Wall clock time and date at job start Sat Apr 11 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47145 * 2 1 4 4 O 1.45196 * 109.46804 * 120.00480 * 2 1 3 5 5 C 1.34226 * 116.99971 * 149.99955 * 4 2 1 6 6 O 1.20826 * 120.00243 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00265 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47490 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47199 * 179.97438 * 8 7 5 10 10 H 1.08995 * 109.47473 * 305.00443 * 9 8 7 11 11 C 1.53004 * 109.46991 * 184.99918 * 9 8 7 12 12 N 1.46506 * 109.46834 * 65.00183 * 9 8 7 13 13 C 1.34772 * 119.99661 * 204.99871 * 12 9 8 14 14 O 1.21584 * 120.00244 * 355.02277 * 13 12 9 15 15 N 1.34779 * 120.00144 * 175.03388 * 13 12 9 16 16 C 1.46922 * 120.63287 * 184.99846 * 15 13 12 17 17 C 1.52766 * 109.00437 * 233.57878 * 16 15 13 18 18 C 1.53037 * 109.38233 * 305.58466 * 17 16 15 19 19 C 1.50706 * 109.44678 * 181.25665 * 18 17 16 20 20 H 1.08001 * 119.99462 * 245.35443 * 19 18 17 21 21 C 1.37877 * 120.00094 * 65.35775 * 19 18 17 22 22 N 1.31515 * 119.99579 * 355.13496 * 21 19 18 23 23 Si 1.86795 * 120.00061 * 175.13225 * 21 19 18 24 24 H 1.48502 * 109.47039 * 94.99859 * 23 21 19 25 25 H 1.48501 * 109.47402 * 215.00064 * 23 21 19 26 26 H 1.48504 * 109.47062 * 335.00305 * 23 21 19 27 27 C 1.53043 * 109.53742 * 61.24178 * 18 17 16 28 28 C 1.46928 * 120.62736 * 5.26564 * 15 13 12 29 29 H 1.09007 * 109.46923 * 300.00113 * 1 2 3 30 30 H 1.08995 * 109.46882 * 59.99356 * 1 2 3 31 31 H 1.08992 * 109.47519 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46530 * 239.99999 * 2 1 3 33 33 H 1.08995 * 109.46983 * 60.00403 * 3 2 1 34 34 H 1.08997 * 109.46766 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47233 * 300.00060 * 3 2 1 36 36 H 1.09004 * 109.47089 * 59.99845 * 7 5 4 37 37 H 1.09001 * 109.47203 * 300.00370 * 7 5 4 38 38 H 1.09004 * 109.46937 * 59.99929 * 8 7 5 39 39 H 1.08998 * 109.46836 * 300.00449 * 8 7 5 40 40 H 1.08999 * 109.46835 * 180.02562 * 11 9 8 41 41 H 1.09000 * 109.46792 * 300.00272 * 11 9 8 42 42 H 1.09001 * 109.46700 * 59.99901 * 11 9 8 43 43 H 0.96996 * 119.99818 * 25.00250 * 12 9 8 44 44 H 1.09004 * 109.58858 * 353.41196 * 16 15 13 45 45 H 1.08995 * 109.58784 * 113.83853 * 16 15 13 46 46 H 1.09002 * 109.56289 * 185.55199 * 17 16 15 47 47 H 1.08998 * 109.38810 * 65.51657 * 17 16 15 48 48 H 1.09005 * 109.46216 * 301.21894 * 18 17 16 49 49 H 0.97009 * 119.99170 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.49157 * 178.68312 * 27 18 17 51 51 H 1.08997 * 109.52351 * 58.60185 * 27 18 17 52 52 H 1.08999 * 109.58868 * 246.16206 * 28 15 13 53 53 H 1.09002 * 109.58531 * 6.44998 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 3.1936 -1.3171 1.0850 6 8 3.8015 -1.2998 0.0410 7 6 3.7599 -2.0490 2.2745 8 6 5.1021 -2.6777 1.8949 9 6 5.6773 -3.4201 3.1027 10 1 5.7408 -2.7392 3.9513 11 6 7.0744 -3.9426 2.7622 12 7 4.8047 -4.5462 3.4445 13 6 4.7897 -5.0293 4.7026 14 8 5.5644 -4.5917 5.5312 15 7 3.9160 -5.9977 5.0423 16 6 3.8121 -6.4578 6.4338 17 6 3.9793 -7.9759 6.4696 18 6 2.9700 -8.6207 5.5170 19 6 3.1129 -10.1198 5.5743 20 1 3.4509 -10.6636 4.7046 21 6 2.8120 -10.7971 6.7370 22 7 2.4928 -10.1284 7.8235 23 14 2.8577 -12.6642 6.7688 24 1 4.1814 -13.1185 7.2655 25 1 1.7908 -13.1703 7.6692 26 1 2.6374 -13.1882 5.3968 27 6 3.2332 -8.1376 4.0888 28 6 3.0535 -6.6175 4.0270 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 3.0668 -2.8316 2.5832 37 1 3.9060 -1.3482 3.0965 38 1 5.7953 -1.8953 1.5859 39 1 4.9555 -3.3785 1.0731 40 1 7.4840 -4.4719 3.6225 41 1 7.0107 -4.6237 1.9135 42 1 7.7236 -3.1047 2.5077 43 1 4.2378 -4.9441 2.7654 44 1 4.5944 -5.9911 7.0324 45 1 2.8343 -6.1911 6.8347 46 1 3.8061 -8.3383 7.4829 47 1 4.9910 -8.2359 6.1582 48 1 1.9595 -8.3406 5.8147 49 1 2.2807 -10.6050 8.6414 50 1 2.5289 -8.6152 3.4077 51 1 4.2517 -8.3956 3.7989 52 1 2.0126 -6.3641 4.2278 53 1 3.3339 -6.2543 3.0383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525928226.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:36 Heat of formation + Delta-G solvation = -155.931649 kcal Electronic energy + Delta-G solvation = -30393.204212 eV Core-core repulsion = 26263.480250 eV Total energy + Delta-G solvation = -4129.723962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68177 -41.33574 -38.85964 -38.07676 -37.10925 -35.34885 -34.23304 -33.58435 -32.68344 -31.77984 -30.70331 -28.20571 -27.91255 -26.38020 -24.82016 -23.98697 -23.03964 -22.17056 -21.51240 -21.36999 -20.41170 -19.14435 -18.67747 -18.31651 -17.67944 -17.20204 -17.14129 -16.52895 -16.32691 -15.89260 -15.50090 -15.18894 -15.02980 -14.91087 -14.68023 -14.56425 -14.43075 -14.14861 -14.05289 -13.85733 -13.50312 -13.36394 -13.17644 -13.13684 -13.04406 -12.85808 -12.82012 -12.70759 -12.48130 -12.45877 -12.21521 -12.15233 -11.90763 -11.89541 -11.81291 -11.58867 -11.39694 -11.38128 -11.24058 -10.91768 -10.77189 -10.39583 -10.15755 -9.34404 -8.07245 -6.19638 1.18835 1.41101 1.43321 1.52633 1.69605 1.75327 2.22105 2.44825 2.99192 3.20186 3.57565 3.75013 3.81879 3.94077 4.02971 4.08735 4.11681 4.16190 4.29296 4.36056 4.43009 4.51214 4.54712 4.60406 4.63141 4.67171 4.74694 4.76348 4.83143 4.84005 4.88231 4.91152 4.93726 5.00024 5.03615 5.13221 5.17788 5.22183 5.22527 5.26307 5.35581 5.48859 5.54058 5.55279 5.65924 5.68526 5.99986 6.11745 6.13388 6.40518 6.74759 6.92304 7.07150 7.48096 7.64378 8.97042 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002139 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.452692 B =13087.746183 C =14038.298543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.361 6.361 5 C 0.465 3.535 6 O -0.536 6.536 7 C -0.112 4.112 8 C -0.102 4.102 9 C 0.164 3.836 10 H 0.078 0.922 11 C -0.161 4.161 12 N -0.731 5.731 13 C 0.704 3.296 14 O -0.636 6.636 15 N -0.622 5.622 16 C 0.140 3.860 17 C -0.109 4.109 18 C 0.046 3.954 19 C -0.532 4.532 20 H 0.051 0.949 21 C 0.012 3.988 22 N -0.915 5.915 23 Si 0.949 3.051 24 H -0.282 1.282 25 H -0.284 1.284 26 H -0.267 1.267 27 C -0.117 4.117 28 C 0.118 3.882 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.406 0.594 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.019 0.981 48 H 0.007 0.993 49 H 0.260 0.740 50 H 0.072 0.928 51 H 0.043 0.957 52 H 0.077 0.923 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 21.816 -16.851 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.224 4.224 4 O -0.278 6.278 5 C 0.310 3.690 6 O -0.425 6.425 7 C -0.150 4.150 8 C -0.140 4.140 9 C 0.059 3.941 10 H 0.097 0.903 11 C -0.219 4.219 12 N -0.390 5.390 13 C 0.406 3.594 14 O -0.518 6.518 15 N -0.359 5.359 16 C 0.016 3.984 17 C -0.148 4.148 18 C 0.027 3.973 19 C -0.570 4.570 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.554 5.554 23 Si 0.775 3.225 24 H -0.209 1.209 25 H -0.209 1.209 26 H -0.192 1.192 27 C -0.155 4.155 28 C -0.004 4.004 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.244 0.756 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.025 0.975 49 H 0.069 0.931 50 H 0.091 0.909 51 H 0.062 0.938 52 H 0.095 0.905 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.284 22.158 -16.423 27.610 hybrid contribution -0.071 -1.580 0.191 1.593 sum -1.355 20.579 -16.231 26.244 Atomic orbital electron populations 1.21914 0.90700 1.03473 1.04291 1.22982 0.96369 0.93016 0.86082 1.22200 1.01128 0.94735 1.04320 1.86592 1.36593 1.62599 1.42061 1.24136 0.78830 0.75812 0.90267 1.90646 1.60038 1.59829 1.32031 1.21492 0.98227 1.00957 0.94302 1.21639 0.95115 1.00453 0.96758 1.20833 0.89262 0.86611 0.97388 0.90337 1.22147 0.96339 1.02209 1.01205 1.45339 1.47607 1.37095 1.08939 1.15994 0.80423 0.79774 0.83238 1.90842 1.44238 1.64953 1.51758 1.47385 1.40329 1.38266 1.09873 1.21297 1.00791 0.95038 0.81245 1.21689 0.97946 0.92524 1.02666 1.18606 0.93791 0.93556 0.91308 1.21578 1.44389 0.93577 0.97445 0.93090 1.25710 0.95159 1.02275 0.95502 1.70010 1.47776 1.36474 1.01142 0.85685 0.77460 0.81259 0.78077 1.20859 1.20919 1.19161 1.21873 1.00651 0.94524 0.98481 1.21793 0.94635 0.92959 0.91013 0.91061 0.88431 0.91919 0.90792 0.90997 0.93447 0.88831 0.86739 0.86306 0.88571 0.89927 0.94612 0.91719 0.89842 0.75566 0.91487 0.92057 0.91570 0.96239 0.97486 0.93101 0.90894 0.93844 0.90522 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.57 71.98 0.69 -0.71 16 2 C 0.07 0.98 3.18 30.60 0.10 1.08 16 3 C -0.17 -1.92 9.55 71.98 0.69 -1.23 16 4 O -0.36 -6.34 9.88 -51.38 -0.51 -6.85 16 5 C 0.46 8.35 7.93 71.24 0.56 8.92 16 6 O -0.54 -12.14 15.20 21.96 0.33 -11.81 16 7 C -0.11 -1.54 5.70 29.85 0.17 -1.37 16 8 C -0.10 -1.42 4.04 30.59 0.12 -1.30 16 9 C 0.16 3.12 2.54 44.99 0.11 3.23 16 10 H 0.08 1.72 7.65 -2.39 -0.02 1.70 16 11 C -0.16 -3.16 9.48 71.98 0.68 -2.47 16 12 N -0.73 -16.45 4.44 -457.81 -2.03 -18.48 16 13 C 0.70 23.11 8.26 179.06 1.48 24.59 16 14 O -0.64 -25.90 15.43 -3.98 -0.06 -25.97 16 15 N -0.62 -21.11 2.98 -837.74 -2.49 -23.60 16 16 C 0.14 5.60 6.41 86.22 0.55 6.15 16 17 C -0.11 -5.17 5.18 30.53 0.16 -5.02 16 18 C 0.05 2.18 2.01 -11.51 -0.02 2.16 16 19 C -0.53 -28.48 8.49 25.60 0.22 -28.27 16 20 H 0.05 2.69 7.75 -2.91 -0.02 2.67 16 21 C 0.01 0.67 5.36 84.65 0.45 1.13 16 22 N -0.91 -51.99 11.53 21.45 0.25 -51.74 16 23 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C -0.12 -4.28 5.30 30.67 0.16 -4.12 16 28 C 0.12 3.35 6.39 86.36 0.55 3.90 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.20 7.16 -2.39 -0.02 1.18 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.11 1.45 7.75 -2.38 -0.02 1.43 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.27 8.10 -2.38 -0.02 1.25 16 39 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 40 H 0.03 0.93 8.10 -2.39 -0.02 0.92 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.41 7.11 6.09 -92.71 -0.56 6.55 16 44 H 0.07 2.81 7.00 -2.38 -0.02 2.79 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.07 3.55 6.29 -2.39 -0.02 3.53 16 47 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 49 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 50 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.10 2.01 5.64 -2.39 -0.01 2.00 16 Total: -1.00 -70.24 419.80 4.51 -65.73 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.31 Total: 20.80 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 6.68 Total: 6.67 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -4.28 Total: -93.83 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.24 Total: -44.62 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -70.24 4.51 -65.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525928226.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.201 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds