Wall clock time and date at job start Sat Apr 11 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99690 * 2 1 4 4 C 1.53002 * 109.54191 * 62.15629 * 3 2 1 5 5 H 1.09004 * 109.46939 * 170.54635 * 4 3 2 6 6 C 1.52995 * 109.47517 * 50.54519 * 4 3 2 7 7 N 1.46503 * 109.47169 * 290.53784 * 4 3 2 8 8 C 1.34767 * 120.00253 * 190.97032 * 7 4 3 9 9 O 1.21589 * 120.00319 * 5.01894 * 8 7 4 10 10 N 1.34775 * 120.00151 * 185.01911 * 8 7 4 11 11 C 1.46930 * 120.62963 * 354.44559 * 10 8 7 12 12 C 1.52759 * 109.00765 * 233.58395 * 11 10 8 13 13 C 1.53043 * 109.38500 * 305.58726 * 12 11 10 14 14 C 1.53039 * 109.53836 * 61.23644 * 13 12 11 15 15 H 1.09004 * 109.49416 * 58.59164 * 14 13 12 16 16 C 1.50696 * 109.49826 * 178.68392 * 14 13 12 17 17 H 1.08002 * 120.00445 * 359.84258 * 16 14 13 18 18 C 1.37880 * 120.00038 * 179.84115 * 16 14 13 19 19 N 1.31518 * 119.99925 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00114 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47249 * 90.00063 * 20 18 16 22 22 H 1.48501 * 109.47549 * 209.99927 * 20 18 16 23 23 H 1.48501 * 109.47266 * 330.00039 * 20 18 16 24 24 C 1.46928 * 120.63056 * 174.72270 * 10 8 7 25 25 C 1.53179 * 109.54530 * 182.32932 * 3 2 1 26 26 C 1.53110 * 109.15302 * 63.06437 * 25 3 2 27 27 O 1.42890 * 109.48676 * 57.47945 * 26 25 3 28 28 C 1.42910 * 114.09816 * 298.88439 * 27 26 25 29 29 C 1.53093 * 109.41179 * 61.16118 * 28 27 26 30 30 H 1.08996 * 109.46755 * 171.72602 * 1 2 3 31 31 H 1.09007 * 109.47033 * 291.72215 * 1 2 3 32 32 H 1.09001 * 109.47344 * 51.71953 * 1 2 3 33 33 H 1.09004 * 109.47110 * 300.00010 * 6 4 3 34 34 H 1.09003 * 109.47498 * 59.99848 * 6 4 3 35 35 H 1.08998 * 109.47645 * 180.02562 * 6 4 3 36 36 H 0.97000 * 119.99438 * 10.97664 * 7 4 3 37 37 H 1.09002 * 109.58377 * 353.41597 * 11 10 8 38 38 H 1.09002 * 109.58573 * 113.84285 * 11 10 8 39 39 H 1.09004 * 109.56650 * 185.55117 * 12 11 10 40 40 H 1.08997 * 109.36108 * 65.49382 * 12 11 10 41 41 H 1.09001 * 109.45833 * 301.22465 * 13 12 11 42 42 H 1.08992 * 109.46243 * 181.26089 * 13 12 11 43 43 H 0.97005 * 120.00096 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58896 * 246.15463 * 24 10 8 45 45 H 1.08993 * 109.59091 * 6.43876 * 24 10 8 46 46 H 1.09000 * 109.52491 * 182.88311 * 25 3 2 47 47 H 1.09000 * 109.52085 * 303.07420 * 25 3 2 48 48 H 1.09003 * 109.40446 * 297.49022 * 26 25 3 49 49 H 1.09000 * 109.48037 * 177.50586 * 26 25 3 50 50 H 1.09002 * 109.48057 * 301.18067 * 28 27 26 51 51 H 1.08997 * 109.48975 * 181.14567 * 28 27 26 52 52 H 1.09004 * 109.52056 * 182.48829 * 29 28 27 53 53 H 1.08998 * 109.57369 * 62.32819 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6030 2.0469 1.2750 5 1 2.1760 2.9707 1.3567 6 6 1.8849 1.1627 2.4913 7 7 0.1734 2.3623 1.2211 8 6 -0.3658 3.2029 2.1260 9 8 0.3484 3.7705 2.9298 10 7 -1.6968 3.4146 2.1400 11 6 -2.5582 2.8329 1.1015 12 6 -3.3919 3.9444 0.4666 13 6 -4.1490 4.6999 1.5612 14 6 -3.1490 5.3366 2.5291 15 1 -2.4924 6.0125 1.9812 16 6 -3.8946 6.1071 3.5880 17 1 -4.9740 6.1419 3.5712 18 6 -3.1990 6.7676 4.5783 19 7 -1.8846 6.7257 4.5985 20 14 -4.1231 7.7233 5.8905 21 1 -4.4181 6.8290 7.0388 22 1 -3.2903 8.8629 6.3519 23 1 -5.3959 8.2377 5.3241 24 6 -2.3131 4.2363 3.1905 25 6 3.5362 1.1871 -0.0587 26 6 3.9378 0.5164 -1.3752 27 8 3.4248 1.2747 -2.4723 28 6 1.9996 1.3774 -2.4948 29 6 1.5202 2.0846 -1.2245 30 1 -0.3633 -1.0170 -0.1479 31 1 -0.3633 0.3804 0.9548 32 1 -0.3634 0.6366 -0.8067 33 1 1.3120 0.2390 2.4095 34 1 2.9486 0.9281 2.5314 35 1 1.5944 1.6907 3.3995 36 1 -0.3851 1.9659 0.5341 37 1 -1.9411 2.3594 0.3379 38 1 -3.2214 2.0928 1.5492 39 1 -4.1042 3.5109 -0.2355 40 1 -2.7330 4.6335 -0.0618 41 1 -4.7892 4.0055 2.1054 42 1 -4.7617 5.4789 1.1076 43 1 -1.3951 7.1901 5.2954 44 1 -2.9560 3.6129 3.8120 45 1 -1.5346 4.6863 3.8064 46 1 3.9810 2.1809 -0.0070 47 1 3.8874 0.5858 0.7799 48 1 3.5275 -0.4929 -1.4073 49 1 5.0247 0.4695 -1.4425 50 1 1.5639 0.3793 -2.5417 51 1 1.6900 1.9506 -3.3687 52 1 0.4309 2.1246 -1.2188 53 1 1.9221 3.0974 -1.1966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595643418.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:53 Heat of formation + Delta-G solvation = -125.717778 kcal Electronic energy + Delta-G solvation = -32818.138590 eV Core-core repulsion = 28689.724799 eV Total energy + Delta-G solvation = -4128.413791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17240 -40.82279 -38.79630 -38.20023 -35.86701 -35.32026 -33.95015 -33.20891 -32.31846 -31.60745 -30.68954 -27.93461 -27.08445 -26.64760 -25.59550 -24.42065 -23.51203 -22.82431 -21.66377 -21.22576 -20.24278 -19.13616 -18.29428 -17.65983 -17.43155 -16.94908 -16.79192 -16.68905 -16.54450 -16.27356 -16.03398 -15.44140 -15.33388 -15.24756 -15.05153 -14.63444 -14.35507 -14.28243 -14.09811 -13.80601 -13.72731 -13.61473 -13.43668 -13.38265 -12.89200 -12.79203 -12.72695 -12.66823 -12.30779 -12.29413 -12.23667 -12.10065 -11.88411 -11.66660 -11.63979 -11.34349 -11.17139 -10.95708 -10.84883 -10.74216 -10.52512 -10.30962 -10.16207 -9.28861 -8.09849 -6.27558 1.40342 1.40634 1.51642 1.71479 2.21975 2.41608 2.65066 2.93390 2.99216 3.18840 3.40812 3.55731 3.67545 3.93880 3.99010 4.12034 4.18137 4.23601 4.26626 4.29131 4.31140 4.42914 4.45167 4.55093 4.57899 4.59069 4.65539 4.70102 4.77539 4.78650 4.80314 4.81885 4.83729 4.94312 5.02856 5.04108 5.08748 5.17762 5.23628 5.25416 5.26392 5.31384 5.52121 5.56199 5.63253 5.87235 5.95864 6.09773 6.12979 6.26716 6.35431 6.85802 7.07555 7.42474 7.66435 8.92951 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.002949 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.673921 B = 9491.628937 C =10039.757296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.369 6.369 3 C 0.121 3.879 4 C 0.141 3.859 5 H 0.062 0.938 6 C -0.151 4.151 7 N -0.735 5.735 8 C 0.692 3.308 9 O -0.633 6.633 10 N -0.628 5.628 11 C 0.110 3.890 12 C -0.126 4.126 13 C -0.104 4.104 14 C 0.039 3.961 15 H -0.017 1.017 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.914 5.914 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.262 1.262 24 C 0.144 3.856 25 C -0.139 4.139 26 C 0.066 3.934 27 O -0.400 6.400 28 C 0.069 3.931 29 C -0.183 4.183 30 H 0.111 0.889 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.031 0.969 36 H 0.405 0.595 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.258 0.742 44 H 0.034 0.966 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.111 0.889 50 H 0.065 0.935 51 H 0.106 0.894 52 H 0.083 0.917 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 -17.921 -15.708 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.287 6.287 3 C 0.081 3.919 4 C 0.036 3.964 5 H 0.080 0.920 6 C -0.209 4.209 7 N -0.399 5.399 8 C 0.394 3.606 9 O -0.514 6.514 10 N -0.364 5.364 11 C -0.012 4.012 12 C -0.165 4.165 13 C -0.142 4.142 14 C 0.019 3.981 15 H 0.001 0.999 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.552 5.552 20 Si 0.783 3.217 21 H -0.200 1.200 22 H -0.215 1.215 23 H -0.186 1.186 24 C 0.021 3.979 25 C -0.177 4.177 26 C -0.011 4.011 27 O -0.319 6.319 28 C -0.008 4.008 29 C -0.220 4.220 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.248 0.752 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.129 0.871 50 H 0.083 0.917 51 H 0.124 0.876 52 H 0.101 0.899 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.828 -17.556 -15.177 24.191 hybrid contribution -0.913 1.198 1.313 1.998 sum 5.916 -16.358 -13.865 22.244 Atomic orbital electron populations 1.23397 0.81069 1.04877 1.00678 1.87954 1.20223 1.25908 1.94655 1.21668 0.95345 0.83392 0.91504 1.21410 0.80471 0.98012 0.96533 0.91954 1.22030 1.02961 0.99316 0.96638 1.45872 1.10395 1.49835 1.33816 1.16248 0.82471 0.79929 0.81966 1.90889 1.60965 1.54766 1.44788 1.47685 1.04611 1.53779 1.30286 1.21765 0.93622 0.96116 0.89744 1.21847 0.99227 0.97434 0.97942 1.21496 0.97629 0.98810 0.96252 1.18906 0.93144 0.92209 0.93815 0.99859 1.21521 0.93370 1.31217 1.11316 0.91906 1.25913 0.95502 0.97383 1.00269 1.70117 1.07288 1.43496 1.34340 0.85567 0.78677 0.78162 0.79322 1.20018 1.21472 1.18644 1.21565 0.96873 0.90641 0.88804 1.22241 0.91059 1.03631 1.00804 1.22628 1.00202 0.94207 0.84028 1.87906 1.21492 1.74512 1.48014 1.22562 0.80917 1.00439 0.96872 1.22791 1.02465 1.00713 0.96078 0.87052 0.93636 0.92146 0.91374 0.89801 0.95013 0.75154 0.89218 0.89872 0.87416 0.93359 0.92232 0.92960 0.93260 0.94735 0.90709 0.89639 0.88437 0.91879 0.87076 0.91715 0.87629 0.89851 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 8.89 113.37 1.01 0.95 16 2 O -0.37 -6.51 8.37 -148.98 -1.25 -7.76 16 3 C 0.12 2.33 0.37 -10.67 0.00 2.32 16 4 C 0.14 3.76 1.75 44.99 0.08 3.84 16 5 H 0.06 1.99 7.93 -2.38 -0.02 1.97 16 6 C -0.15 -4.05 8.78 71.98 0.63 -3.41 16 7 N -0.73 -21.40 3.41 -457.82 -1.56 -22.96 16 8 C 0.69 28.78 8.01 179.06 1.43 30.21 16 9 O -0.63 -33.55 14.78 -3.99 -0.06 -33.61 16 10 N -0.63 -25.25 2.98 -837.74 -2.50 -27.75 16 11 C 0.11 3.01 6.36 86.22 0.55 3.56 16 12 C -0.13 -3.59 6.06 30.53 0.19 -3.41 16 13 C -0.10 -3.95 5.11 30.62 0.16 -3.80 16 14 C 0.04 1.96 2.25 -11.46 -0.03 1.94 16 15 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 16 C -0.54 -29.67 8.56 25.60 0.22 -29.46 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 18 C 0.01 0.50 5.30 84.65 0.45 0.95 16 19 N -0.91 -56.53 11.39 21.45 0.24 -56.29 16 20 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 24 C 0.14 7.28 5.41 86.36 0.47 7.75 16 25 C -0.14 -2.32 4.90 30.69 0.15 -2.17 16 26 C 0.07 0.98 6.69 72.02 0.48 1.47 16 27 O -0.40 -7.52 10.77 -148.98 -1.60 -9.13 16 28 C 0.07 1.06 6.70 72.01 0.48 1.54 16 29 C -0.18 -3.27 4.28 30.68 0.13 -3.14 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 0.82 5.19 -2.38 -0.01 0.81 16 32 H 0.06 0.68 5.52 -2.39 -0.01 0.67 16 33 H 0.07 1.68 6.74 -2.38 -0.02 1.66 16 34 H 0.08 1.82 6.81 -2.39 -0.02 1.81 16 35 H 0.03 1.09 7.19 -2.39 -0.02 1.07 16 36 H 0.40 9.09 1.60 -92.71 -0.15 8.94 16 37 H 0.09 1.79 5.65 -2.39 -0.01 1.78 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 44 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.07 4.57 5.12 -2.39 -0.01 4.56 16 46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.10 1.43 6.89 -2.39 -0.02 1.42 16 48 H 0.06 0.91 7.82 -2.39 -0.02 0.89 16 49 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.06 0.89 7.82 -2.39 -0.02 0.87 16 51 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.08 1.34 5.09 -2.39 -0.01 1.33 16 53 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -76.73 385.10 2.46 -74.27 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.76 Total: 27.35 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.39 Total: 9.14 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -3.81 Total: -106.99 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -2.91 Total: -50.49 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -76.73 2.46 -74.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595643418.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.448 kcal (2) G-P(sol) polarization free energy of solvation -76.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds