Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46667 * 2 1 4 4 O 1.45198 * 109.46944 * 119.99757 * 2 1 3 5 5 C 1.34228 * 117.00098 * 90.00122 * 4 2 1 6 6 O 1.20835 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00260 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47318 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47463 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.46967 * 54.99733 * 9 8 7 11 11 C 1.52996 * 109.47467 * 174.99796 * 9 8 7 12 12 N 1.46496 * 109.47235 * 295.00001 * 9 8 7 13 13 C 1.34776 * 120.00420 * 154.99380 * 12 9 8 14 14 O 1.21583 * 119.99862 * 354.89890 * 13 12 9 15 15 N 1.34778 * 120.00319 * 174.89249 * 13 12 9 16 16 C 1.46932 * 120.62954 * 5.04620 * 15 13 12 17 17 C 1.53187 * 108.77613 * 233.58762 * 16 15 13 18 18 C 1.53037 * 109.31525 * 305.36574 * 17 16 15 19 19 C 1.53041 * 109.53747 * 61.36633 * 18 17 16 20 20 H 1.08998 * 109.49632 * 58.58731 * 19 18 17 21 21 C 1.50699 * 109.49900 * 178.68498 * 19 18 17 22 22 H 1.08001 * 119.99833 * 35.05918 * 21 19 18 23 23 C 1.37881 * 120.00068 * 215.06110 * 21 19 18 24 24 N 1.31518 * 120.00055 * 174.98121 * 23 21 19 25 25 Si 1.86804 * 119.99798 * 354.98233 * 23 21 19 26 26 H 1.48503 * 109.46850 * 94.95157 * 25 23 21 27 27 H 1.48497 * 109.46867 * 214.94722 * 25 23 21 28 28 H 1.48498 * 109.47146 * 334.95204 * 25 23 21 29 29 C 1.46920 * 120.63362 * 184.77274 * 15 13 12 30 30 H 1.08999 * 109.46886 * 300.00193 * 1 2 3 31 31 H 1.08998 * 109.46872 * 60.00021 * 1 2 3 32 32 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46886 * 239.99807 * 2 1 3 34 34 H 1.09009 * 109.46594 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47457 * 299.99621 * 3 2 1 36 36 H 1.08999 * 109.47625 * 60.00259 * 3 2 1 37 37 H 1.09003 * 109.47273 * 299.99769 * 7 5 4 38 38 H 1.08996 * 109.47122 * 60.00255 * 7 5 4 39 39 H 1.09004 * 109.47369 * 300.00230 * 8 7 5 40 40 H 1.09002 * 109.47252 * 59.99377 * 8 7 5 41 41 H 1.09004 * 109.47078 * 60.00005 * 11 9 8 42 42 H 1.08995 * 109.47452 * 179.97438 * 11 9 8 43 43 H 1.09003 * 109.47242 * 300.00310 * 11 9 8 44 44 H 0.97005 * 119.99662 * 334.99899 * 12 9 8 45 45 H 1.09001 * 109.58093 * 353.37864 * 16 15 13 46 46 H 1.09000 * 109.58048 * 113.65410 * 16 15 13 47 47 H 1.09005 * 109.49775 * 65.32034 * 17 16 15 48 48 H 1.09001 * 109.49284 * 185.41659 * 17 16 15 49 49 H 1.08993 * 109.46324 * 181.38560 * 18 17 16 50 50 H 1.09008 * 109.46124 * 301.36385 * 18 17 16 51 51 H 0.96996 * 119.99668 * 179.97438 * 24 23 21 52 52 H 1.08995 * 109.58836 * 246.20085 * 29 15 13 53 53 H 1.09003 * 109.58588 * 6.62753 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2172 -2.0074 1.0852 6 8 1.9974 -2.5750 0.0413 7 6 2.7193 -2.7851 2.2744 8 6 2.8644 -4.2601 1.8949 9 6 3.3748 -5.0495 3.1020 10 1 2.7128 -4.8824 3.9517 11 6 3.4015 -6.5410 2.7619 12 7 4.7278 -4.6019 3.4417 13 6 5.1903 -4.7483 4.6991 14 8 4.4548 -5.1656 5.5726 15 7 6.4682 -4.4322 4.9882 16 6 7.3373 -3.8240 3.9715 17 6 8.6166 -4.6583 3.8534 18 6 9.2629 -4.7920 5.2342 19 6 8.3016 -5.5135 6.1815 20 1 8.0591 -6.4955 5.7753 21 6 8.9514 -5.6734 7.5318 22 1 9.6081 -4.9037 7.9096 23 6 8.7077 -6.8024 8.2848 24 7 9.3499 -6.9889 9.4172 25 14 7.4652 -8.0673 7.6964 26 1 8.1687 -9.1441 6.9543 27 1 6.7612 -8.6509 8.8664 28 1 6.4783 -7.4122 6.8008 29 6 7.0170 -4.6837 6.3276 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.6885 -2.3925 2.5823 38 1 2.0105 -2.6892 3.0968 39 1 1.8955 -4.6531 1.5867 40 1 3.5734 -4.3557 1.0725 41 1 4.0635 -6.7081 1.9122 42 1 3.7656 -7.1033 3.6217 43 1 2.3949 -6.8741 2.5092 44 1 5.2907 -4.2000 2.7615 45 1 6.8211 -3.8085 3.0116 46 1 7.5886 -2.8055 4.2677 47 1 8.3712 -5.6483 3.4691 48 1 9.3109 -4.1652 3.1730 49 1 10.1865 -5.3645 5.1489 50 1 9.4853 -3.8005 5.6287 51 1 9.1781 -7.7830 9.9471 52 1 7.2448 -3.7349 6.8133 53 1 6.2895 -5.2358 6.9228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595598535.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -158.171541 kcal Electronic energy + Delta-G solvation = -30689.708186 eV Core-core repulsion = 26559.887095 eV Total energy + Delta-G solvation = -4129.821091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69737 -41.35898 -38.91259 -38.08942 -37.12025 -35.29944 -34.24216 -33.83211 -32.92736 -32.04850 -30.92273 -28.21327 -27.05905 -26.54931 -25.96091 -23.36543 -23.12491 -22.18093 -21.47538 -21.38421 -20.44554 -19.34222 -18.86238 -18.54211 -17.72101 -17.21616 -17.16995 -16.55502 -16.28734 -15.75198 -15.56042 -15.31254 -15.19487 -15.08788 -14.81261 -14.60932 -14.50176 -14.34701 -14.02616 -13.86820 -13.78270 -13.52362 -13.19571 -13.17292 -13.08093 -13.03314 -12.71621 -12.67800 -12.56415 -12.51394 -12.23082 -12.02077 -11.90560 -11.87451 -11.70948 -11.61301 -11.58619 -11.40785 -11.26049 -11.08930 -10.90086 -10.76505 -10.17933 -9.34623 -8.33926 -6.35108 1.17344 1.24972 1.33410 1.47504 1.67982 1.72591 2.23200 2.29964 2.97787 3.07038 3.55548 3.72842 3.81090 3.92990 3.99344 4.05207 4.05756 4.14894 4.17740 4.19714 4.40620 4.48745 4.50807 4.58459 4.61345 4.66211 4.69096 4.75284 4.78881 4.80622 4.83278 4.84876 4.90053 4.99579 5.00991 5.05070 5.11615 5.14094 5.16918 5.21416 5.26758 5.30175 5.48110 5.53774 5.61043 5.63574 5.68729 5.74590 6.10284 6.31114 6.73457 6.73653 7.09498 7.31146 7.64837 8.82511 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.002347 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.835536 B =11925.495495 C =12620.026716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.361 6.361 5 C 0.466 3.534 6 O -0.535 6.535 7 C -0.112 4.112 8 C -0.099 4.099 9 C 0.161 3.839 10 H 0.074 0.926 11 C -0.161 4.161 12 N -0.729 5.729 13 C 0.698 3.302 14 O -0.641 6.641 15 N -0.629 5.629 16 C 0.111 3.889 17 C -0.128 4.128 18 C -0.101 4.101 19 C 0.006 3.994 20 H 0.021 0.979 21 C -0.507 4.507 22 H 0.044 0.956 23 C 0.021 3.979 24 N -0.942 5.942 25 Si 0.931 3.069 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.260 1.260 29 C 0.142 3.858 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.408 0.592 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.055 0.945 48 H 0.104 0.896 49 H 0.050 0.950 50 H 0.057 0.943 51 H 0.265 0.735 52 H 0.058 0.942 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 14.696 -25.164 32.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 C -0.203 4.203 4 O -0.278 6.278 5 C 0.310 3.690 6 O -0.425 6.425 7 C -0.150 4.150 8 C -0.137 4.137 9 C 0.056 3.944 10 H 0.093 0.907 11 C -0.219 4.219 12 N -0.388 5.388 13 C 0.400 3.600 14 O -0.523 6.523 15 N -0.365 5.365 16 C -0.011 4.011 17 C -0.166 4.166 18 C -0.139 4.139 19 C -0.014 4.014 20 H 0.039 0.961 21 C -0.546 4.546 22 H 0.062 0.938 23 C -0.177 4.177 24 N -0.582 5.582 25 Si 0.757 3.243 26 H -0.194 1.194 27 H -0.217 1.217 28 H -0.184 1.184 29 C 0.019 3.981 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.102 0.898 44 H 0.247 0.753 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.122 0.878 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.075 0.925 52 H 0.076 0.924 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.871 14.151 -24.743 32.625 hybrid contribution -0.068 -0.894 0.406 0.984 sum -15.940 13.257 -24.338 31.971 Atomic orbital electron populations 1.22211 0.93564 1.02402 1.04304 1.22985 0.95348 0.93999 0.86077 1.21913 1.02100 0.92061 1.04269 1.86593 1.76816 1.22341 1.42098 1.24097 0.73385 0.81285 0.90189 1.90649 1.49375 1.70436 1.32008 1.21477 1.04922 0.94287 0.94273 1.21613 1.03872 0.91642 0.96609 1.20824 0.82318 0.93803 0.97472 0.90741 1.22157 1.03364 0.95296 1.01110 1.45274 1.17485 1.67257 1.08812 1.16133 0.82013 0.78388 0.83475 1.90861 1.57716 1.55330 1.48382 1.47630 1.09753 1.64970 1.14170 1.21888 0.90988 0.97111 0.91084 1.21945 0.97079 1.00524 0.97042 1.21448 0.97881 0.99945 0.94609 1.19523 0.92547 0.94910 0.94447 0.96106 1.21231 1.27011 1.04332 1.02018 0.93809 1.25778 0.96993 0.99954 0.94968 1.70022 1.43399 1.29180 1.15586 0.85984 0.80380 0.79821 0.78163 1.19428 1.21686 1.18381 1.21842 0.95387 0.99130 0.81781 0.91074 0.88799 0.93516 0.90681 0.91765 0.88426 0.91135 0.86574 0.86662 0.88728 0.89530 0.91171 0.95302 0.89815 0.75297 0.87806 0.89858 0.92589 0.87806 0.93120 0.92447 0.92549 0.92415 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.55 71.98 0.69 -1.18 16 2 C 0.07 0.93 3.18 30.60 0.10 1.03 16 3 C -0.15 -1.25 9.57 71.98 0.69 -0.56 16 4 O -0.36 -6.09 9.88 -51.40 -0.51 -6.59 16 5 C 0.47 8.07 7.93 71.24 0.56 8.64 16 6 O -0.53 -11.73 15.20 21.94 0.33 -11.39 16 7 C -0.11 -1.52 5.70 29.85 0.17 -1.35 16 8 C -0.10 -1.38 4.04 30.59 0.12 -1.26 16 9 C 0.16 3.20 2.62 44.99 0.12 3.32 16 10 H 0.07 1.80 7.51 -2.38 -0.02 1.78 16 11 C -0.16 -3.32 9.48 71.98 0.68 -2.64 16 12 N -0.73 -16.37 4.44 -457.83 -2.03 -18.41 16 13 C 0.70 23.94 8.26 179.05 1.48 25.42 16 14 O -0.64 -28.62 15.41 -3.98 -0.06 -28.69 16 15 N -0.63 -21.15 2.97 -836.07 -2.48 -23.63 16 16 C 0.11 2.49 6.43 86.36 0.56 3.05 16 17 C -0.13 -3.16 6.08 30.67 0.19 -2.98 16 18 C -0.10 -3.59 5.15 30.62 0.16 -3.43 16 19 C 0.01 0.26 1.79 -11.32 -0.02 0.24 16 20 H 0.02 1.00 5.59 -2.39 -0.01 0.99 16 21 C -0.51 -28.54 8.86 25.60 0.23 -28.31 16 22 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 23 C 0.02 1.25 5.47 84.66 0.46 1.71 16 24 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 25 Si 0.93 47.54 26.64 68.60 1.83 49.36 16 26 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 28 H -0.26 -13.44 6.01 99.48 0.60 -12.85 16 29 C 0.14 6.15 5.53 86.51 0.48 6.63 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.14 7.16 -2.39 -0.02 1.12 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 35 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.12 1.38 7.75 -2.39 -0.02 1.36 16 38 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.27 8.10 -2.39 -0.02 1.25 16 40 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 41 H 0.07 1.24 8.14 -2.38 -0.02 1.23 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.41 6.38 6.06 -92.70 -0.56 5.82 16 45 H 0.10 1.50 5.57 -2.39 -0.01 1.48 16 46 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 48 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 51 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 52 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 53 H 0.04 2.29 5.96 -2.39 -0.01 2.28 16 Total: -1.00 -79.28 416.81 4.25 -75.04 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.21 Total: 14.96 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.66 Total: 8.33 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -4.21 Total: -101.02 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.24 Total: -46.67 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.83 Total: 49.36 kcal Total: -79.28 4.25 -75.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595598535.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.136 kcal (2) G-P(sol) polarization free energy of solvation -79.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds