Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 117.00314 * 2 1 4 4 O 1.20814 * 119.99804 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99573 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46806 * 174.21210 * 5 3 2 7 7 H 1.09006 * 109.47177 * 55.57333 * 6 5 3 8 8 C 1.53003 * 109.47255 * 175.57264 * 6 5 3 9 9 N 1.46902 * 109.47464 * 295.57323 * 6 5 3 10 10 C 1.46896 * 110.99755 * 298.60762 * 9 6 5 11 11 C 1.53240 * 109.33879 * 172.74782 * 10 9 6 12 12 N 1.47070 * 108.52506 * 53.82531 * 11 10 9 13 13 C 1.34776 * 120.88504 * 128.84121 * 12 11 10 14 14 O 1.21289 * 119.99888 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00501 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47284 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47130 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47130 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47018 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00082 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00225 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99760 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47239 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47034 * 120.00539 * 23 21 19 26 26 H 1.48504 * 109.46933 * 240.00342 * 23 21 19 27 27 C 1.47078 * 118.23978 * 308.81609 * 12 11 10 28 28 C 1.46898 * 111.00121 * 174.30509 * 9 6 5 29 29 H 1.09003 * 109.46798 * 59.98983 * 1 2 3 30 30 H 1.08994 * 109.47859 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46681 * 300.00265 * 1 2 3 32 32 H 1.09004 * 109.47326 * 54.21755 * 5 3 2 33 33 H 1.09001 * 109.47543 * 294.21358 * 5 3 2 34 34 H 1.09004 * 109.47113 * 180.02562 * 8 6 5 35 35 H 1.09004 * 109.46695 * 299.99969 * 8 6 5 36 36 H 1.08996 * 109.46951 * 59.99998 * 8 6 5 37 37 H 1.08991 * 109.49792 * 52.78515 * 10 9 6 38 38 H 1.09002 * 109.49214 * 292.70300 * 10 9 6 39 39 H 1.09004 * 109.62848 * 173.53824 * 11 10 9 40 40 H 1.09008 * 109.62377 * 294.11698 * 11 10 9 41 41 H 1.09003 * 109.46834 * 299.99576 * 15 13 12 42 42 H 1.09000 * 109.47334 * 59.99363 * 15 13 12 43 43 H 1.09003 * 109.47137 * 299.99755 * 16 15 13 44 44 H 1.09000 * 109.47156 * 59.99620 * 16 15 13 45 45 H 1.09003 * 109.47211 * 300.00078 * 17 16 15 46 46 H 1.09000 * 109.47111 * 59.99960 * 17 16 15 47 47 H 1.08996 * 109.46931 * 299.99793 * 18 17 16 48 48 H 1.08995 * 109.46900 * 60.00410 * 18 17 16 49 49 H 0.97004 * 119.99945 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.63246 * 170.88979 * 27 12 11 51 51 H 1.08996 * 109.63506 * 291.47752 * 27 12 11 52 52 H 1.08999 * 109.49744 * 67.29498 * 28 9 6 53 53 H 1.09002 * 109.51490 * 307.22318 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2746 0.0006 6 6 4.0008 2.7344 -0.1450 7 1 3.5420 3.3304 0.6440 8 6 5.5239 2.8269 -0.0338 9 7 3.5736 3.2442 -1.4549 10 6 4.1996 2.4843 -2.5451 11 6 3.5940 2.9232 -3.8825 12 7 3.7157 4.3847 -3.9934 13 6 4.2540 4.9528 -5.0906 14 8 4.6464 4.2570 -6.0033 15 6 4.3696 6.4525 -5.1830 16 6 5.0108 6.8333 -6.5190 17 6 5.1275 8.3559 -6.6130 18 6 5.7692 8.7367 -7.9487 19 6 5.8836 10.2365 -8.0416 20 1 5.5340 10.8561 -7.2290 21 6 6.4356 10.8176 -9.1635 22 7 6.8618 10.0631 -10.1527 23 14 6.5780 12.6766 -9.2783 24 1 6.0308 13.2923 -8.0428 25 1 8.0061 13.0553 -9.4290 26 1 5.8110 13.1601 -10.4544 27 6 3.2338 5.2099 -2.8753 28 6 3.8538 4.6810 -1.5775 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9610 0.6934 -0.8328 33 1 3.9510 0.8729 0.9381 34 1 5.8333 3.8670 -0.1371 35 1 5.8408 2.4487 0.9382 36 1 5.9826 2.2309 -0.8227 37 1 4.0199 1.4196 -2.3963 38 1 5.2728 2.6749 -2.5518 39 1 4.1329 2.4477 -4.7021 40 1 2.5421 2.6395 -3.9188 41 1 3.3771 6.8982 -5.1158 42 1 4.9892 6.8203 -4.3651 43 1 6.0033 6.3877 -6.5858 44 1 4.3915 6.4655 -7.3371 45 1 4.1348 8.8013 -6.5464 46 1 5.7465 8.7241 -5.7949 47 1 6.7619 8.2915 -8.0149 48 1 5.1505 8.3686 -8.7670 49 1 7.2498 10.4719 -10.9422 50 1 3.5346 6.2463 -3.0289 51 1 2.1474 5.1461 -2.8147 52 1 4.9317 4.8410 -1.5977 53 1 3.4234 5.2097 -0.7270 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588630018.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -151.851747 kcal Electronic energy + Delta-G solvation = -30038.739828 eV Core-core repulsion = 25909.192784 eV Total energy + Delta-G solvation = -4129.547045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.64031 -41.13241 -39.61015 -37.44503 -36.70018 -36.38602 -34.64967 -32.93415 -32.52156 -31.20550 -29.89544 -28.11272 -27.83284 -27.06551 -25.01877 -24.05156 -23.24290 -22.11370 -21.71801 -20.73502 -19.56544 -18.47802 -18.44562 -18.18861 -17.58042 -17.43665 -17.02944 -16.89531 -16.56247 -16.44782 -15.95386 -15.84669 -15.44163 -14.96593 -14.67830 -14.54215 -14.49178 -14.20667 -14.05374 -13.67208 -13.60117 -13.44544 -13.31806 -13.08612 -12.94896 -12.90606 -12.84640 -12.74399 -12.55594 -12.29264 -12.17313 -12.15084 -12.01795 -11.93390 -11.69906 -11.64495 -11.38903 -11.32907 -11.31973 -11.12145 -10.72730 -10.55691 -9.83215 -9.16909 -8.18632 -6.30837 1.39409 1.40484 1.41495 1.55010 1.59431 1.89437 1.93997 2.41999 2.83722 3.14118 3.52582 3.66697 3.85217 3.87667 3.97331 4.02953 4.11280 4.18170 4.22022 4.27433 4.34118 4.35746 4.38199 4.41556 4.45859 4.54852 4.58039 4.65937 4.68298 4.74342 4.76764 4.78819 4.81251 4.84564 4.87599 4.94309 5.02382 5.07558 5.17610 5.31021 5.32215 5.36201 5.48730 5.55300 5.56788 5.77843 5.87971 6.04762 6.05974 6.25359 6.37679 6.87706 6.92451 7.14671 7.38840 8.93787 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026253 B = 0.001676 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.290252 B =16703.590469 C =16875.719658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.459 3.541 4 O -0.518 6.518 5 C -0.106 4.106 6 C 0.094 3.906 7 H 0.091 0.909 8 C -0.182 4.182 9 N -0.534 5.534 10 C 0.043 3.957 11 C 0.114 3.886 12 N -0.613 5.613 13 C 0.511 3.489 14 O -0.589 6.589 15 C -0.126 4.126 16 C -0.094 4.094 17 C -0.095 4.095 18 C 0.018 3.982 19 C -0.541 4.541 20 H 0.067 0.933 21 C -0.007 4.007 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.257 1.257 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.108 3.892 28 C 0.046 3.954 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.060 0.940 46 H 0.062 0.938 47 H -0.015 1.015 48 H -0.016 1.016 49 H 0.263 0.737 50 H 0.109 0.891 51 H 0.078 0.922 52 H 0.043 0.957 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 -21.713 30.234 38.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.291 6.291 3 C 0.302 3.698 4 O -0.406 6.406 5 C -0.144 4.144 6 C -0.014 4.014 7 H 0.109 0.891 8 C -0.241 4.241 9 N -0.259 5.259 10 C -0.086 4.086 11 C -0.009 4.009 12 N -0.346 5.346 13 C 0.302 3.698 14 O -0.469 6.469 15 C -0.165 4.165 16 C -0.132 4.132 17 C -0.132 4.132 18 C -0.019 4.019 19 C -0.579 4.579 20 H 0.085 0.915 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.794 3.206 24 H -0.181 1.181 25 H -0.204 1.204 26 H -0.205 1.205 27 C -0.015 4.015 28 C -0.082 4.082 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.003 0.997 48 H 0.002 0.998 49 H 0.071 0.929 50 H 0.127 0.873 51 H 0.096 0.904 52 H 0.062 0.938 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.519 -21.838 29.576 38.240 hybrid contribution 0.790 0.826 -0.838 1.417 sum -9.729 -21.012 28.738 36.906 Atomic orbital electron populations 1.23394 0.75538 1.05098 1.02073 1.86495 1.24406 1.33873 1.84336 1.24088 0.92951 0.80911 0.71852 1.90676 1.67696 1.37014 1.45189 1.21673 0.86461 0.98609 1.07636 1.21557 0.94270 0.94128 0.91426 0.89108 1.22414 0.95287 1.02638 1.03724 1.62136 1.58576 1.03193 1.01952 1.22505 0.96614 0.99437 0.90007 1.21655 1.01331 0.80109 0.97782 1.48287 1.60757 1.07628 1.17965 1.21233 0.75801 0.91733 0.81075 1.90676 1.50748 1.65764 1.39719 1.21689 1.04691 0.90364 0.99802 1.21240 0.99838 0.95922 0.96240 1.21442 1.00425 0.93676 0.97685 1.19066 0.94117 0.95276 0.93468 1.21789 1.39742 0.93357 1.03027 0.91523 1.26096 0.95040 1.03889 0.95392 1.70142 1.42431 1.37411 1.07822 0.85325 0.77851 0.78861 0.78535 1.18079 1.20447 1.20502 1.22082 0.99832 0.95463 0.84081 1.22454 0.99106 0.88569 0.98101 0.92744 0.85731 0.92143 0.86555 0.84415 0.92301 0.89897 0.92134 0.88163 0.94032 0.90591 0.91258 0.86669 0.86448 0.93868 0.94023 0.92090 0.91964 0.99657 0.99757 0.92877 0.87293 0.90390 0.93844 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.37 -5.06 10.56 -51.42 -0.54 -5.60 16 3 C 0.46 6.60 7.77 71.24 0.55 7.16 16 4 O -0.52 -10.78 15.20 22.00 0.33 -10.45 16 5 C -0.11 -0.79 5.11 29.85 0.15 -0.64 16 6 C 0.09 0.90 1.91 44.92 0.09 0.99 16 7 H 0.09 1.00 7.80 -2.38 -0.02 0.99 16 8 C -0.18 -1.31 8.50 71.98 0.61 -0.70 16 9 N -0.53 -7.31 3.86 -870.01 -3.36 -10.67 16 10 C 0.04 0.62 4.75 86.38 0.41 1.03 16 11 C 0.11 2.34 6.60 86.35 0.57 2.91 16 12 N -0.61 -13.60 3.01 -817.93 -2.46 -16.06 16 13 C 0.51 15.04 7.71 87.66 0.68 15.72 16 14 O -0.59 -23.00 15.44 -3.06 -0.05 -23.05 16 15 C -0.13 -3.32 4.07 29.85 0.12 -3.20 16 16 C -0.09 -3.52 4.50 30.59 0.14 -3.38 16 17 C -0.09 -3.94 5.15 30.59 0.16 -3.78 16 18 C 0.02 1.00 4.97 29.85 0.15 1.14 16 19 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 20 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 21 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 22 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 23 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 C 0.11 1.67 6.50 86.35 0.56 2.23 16 28 C 0.05 0.60 5.15 86.39 0.45 1.05 16 29 H 0.05 0.64 8.13 -2.39 -0.02 0.62 16 30 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 32 H 0.12 0.64 6.07 -2.39 -0.01 0.63 16 33 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.06 0.53 6.71 -2.39 -0.02 0.51 16 35 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.06 0.49 6.55 -2.39 -0.02 0.47 16 37 H 0.10 1.11 5.91 -2.39 -0.01 1.10 16 38 H 0.04 0.65 6.70 -2.39 -0.02 0.63 16 39 H 0.08 1.86 7.06 -2.39 -0.02 1.84 16 40 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.12 2.50 8.00 -2.39 -0.02 2.48 16 42 H 0.12 2.46 7.66 -2.39 -0.02 2.44 16 43 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 44 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 45 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 47 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 48 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 49 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 50 H 0.11 1.34 6.02 -2.39 -0.01 1.33 16 51 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.04 0.58 6.83 -2.39 -0.02 0.56 16 53 H 0.10 1.10 8.05 -2.39 -0.02 1.08 16 Total: -1.00 -81.62 415.19 3.63 -77.98 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.88 Total: 9.22 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 6.52 Total: -9.36 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -5.54 Total: -85.90 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.26 Total: -39.10 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -81.62 3.63 -77.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588630018.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.867 kcal (2) G-P(sol) polarization free energy of solvation -81.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds