Wall clock time and date at job start Sat Apr 11 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46836 * 2 1 4 4 N 1.46497 * 109.47537 * 119.99922 * 2 1 3 5 5 C 1.34774 * 120.00169 * 275.00836 * 4 2 1 6 6 O 1.21595 * 120.00082 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00445 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00131 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46966 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47122 * 59.99854 * 9 8 7 11 11 C 1.53001 * 109.47151 * 300.00004 * 9 8 7 12 12 C 1.50697 * 109.47229 * 179.97438 * 9 8 7 13 13 H 1.07999 * 119.99855 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00388 * 179.97438 * 12 9 8 15 15 N 1.31521 * 119.99851 * 0.02562 * 14 12 9 16 16 Si 1.86793 * 120.00386 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47131 * 90.00192 * 16 14 12 18 18 H 1.48499 * 109.47297 * 210.00372 * 16 14 12 19 19 H 1.48508 * 109.47198 * 330.00775 * 16 14 12 20 20 C 1.53001 * 109.47416 * 240.00336 * 2 1 3 21 21 H 1.09003 * 112.84640 * 294.96695 * 20 2 1 22 22 C 1.53781 * 113.61789 * 163.66767 * 20 2 1 23 23 C 1.53785 * 87.07946 * 220.01728 * 22 20 2 24 24 H 1.08996 * 113.68415 * 270.86703 * 23 22 20 25 25 C 1.50703 * 113.61529 * 139.97851 * 23 22 20 26 26 O 1.20822 * 119.99846 * 262.50449 * 25 23 22 27 27 O 1.34234 * 119.99869 * 82.49888 * 25 23 22 28 28 C 1.53771 * 113.61576 * 66.16377 * 20 2 1 29 29 C 1.53003 * 113.61684 * 254.53076 * 28 20 2 30 30 C 1.53002 * 113.61650 * 25.35493 * 28 20 2 31 31 H 1.09002 * 109.46883 * 186.31921 * 1 2 3 32 32 H 1.08990 * 109.47169 * 306.32340 * 1 2 3 33 33 H 1.09002 * 109.47002 * 66.32831 * 1 2 3 34 34 H 0.97002 * 120.00110 * 94.99631 * 4 2 1 35 35 H 0.97002 * 119.99834 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.46966 * 59.99602 * 8 7 5 37 37 H 1.08997 * 109.46646 * 299.99382 * 8 7 5 38 38 H 1.09002 * 109.47270 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.46902 * 299.99699 * 10 9 8 40 40 H 1.08997 * 109.47434 * 59.99658 * 10 9 8 41 41 H 1.09003 * 109.46957 * 299.99788 * 11 9 8 42 42 H 1.08992 * 109.47628 * 59.99861 * 11 9 8 43 43 H 1.09005 * 109.46989 * 180.02562 * 11 9 8 44 44 H 0.96996 * 120.00349 * 179.97438 * 15 14 12 45 45 H 1.09009 * 113.60831 * 334.56180 * 22 20 2 46 46 H 1.08991 * 113.61923 * 105.46548 * 22 20 2 47 47 H 0.96691 * 116.99713 * 180.02562 * 27 25 23 48 48 H 1.08992 * 109.46909 * 60.00308 * 29 28 20 49 49 H 1.08996 * 109.47223 * 180.02562 * 29 28 20 50 50 H 1.08998 * 109.47162 * 300.00006 * 29 28 20 51 51 H 1.08996 * 109.47229 * 61.17582 * 30 28 20 52 52 H 1.09004 * 109.47473 * 181.18418 * 30 28 20 53 53 H 1.09000 * 109.46670 * 301.17767 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1616 2.4117 7 7 2.5959 -0.6537 3.4577 8 6 2.7362 0.0773 4.7196 9 6 3.2594 -0.8692 5.8018 10 6 4.6214 -1.4237 5.3794 11 6 2.2740 -2.0247 5.9886 12 6 3.4043 -0.1172 7.0996 13 1 3.1485 0.9309 7.1479 14 6 3.8626 -0.7674 8.2258 15 7 4.1738 -2.0439 8.1672 16 14 4.0416 0.1646 9.8347 17 1 2.7735 0.0752 10.6022 18 1 5.1452 -0.4298 10.6310 19 1 4.3484 1.5894 9.5499 20 6 2.0401 -0.7212 -1.2493 21 1 1.7814 -1.7800 -1.2620 22 6 3.5202 -0.4430 -1.5600 23 6 3.1159 -0.3808 -3.0425 24 1 3.1525 -1.3462 -3.5471 25 6 3.8144 0.7095 -3.8135 26 8 3.2614 1.7675 -3.9990 27 8 5.0511 0.5051 -4.2940 28 6 1.7086 0.0097 -2.5609 29 6 0.5826 -0.6479 -3.3614 30 6 1.5139 1.5176 -2.3901 31 1 -0.3633 -1.0214 0.1131 32 1 -0.3633 0.6087 0.8279 33 1 -0.3633 0.4126 -0.9412 34 1 2.2491 -1.6317 1.1526 35 1 2.8260 -1.5950 3.4143 36 1 1.7658 0.4720 5.0206 37 1 3.4379 0.9007 4.5863 38 1 4.9940 -2.0984 6.1502 39 1 4.5169 -1.9676 4.4405 40 1 5.3234 -0.6006 5.2462 41 1 1.3037 -1.6296 6.2895 42 1 2.1696 -2.5685 5.0498 43 1 2.6466 -2.6988 6.7599 44 1 4.4965 -2.5014 8.9593 45 1 3.8781 0.5077 -1.1648 46 1 4.1805 -1.2769 -1.3221 47 1 5.4584 1.2339 -4.7817 48 1 -0.3268 -0.6668 -2.7610 49 1 0.4045 -0.0781 -4.2733 50 1 0.8684 -1.6673 -3.6204 51 1 2.4348 1.9625 -2.0134 52 1 1.2624 1.9630 -3.3527 53 1 0.7055 1.7016 -1.6824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594528425.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:33 Heat of formation + Delta-G solvation = -134.439180 kcal Electronic energy + Delta-G solvation = -31052.914804 eV Core-core repulsion = 26924.122825 eV Total energy + Delta-G solvation = -4128.791979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.38123 -41.00559 -39.93877 -38.21290 -37.04685 -35.87065 -34.95785 -32.88684 -32.01194 -31.01641 -28.34025 -27.99409 -27.53256 -27.41773 -26.57202 -24.27938 -23.29421 -22.19187 -21.51390 -20.54379 -19.91546 -19.18075 -18.60862 -17.74527 -17.64097 -17.17380 -16.72939 -16.60992 -16.39064 -15.83942 -15.77464 -15.28655 -14.81715 -14.77875 -14.70216 -14.51662 -14.25726 -14.00949 -13.93227 -13.80098 -13.27436 -13.19799 -13.07717 -13.03036 -12.84081 -12.67253 -12.61760 -12.58422 -12.39352 -12.23444 -12.17350 -12.12801 -12.05840 -11.83668 -11.45716 -11.34784 -11.28992 -11.11595 -10.99988 -10.76291 -10.67828 -10.38595 -10.20387 -9.59740 -8.01177 -6.16413 1.23145 1.42888 1.45756 1.53945 1.84755 2.21656 2.29124 2.47266 3.22393 3.25541 3.31245 3.56337 3.66624 3.72306 4.13909 4.26689 4.33083 4.44670 4.46360 4.49231 4.52282 4.56294 4.68583 4.72362 4.74061 4.80661 4.92048 4.96014 4.98762 5.02264 5.08997 5.09154 5.14750 5.15160 5.20230 5.23097 5.26639 5.34673 5.41960 5.48977 5.54631 5.67671 5.68880 5.70177 5.70996 5.75924 6.17551 6.18351 6.24828 6.46033 6.87884 7.05009 7.26680 7.51218 7.73622 8.97740 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.002146 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.898528 B =13044.346162 C =13436.692138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.172 3.828 3 H 0.058 0.942 4 N -0.725 5.725 5 C 0.696 3.304 6 O -0.644 6.644 7 N -0.726 5.726 8 C 0.169 3.831 9 C 0.053 3.947 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.529 4.529 13 H 0.042 0.958 14 C 0.029 3.971 15 N -0.899 5.899 16 Si 0.944 3.056 17 H -0.279 1.279 18 H -0.282 1.282 19 H -0.277 1.277 20 C -0.097 4.097 21 H 0.136 0.864 22 C -0.115 4.115 23 C -0.099 4.099 24 H 0.156 0.844 25 C 0.484 3.516 26 O -0.539 6.539 27 O -0.517 6.517 28 C -0.049 4.049 29 C -0.137 4.137 30 C -0.120 4.120 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.411 0.589 35 H 0.405 0.595 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.260 0.740 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.423 0.577 48 H 0.070 0.930 49 H 0.053 0.947 50 H 0.080 0.920 51 H 0.035 0.965 52 H 0.061 0.939 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -4.770 -27.016 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.067 3.933 3 H 0.076 0.924 4 N -0.382 5.382 5 C 0.396 3.604 6 O -0.527 6.527 7 N -0.382 5.382 8 C 0.045 3.955 9 C 0.052 3.948 10 C -0.177 4.177 11 C -0.177 4.177 12 C -0.567 4.567 13 H 0.060 0.940 14 C -0.171 4.171 15 N -0.537 5.537 16 Si 0.770 3.230 17 H -0.205 1.205 18 H -0.207 1.207 19 H -0.202 1.202 20 C -0.116 4.116 21 H 0.153 0.847 22 C -0.153 4.153 23 C -0.118 4.118 24 H 0.173 0.827 25 C 0.328 3.672 26 O -0.429 6.429 27 O -0.331 6.331 28 C -0.050 4.050 29 C -0.194 4.194 30 C -0.177 4.177 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.247 0.753 35 H 0.242 0.758 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.121 0.879 47 H 0.284 0.716 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.099 0.901 51 H 0.054 0.946 52 H 0.080 0.920 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.431 -3.881 -26.675 27.173 hybrid contribution 0.748 0.828 0.961 1.472 sum -2.682 -3.054 -25.714 26.033 Atomic orbital electron populations 1.22244 0.95068 1.02683 1.01972 1.20748 0.94126 0.95965 0.82451 0.92357 1.44995 1.71359 1.14085 1.07736 1.16240 0.78178 0.84706 0.81308 1.90859 1.59469 1.16818 1.85537 1.45180 1.69976 1.14246 1.08788 1.21066 0.98148 0.94283 0.82043 1.18342 0.92920 0.92370 0.91137 1.21653 0.97651 0.99404 0.98969 1.21658 0.97096 0.99098 0.99866 1.21280 1.44240 0.95967 0.95255 0.93951 1.25427 0.94945 0.95663 1.01035 1.69901 1.44888 1.09431 1.29509 0.85785 0.77655 0.78913 0.80604 1.20491 1.20724 1.20242 1.22926 0.95210 1.01706 0.91717 0.84663 1.22878 0.97584 1.03040 0.91793 1.22837 0.95597 0.97966 0.95404 0.82682 1.23803 0.79276 0.88413 0.75733 1.90749 1.66512 1.29173 1.56482 1.84529 1.31078 1.49817 1.67652 1.21734 0.93179 0.95650 0.94420 1.21827 0.97329 1.00907 0.99346 1.21735 1.00592 0.93753 1.01603 0.90755 0.95250 0.89802 0.75305 0.75772 0.94993 0.95056 0.91899 0.94260 0.96514 0.96498 0.94248 0.91892 0.93018 0.91869 0.87923 0.71619 0.91117 0.92803 0.90075 0.94621 0.92017 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.01 71.98 0.65 -2.52 16 2 C 0.17 3.53 1.69 44.99 0.08 3.61 16 3 H 0.06 1.63 6.32 -2.39 -0.02 1.61 16 4 N -0.73 -16.57 5.08 -457.81 -2.33 -18.89 16 5 C 0.70 23.92 8.53 179.06 1.53 25.45 16 6 O -0.64 -28.49 16.01 -4.02 -0.06 -28.56 16 7 N -0.73 -25.05 4.96 -478.53 -2.37 -27.43 16 8 C 0.17 7.36 4.50 86.38 0.39 7.75 16 9 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 10 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 11 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 12 C -0.53 -28.23 8.01 25.60 0.21 -28.02 16 13 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 14 C 0.03 1.53 5.15 84.65 0.44 1.97 16 15 N -0.90 -47.78 9.35 21.45 0.20 -47.58 16 16 Si 0.94 42.85 29.54 68.60 2.03 44.88 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 C -0.10 -1.19 2.75 -10.27 -0.03 -1.22 16 21 H 0.14 0.88 8.10 -2.39 -0.02 0.86 16 22 C -0.12 -1.55 6.84 31.12 0.21 -1.34 16 23 C -0.10 -1.16 3.76 -11.01 -0.04 -1.20 16 24 H 0.16 0.91 7.96 -2.39 -0.02 0.89 16 25 C 0.48 7.93 7.57 71.24 0.54 8.47 16 26 O -0.54 -12.26 13.46 21.98 0.30 -11.96 16 27 O -0.52 -6.38 13.42 -51.46 -0.69 -7.07 16 28 C -0.05 -0.64 0.67 -51.66 -0.03 -0.67 16 29 C -0.14 -1.25 9.13 71.98 0.66 -0.59 16 30 C -0.12 -2.36 5.98 71.98 0.43 -1.93 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.35 4.90 -2.39 -0.01 1.34 16 34 H 0.41 6.44 8.62 -92.71 -0.80 5.64 16 35 H 0.41 11.76 6.18 -92.71 -0.57 11.19 16 36 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 39 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 43 H 0.06 3.08 6.07 -2.38 -0.01 3.07 16 44 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 45 H 0.06 1.22 7.53 -2.38 -0.02 1.20 16 46 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.42 2.15 9.10 -74.06 -0.67 1.48 16 48 H 0.07 0.61 7.12 -2.39 -0.02 0.59 16 49 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.08 0.41 7.94 -2.39 -0.02 0.39 16 51 H 0.03 0.85 6.22 -2.39 -0.01 0.84 16 52 H 0.06 1.31 7.01 -2.38 -0.02 1.29 16 53 H 0.05 1.09 5.42 -2.39 -0.01 1.08 16 Total: -1.00 -71.38 402.88 2.12 -69.25 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -1.10 Total: 24.50 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 6.15 Total: 2.85 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -4.50 Total: -93.90 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.46 Total: -47.59 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -71.38 2.12 -69.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594528425.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.185 kcal (2) G-P(sol) polarization free energy of solvation -71.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds