 2.0443 -0.2611 -6.0471 10 6 1.4356 -1.6533 -6.2268 11 6 1.5535 0.6590 -7.1666 12 6 3.5700 -0.3607 -6.1016 13 6 2.0323 -0.7104 1.2306 14 8 2.7295 -1.6964 1.1194 15 7 1.7067 -0.2498 2.4547 16 6 2.1953 -0.9400 3.6509 17 1 2.2600 -2.0119 3.4638 18 6 3.5761 -0.3903 4.0495 19 6 3.4239 0.1974 5.4677 20 6 2.1991 -0.5496 6.0609 21 1 2.4867 -1.5364 6.4233 22 6 1.5571 0.2583 7.1592 23 1 0.5645 0.6617 7.0232 24 6 2.2369 0.4822 8.3376 25 7 1.6768 1.1876 9.2960 26 14 3.9539 -0.2151 8.5725 27 1 4.9577 0.7700 8.0959 28 1 4.1812 -0.4960 10.0129 29 1 4.0876 -1.4735 7.7956 30 6 1.2522 -0.6672 4.8408 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 3.1264 -0.7996 -1.2054 35 1 1.6055 -1.7199 -1.2950 36 1 1.1485 0.8589 -2.3518 37 1 0.3485 -1.5824 -6.1880 38 1 1.7385 -2.0606 -7.1914 39 1 1.7856 -2.3086 -5.4292 40 1 1.9874 1.6506 -7.0385 41 1 1.8564 0.2514 -8.1311 42 1 0.4665 0.7303 -7.1280 43 1 3.9200 -1.0161 -5.3039 44 1 3.8733 -0.7686 -7.0658 45 1 4.0036 0.6310 -5.9735 46 1 1.1487 0.5387 2.5435 47 1 4.3110 -1.1954 4.0559 48 1 3.8825 0.3903 3.3531 49 1 4.3162 -0.0022 6.0611 50 1 3.2295 1.2688 5.4178 51 1 2.1551 1.3455 10.1249 52 1 0.7070 0.2646 4.6896 53 1 0.5580 -1.4967 4.9752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496774827.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -164.776324 kcal Electronic energy + Delta-G solvation = -29916.555945 eV Core-core repulsion = 25786.448449 eV Total energy + Delta-G solvation = -4130.107496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86091 -41.16244 -39.11320 -38.42995 -36.62226 -35.32784 -35.10276 -34.14498 -33.13371 -30.21379 -29.14046 -28.35251 -28.27659 -27.68794 -25.75886 -24.56203 -22.96366 -21.61123 -21.31512 -21.10381 -20.56896 -19.31982 -18.88141 -18.15891 -17.44496 -17.36372 -17.10214 -16.84391 -16.29149 -16.00894 -15.97594 -15.54553 -15.40644 -14.93552 -14.79014 -14.73280 -14.41722 -14.13472 -14.09688 -13.91228 -13.33098 -13.31343 -13.19434 -13.09997 -12.89675 -12.85852 -12.84761 -12.66943 -12.54526 -12.32457 -12.30727 -12.29333 -12.09797 -11.82968 -11.65451 -11.50054 -11.38320 -11.26444 -11.15251 -11.03441 -10.76344 -10.67611 -10.28827 -9.99464 -8.26794 -6.28988 1.07988 1.33846 1.38121 1.47261 1.63065 1.74787 2.23878 2.35923 3.08932 3.17674 3.48426 3.73575 3.76832 3.81161 3.84881 3.92273 3.93819 3.96479 4.11548 4.26564 4.51355 4.62679 4.62915 4.63747 4.66330 4.68646 4.74959 4.78291 4.80854 4.85949 4.86634 4.90154 4.92155 4.96283 4.97608 5.01066 5.09828 5.13955 5.22226 5.25571 5.29462 5.30219 5.36688 5.44247 5.58181 5.63295 5.68078 5.79399 6.34736 6.37957 6.60761 6.77719 7.27023 7.34185 7.36785 8.89470 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.034299 B = 0.001714 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.161284 B =16331.358150 C =16617.099707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.137 0.863 4 C 0.165 3.835 5 N -0.694 5.694 6 C 0.644 3.356 7 O -0.596 6.596 8 O -0.365 6.365 9 C 0.125 3.875 10 C -0.181 4.181 11 C -0.135 4.135 12 C -0.181 4.181 13 C 0.518 3.482 14 O -0.584 6.584 15 N -0.705 5.705 16 C 0.148 3.852 17 H 0.076 0.924 18 C -0.123 4.123 19 C -0.124 4.124 20 C 0.003 3.997 21 H 0.029 0.971 22 C -0.506 4.506 23 H 0.041 0.959 24 C 0.015 3.985 25 N -0.950 5.950 26 Si 0.935 3.065 27 H -0.267 1.267 28 H -0.297 1.297 29 H -0.249 1.249 30 C -0.100 4.100 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.421 0.579 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.415 0.585 47 H 0.060 0.940 48 H 0.072 0.928 49 H 0.038 0.962 50 H 0.060 0.940 51 H 0.264 0.736 52 H 0.073 0.927 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 1.510 -33.470 33.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 H 0.155 0.845 4 C 0.041 3.959 5 N -0.355 5.355 6 C 0.397 3.603 7 O -0.487 6.487 8 O -0.279 6.279 9 C 0.089 3.911 10 C -0.238 4.238 11 C -0.192 4.192 12 C -0.238 4.238 13 C 0.305 3.695 14 O -0.464 6.464 15 N -0.356 5.356 16 C 0.043 3.957 17 H 0.095 0.905 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.016 4.016 21 H 0.047 0.953 22 C -0.544 4.544 23 H 0.059 0.941 24 C -0.182 4.182 25 N -0.590 5.590 26 Si 0.761 3.239 27 H -0.193 1.193 28 H -0.224 1.224 29 H -0.173 1.173 30 C -0.138 4.138 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.259 0.741 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.252 0.748 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.057 0.943 50 H 0.079 0.921 51 H 0.073 0.927 52 H 0.092 0.908 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.320 0.379 -33.521 33.549 hybrid contribution 0.461 0.289 1.135 1.258 sum -0.859 0.668 -32.386 32.405 Atomic orbital electron populations 1.21867 0.90197 1.03264 1.04874 1.21421 0.99659 1.02028 0.89939 0.84504 1.20854 0.99793 0.94239 0.80987 1.44515 1.59708 1.29271 1.02052 1.18263 0.78193 0.81659 0.82155 1.90928 1.44934 1.26214 1.86617 1.86305 1.74252 1.52481 1.14883 1.22412 0.95109 0.94845 0.78773 1.22481 1.01262 0.96014 1.04026 1.21877 1.02587 0.99162 0.95554 1.22484 0.94226 1.02899 1.04233 1.20821 0.79324 0.84003 0.85369 1.90724 1.39899 1.28382 1.87356 1.46084 1.52926 1.32000 1.04605 1.21497 0.93416 0.96641 0.84139 0.90537 1.22486 0.96923 1.00317 0.96474 1.22702 0.98131 1.00327 0.95085 1.20128 0.93156 0.95146 0.93143 0.95267 1.21275 1.02119 1.31921 0.99132 0.94070 1.25774 1.01624 0.95119 0.95666 1.70037 1.39980 1.42007 1.07011 0.85991 0.80917 0.80499 0.76509 1.19289 1.22390 1.17262 1.22420 0.97077 1.01696 0.92632 0.92811 0.89861 0.89130 0.92321 0.92138 0.74133 0.91721 0.89214 0.92276 0.91069 0.88126 0.90993 0.92306 0.89190 0.91817 0.74780 0.92091 0.90937 0.94321 0.92125 0.92733 0.90795 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.96 71.98 0.65 -0.81 16 2 C -0.11 -1.57 2.76 -11.54 -0.03 -1.60 16 3 H 0.14 1.20 8.14 -2.39 -0.02 1.19 16 4 C 0.16 3.18 4.41 86.38 0.38 3.56 16 5 N -0.69 -10.93 5.29 -590.85 -3.12 -14.05 16 6 C 0.64 13.83 8.06 129.79 1.05 14.88 16 7 O -0.60 -16.83 11.88 19.80 0.24 -16.60 16 8 O -0.36 -6.56 9.94 -55.50 -0.55 -7.11 16 9 C 0.12 1.84 1.13 -10.79 -0.01 1.82 16 10 C -0.18 -2.74 8.37 71.98 0.60 -2.13 16 11 C -0.13 -1.09 8.85 71.98 0.64 -0.46 16 12 C -0.18 -2.80 8.37 71.98 0.60 -2.19 16 13 C 0.52 12.21 7.15 87.66 0.63 12.83 16 14 O -0.58 -19.29 15.57 -3.02 -0.05 -19.33 16 15 N -0.70 -16.01 4.88 -439.12 -2.14 -18.15 16 16 C 0.15 4.44 3.25 45.71 0.15 4.59 16 17 H 0.08 2.48 7.57 -2.39 -0.02 2.47 16 18 C -0.12 -3.95 6.59 31.32 0.21 -3.74 16 19 C -0.12 -4.84 5.34 31.79 0.17 -4.67 16 20 C 0.00 0.15 2.28 -10.12 -0.02 0.13 16 21 H 0.03 1.31 7.02 -2.39 -0.02 1.30 16 22 C -0.51 -27.35 9.08 25.60 0.23 -27.11 16 23 H 0.04 2.43 8.01 -2.91 -0.02 2.40 16 24 C 0.02 0.86 5.46 84.65 0.46 1.32 16 25 N -0.95 -58.02 13.96 21.45 0.30 -57.72 16 26 Si 0.93 43.98 24.81 68.60 1.70 45.68 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 29 H -0.25 -10.99 6.45 99.48 0.64 -10.35 16 30 C -0.10 -3.43 5.93 31.67 0.19 -3.24 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.67 7.56 -2.39 -0.02 0.65 16 33 H 0.09 0.53 7.18 -2.39 -0.02 0.51 16 34 H 0.06 1.43 7.95 -2.39 -0.02 1.41 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.42 3.81 7.76 -92.71 -0.72 3.09 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.06 1.28 5.88 -2.39 -0.01 1.27 16 40 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 43 H 0.06 1.29 5.88 -2.38 -0.01 1.28 16 44 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.41 7.08 7.78 -92.71 -0.72 6.36 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.07 2.11 7.92 -2.39 -0.02 2.09 16 49 H 0.04 1.54 5.44 -2.38 -0.01 1.53 16 50 H 0.06 2.41 8.05 -2.38 -0.02 2.39 16 51 H 0.26 15.22 8.31 -92.72 -0.77 14.45 16 52 H 0.07 2.42 7.63 -2.39 -0.02 2.41 16 53 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -74.72 410.64 1.66 -73.06 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.60 Total: 21.04 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.88 Total: -6.82 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -4.97 Total: -89.92 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.36 Total: -43.04 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.70 Total: 45.68 kcal Total: -74.72 1.66 -73.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496774827.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.713 kcal (2) G-P(sol) polarization free energy of solvation -74.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds