Wall clock time and date at job start Sat Apr 11 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47657 * 2 1 4 4 C 1.52999 * 109.47308 * 119.99971 * 2 1 3 5 5 O 1.42904 * 109.46979 * 54.99807 * 4 2 1 6 6 C 1.42902 * 114.00219 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.74645 * 32.01973 * 6 5 4 8 8 C 1.55310 * 110.84829 * 155.71174 * 6 5 4 9 9 C 1.54943 * 100.93807 * 152.32730 * 8 6 5 10 10 O 1.43643 * 105.13720 * 323.55133 * 9 8 6 11 11 C 1.43246 * 109.97091 * 24.43508 * 10 9 8 12 12 N 1.46506 * 109.46939 * 239.99902 * 2 1 3 13 13 C 1.34773 * 120.00020 * 85.00282 * 12 2 1 14 14 O 1.21592 * 120.00115 * 355.02459 * 13 12 2 15 15 N 1.34771 * 119.99908 * 175.02730 * 13 12 2 16 16 C 1.46919 * 120.63284 * 4.94098 * 15 13 12 17 17 C 1.53622 * 108.54645 * 126.37260 * 16 15 13 18 18 C 1.53036 * 109.24360 * 54.85400 * 17 16 15 19 19 C 1.53000 * 109.46451 * 178.49269 * 18 17 16 20 20 C 1.50698 * 109.47089 * 295.07288 * 19 18 17 21 21 H 1.08001 * 119.99902 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99838 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99978 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99985 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46625 * 90.00646 * 24 22 20 26 26 H 1.48506 * 109.47007 * 210.00192 * 24 22 20 27 27 H 1.48498 * 109.47335 * 330.00652 * 24 22 20 28 28 C 1.53040 * 109.54067 * 298.51725 * 18 17 16 29 29 C 1.46929 * 120.63153 * 185.22453 * 15 13 12 30 30 H 1.08995 * 109.47657 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46833 * 300.00090 * 1 2 3 32 32 H 1.09000 * 109.47201 * 59.99798 * 1 2 3 33 33 H 1.08992 * 109.47696 * 174.99468 * 4 2 1 34 34 H 1.09002 * 109.47295 * 295.00448 * 4 2 1 35 35 H 1.09001 * 111.12233 * 270.24024 * 8 6 5 36 36 H 1.08996 * 111.12253 * 34.40479 * 8 6 5 37 37 H 1.09006 * 110.30550 * 204.64331 * 9 8 6 38 38 H 1.09002 * 110.31488 * 82.47336 * 9 8 6 39 39 H 1.09001 * 109.82711 * 238.77562 * 11 10 9 40 40 H 1.08996 * 109.83237 * 117.80017 * 11 10 9 41 41 H 0.97001 * 119.99928 * 264.72447 * 12 2 1 42 42 H 1.09008 * 109.59208 * 246.20519 * 16 15 13 43 43 H 1.09002 * 109.59015 * 6.63202 * 16 15 13 44 44 H 1.09007 * 109.63444 * 294.86614 * 17 16 15 45 45 H 1.08996 * 109.46037 * 174.74434 * 17 16 15 46 46 H 1.09004 * 109.44694 * 58.52974 * 18 17 16 47 47 H 1.09001 * 109.46699 * 55.07147 * 19 18 17 48 48 H 1.09000 * 109.47471 * 175.06790 * 19 18 17 49 49 H 0.96998 * 120.00276 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.49711 * 301.41278 * 28 18 17 51 51 H 1.08995 * 109.52874 * 181.33017 * 28 18 17 52 52 H 1.09009 * 109.58410 * 353.37346 * 29 15 13 53 53 H 1.09001 * 109.58902 * 113.65152 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4702 -2.0304 1.3094 6 6 1.8836 -2.7926 2.4453 7 1 2.0663 -2.1424 3.3009 8 6 0.8344 -3.8847 2.7896 9 6 1.7326 -4.9541 3.4608 10 8 2.9696 -4.9162 2.7316 11 6 3.1359 -3.6332 2.1166 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.7735 1.1361 -2.4358 15 7 2.6898 -0.6256 -3.4309 16 6 3.0465 -2.0501 -3.3846 17 6 2.3730 -2.7612 -4.5682 18 6 2.7657 -2.0573 -5.8691 19 6 2.1278 -2.7843 -7.0547 20 6 2.7035 -4.1729 -7.1613 21 1 3.4501 -4.5036 -6.4544 22 6 2.2780 -5.0206 -8.1619 23 7 2.7800 -6.2326 -8.2546 24 14 0.9873 -4.4482 -9.3850 25 1 1.6558 -3.8127 -10.5488 26 1 0.1916 -5.6139 -9.8469 27 1 0.0886 -3.4630 -8.7316 28 6 2.2747 -0.6082 -5.8355 29 6 2.9419 0.1258 -4.6681 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.1263 -0.7996 1.2056 34 1 1.7516 -0.1583 2.1370 35 1 0.0871 -3.5057 3.4868 36 1 0.3645 -4.2763 1.8875 37 1 1.2743 -5.9396 3.3773 38 1 1.9026 -4.7025 4.5077 39 1 3.2299 -3.7501 1.0370 40 1 4.0247 -3.1443 2.5155 41 1 2.2528 -1.6309 -1.1517 42 1 4.1287 -2.1585 -3.4575 43 1 2.6959 -2.4844 -2.4483 44 1 1.2901 -2.7264 -4.4483 45 1 2.7020 -3.7997 -4.6027 46 1 3.8504 -2.0708 -5.9759 47 1 1.0501 -2.8483 -6.9044 48 1 2.3346 -2.2338 -7.9724 49 1 2.4809 -6.8289 -8.9588 50 1 1.1927 -0.5937 -5.7036 51 1 2.5337 -0.1140 -6.7717 52 1 2.5223 1.1279 -4.5788 53 1 4.0158 0.1935 -4.8422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563807521.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:51 Heat of formation + Delta-G solvation = -149.897349 kcal Electronic energy + Delta-G solvation = -30815.520251 eV Core-core repulsion = 26686.057955 eV Total energy + Delta-G solvation = -4129.462295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.52703 -40.62293 -39.17960 -38.37351 -36.19392 -35.67860 -34.13977 -32.70932 -32.06290 -31.27108 -30.06852 -29.64443 -27.46699 -26.22461 -24.26579 -23.62157 -23.39073 -22.50889 -22.13816 -21.22977 -20.56565 -19.19748 -18.75786 -18.37647 -17.61470 -17.44488 -16.55247 -16.44596 -16.34338 -16.05190 -15.97888 -15.44298 -15.30498 -15.15839 -14.87772 -14.84869 -14.54133 -14.30212 -14.18815 -14.12601 -13.96728 -13.49189 -13.33561 -13.20698 -13.03443 -12.88825 -12.65981 -12.52559 -12.41795 -12.36289 -12.14986 -11.99924 -11.94128 -11.74598 -11.66678 -11.36061 -11.28480 -11.02515 -10.91251 -10.71009 -10.62899 -10.49556 -10.20747 -9.44268 -8.25202 -6.26434 1.35101 1.37364 1.48316 1.67912 2.13282 2.37722 2.43122 2.90984 3.02044 3.10524 3.45362 3.75206 3.88365 3.91029 3.99187 4.01610 4.04400 4.10028 4.20025 4.20536 4.29683 4.39160 4.42068 4.47283 4.50152 4.61379 4.65038 4.71133 4.75723 4.80177 4.81147 4.84410 4.87488 4.93720 4.94356 5.00194 5.07515 5.09604 5.19002 5.24030 5.33961 5.36414 5.42231 5.57716 5.62569 5.73460 5.74900 5.98530 6.00633 6.16770 6.34809 6.80938 6.95812 7.37414 7.56279 8.90976 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010397 B = 0.002677 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.388282 B =10458.565122 C =12353.434786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.093 0.907 4 C 0.056 3.944 5 O -0.380 6.380 6 C 0.060 3.940 7 H 0.103 0.897 8 C -0.150 4.150 9 C 0.045 3.955 10 O -0.408 6.408 11 C 0.022 3.978 12 N -0.732 5.732 13 C 0.704 3.296 14 O -0.632 6.632 15 N -0.626 5.626 16 C 0.121 3.879 17 C -0.114 4.114 18 C -0.068 4.068 19 C -0.008 4.008 20 C -0.514 4.514 21 H 0.043 0.957 22 C 0.004 3.996 23 N -0.951 5.951 24 Si 0.941 3.059 25 H -0.268 1.268 26 H -0.288 1.288 27 H -0.253 1.253 28 C -0.123 4.123 29 C 0.134 3.866 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.405 0.595 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.009 0.991 48 H 0.015 0.985 49 H 0.263 0.737 50 H 0.050 0.950 51 H 0.082 0.918 52 H 0.083 0.917 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 11.609 26.790 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.111 0.889 4 C -0.021 4.021 5 O -0.299 6.299 6 C 0.002 3.998 7 H 0.121 0.879 8 C -0.188 4.188 9 C -0.030 4.030 10 O -0.328 6.328 11 C -0.055 4.055 12 N -0.390 5.390 13 C 0.406 3.594 14 O -0.514 6.514 15 N -0.362 5.362 16 C -0.002 4.002 17 C -0.153 4.153 18 C -0.086 4.086 19 C -0.045 4.045 20 C -0.552 4.552 21 H 0.061 0.939 22 C -0.192 4.192 23 N -0.593 5.593 24 Si 0.766 3.234 25 H -0.193 1.193 26 H -0.214 1.214 27 H -0.177 1.177 28 C -0.161 4.161 29 C 0.012 3.988 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.244 0.756 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.028 0.972 48 H 0.033 0.967 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.101 0.899 52 H 0.101 0.899 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.373 12.056 26.509 29.219 hybrid contribution -0.354 -0.725 -1.003 1.287 sum -2.727 11.331 25.507 28.043 Atomic orbital electron populations 1.22022 0.95026 1.02241 1.01857 1.20984 0.94798 0.96269 0.82190 0.88866 1.22962 0.98028 0.83636 0.97435 1.87969 1.69700 1.26842 1.45379 1.23754 0.93377 0.93379 0.89324 0.87895 1.23311 0.98287 0.94915 1.02239 1.23542 0.83068 1.00393 0.96023 1.88427 1.41293 1.33796 1.69319 1.23760 0.98978 0.84042 0.98677 1.45338 1.71012 1.14293 1.08386 1.15997 0.78156 0.84249 0.81028 1.90847 1.57717 1.18377 1.84432 1.47377 1.65125 1.10968 1.12720 1.21797 1.00370 0.79219 0.98811 1.21844 0.99698 0.99534 0.94185 1.20900 0.99608 0.93539 0.94595 1.19586 0.95676 0.94174 0.95066 1.21458 1.22596 0.98171 1.13019 0.93876 1.25913 0.98641 0.94865 0.99790 1.70054 1.45793 1.08481 1.34928 0.85789 0.79902 0.78153 0.79562 1.19349 1.21371 1.17654 1.21959 0.99964 0.95588 0.98618 1.21471 1.00453 0.95249 0.81667 0.92223 0.89873 0.94735 0.91438 0.88782 0.87242 0.90581 0.88861 0.90133 0.91435 0.90049 0.75635 0.90109 0.89178 0.93311 0.91676 0.91975 0.97220 0.96654 0.92764 0.93092 0.89928 0.89860 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.29 71.98 0.67 -2.18 16 2 C 0.16 2.84 2.94 44.99 0.13 2.97 16 3 H 0.09 1.77 7.65 -2.39 -0.02 1.75 16 4 C 0.06 0.62 5.55 71.98 0.40 1.02 16 5 O -0.38 -5.25 8.93 -148.98 -1.33 -6.58 16 6 C 0.06 0.65 3.45 31.85 0.11 0.76 16 7 H 0.10 0.64 7.89 -2.38 -0.02 0.63 16 8 C -0.15 -1.60 6.89 32.05 0.22 -1.38 16 9 C 0.05 0.54 7.78 72.65 0.56 1.10 16 10 O -0.41 -7.72 11.36 -148.98 -1.69 -9.41 16 11 C 0.02 0.33 7.58 72.45 0.55 0.88 16 12 N -0.73 -16.02 4.97 -457.81 -2.28 -18.30 16 13 C 0.70 20.35 8.26 179.06 1.48 21.83 16 14 O -0.63 -22.31 15.43 -4.00 -0.06 -22.37 16 15 N -0.63 -17.39 2.97 -836.06 -2.48 -19.87 16 16 C 0.12 3.13 6.42 86.51 0.56 3.69 16 17 C -0.11 -3.90 5.21 30.82 0.16 -3.74 16 18 C -0.07 -2.49 2.10 -10.77 -0.02 -2.51 16 19 C -0.01 -0.35 3.52 29.85 0.10 -0.24 16 20 C -0.51 -28.69 8.94 25.60 0.23 -28.46 16 21 H 0.04 2.60 7.30 -2.91 -0.02 2.58 16 22 C 0.00 0.25 5.47 84.66 0.46 0.71 16 23 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 24 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 28 C -0.12 -3.79 5.36 30.67 0.16 -3.63 16 29 C 0.13 3.73 6.44 86.36 0.56 4.28 16 30 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.03 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.58 8.11 -2.39 -0.02 0.56 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.41 7.96 5.87 -92.71 -0.54 7.42 16 42 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.09 1.95 5.64 -2.39 -0.01 1.93 16 44 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.06 2.53 6.91 -2.39 -0.02 2.51 16 46 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 47 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 48 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16 49 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 50 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 51 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.08 2.41 7.00 -2.38 -0.02 2.40 16 53 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.30 410.01 0.96 -72.34 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.28 Total: 21.46 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 6.33 Total: -4.90 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -4.46 Total: -97.13 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -3.08 Total: -38.36 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -73.30 0.96 -72.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563807521.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.553 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds