Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00067 * 2 1 4 4 C 1.53002 * 109.54505 * 60.47316 * 3 2 1 5 5 H 1.08993 * 109.47301 * 169.39671 * 4 3 2 6 6 C 1.53002 * 109.46970 * 49.39833 * 4 3 2 7 7 N 1.46501 * 109.46862 * 289.40179 * 4 3 2 8 8 C 1.34776 * 119.99534 * 199.94706 * 7 4 3 9 9 O 1.21588 * 120.00788 * 4.60892 * 8 7 4 10 10 N 1.34776 * 119.99850 * 184.61414 * 8 7 4 11 11 C 1.46925 * 120.62872 * 355.08840 * 10 8 7 12 12 C 1.53193 * 108.77674 * 126.39720 * 11 10 8 13 13 C 1.53034 * 109.31589 * 54.63201 * 12 11 10 14 14 C 1.53042 * 109.54012 * 298.63800 * 13 12 11 15 15 H 1.08999 * 109.49751 * 301.38673 * 14 13 12 16 16 C 1.50701 * 109.50014 * 181.31484 * 14 13 12 17 17 H 1.07995 * 119.99831 * 0.06114 * 16 14 13 18 18 C 1.37874 * 119.99917 * 180.34475 * 16 14 13 19 19 N 1.31516 * 120.00254 * 359.71806 * 18 16 14 20 20 Si 1.86795 * 119.99952 * 179.72508 * 18 16 14 21 21 H 1.48502 * 109.47308 * 59.99658 * 20 18 16 22 22 H 1.48506 * 109.47365 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47310 * 299.99712 * 20 18 16 24 24 C 1.46937 * 120.60708 * 175.07062 * 10 8 7 25 25 C 1.53179 * 109.54312 * 180.64836 * 3 2 1 26 26 C 1.53106 * 109.15525 * 63.06848 * 25 3 2 27 27 O 1.42894 * 109.49149 * 57.47137 * 26 25 3 28 28 C 1.42904 * 114.09783 * 298.89196 * 27 26 25 29 29 C 1.53090 * 109.41681 * 61.15647 * 28 27 26 30 30 H 1.09000 * 109.47108 * 170.23714 * 1 2 3 31 31 H 1.08994 * 109.47529 * 290.23611 * 1 2 3 32 32 H 1.08999 * 109.46792 * 50.24094 * 1 2 3 33 33 H 1.09002 * 109.46895 * 180.02562 * 6 4 3 34 34 H 1.09005 * 109.47121 * 300.00359 * 6 4 3 35 35 H 1.08997 * 109.47114 * 60.00315 * 6 4 3 36 36 H 0.96996 * 120.00299 * 19.94336 * 7 4 3 37 37 H 1.09004 * 109.58968 * 6.60403 * 11 10 8 38 38 H 1.09008 * 109.70714 * 246.25101 * 11 10 8 39 39 H 1.09005 * 109.49145 * 294.68135 * 12 11 10 40 40 H 1.09000 * 109.49754 * 174.59109 * 12 11 10 41 41 H 1.09002 * 109.46294 * 178.61766 * 13 12 11 42 42 H 1.09003 * 109.44670 * 58.65242 * 13 12 11 43 43 H 0.96999 * 120.00520 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.55718 * 113.80267 * 24 10 8 45 45 H 1.08995 * 109.61163 * 353.38010 * 24 10 8 46 46 H 1.09010 * 109.51884 * 182.88142 * 25 3 2 47 47 H 1.09000 * 109.52629 * 303.06962 * 25 3 2 48 48 H 1.08998 * 109.40081 * 297.48280 * 26 25 3 49 49 H 1.09001 * 109.48100 * 177.50658 * 26 25 3 50 50 H 1.08998 * 109.47980 * 301.17474 * 28 27 26 51 51 H 1.08995 * 109.48179 * 181.13868 * 28 27 26 52 52 H 1.08999 * 109.52612 * 182.48932 * 29 28 27 53 53 H 1.09001 * 109.52590 * 62.29696 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5692 2.0620 1.2546 5 1 2.1541 2.9766 1.3517 6 6 1.7916 1.1814 2.4858 7 7 0.1479 2.4004 1.1465 8 6 -0.3694 3.3869 1.9051 9 8 0.3582 4.0517 2.6171 10 7 -1.6935 3.6365 1.8746 11 6 -2.5699 2.9154 0.9415 12 6 -3.7174 2.2805 1.7335 13 6 -4.4257 3.3615 2.5530 14 6 -3.4386 3.9807 3.5452 15 1 -3.0433 3.2028 4.1985 16 6 -4.1452 5.0225 4.3738 17 1 -5.1937 5.2225 4.2102 18 6 -3.4514 5.7242 5.3368 19 7 -2.1745 5.4806 5.5360 20 14 -4.3253 7.0209 6.3586 21 1 -5.4417 6.3909 7.1083 22 1 -3.3655 7.6259 7.3168 23 1 -4.8637 8.0765 5.4636 24 6 -2.2876 4.6348 2.7744 25 6 3.5373 1.1864 -0.0163 26 6 3.9739 0.5002 -1.3135 27 8 3.4905 1.2452 -2.4330 28 6 2.0665 1.3475 -2.4949 29 6 1.5534 2.0697 -1.2464 30 1 -0.3633 -1.0128 -0.1743 31 1 -0.3634 0.3554 0.9642 32 1 -0.3633 0.6573 -0.7900 33 1 1.4771 1.7202 3.3796 34 1 1.2067 0.2666 2.3887 35 1 2.8491 0.9296 2.5663 36 1 -0.4207 1.9144 0.5289 37 1 -2.0011 2.1362 0.4340 38 1 -2.9746 3.6104 0.2057 39 1 -3.3189 1.5185 2.4035 40 1 -4.4267 1.8238 1.0433 41 1 -5.2580 2.9167 3.0985 42 1 -4.8021 4.1356 1.8842 43 1 -1.6865 5.9740 6.2137 44 1 -2.6685 5.4721 2.1897 45 1 -1.5329 4.9898 3.4762 46 1 3.9807 2.1809 0.0353 47 1 3.8658 0.5953 0.8385 48 1 3.5645 -0.5095 -1.3446 49 1 5.0622 0.4525 -1.3511 50 1 1.6321 0.3489 -2.5415 51 1 1.7808 1.9102 -3.3835 52 1 0.4644 2.1097 -1.2703 53 1 1.9555 3.0825 -1.2203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595643421.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -125.385237 kcal Electronic energy + Delta-G solvation = -32842.046241 eV Core-core repulsion = 28713.646871 eV Total energy + Delta-G solvation = -4128.399371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17359 -40.82015 -38.78976 -38.21962 -35.87509 -35.31877 -33.93950 -33.21795 -32.30477 -31.59980 -30.70905 -27.98489 -27.08290 -26.63379 -25.58928 -24.42480 -23.51374 -22.82564 -21.71462 -21.24762 -20.20865 -19.15717 -18.26911 -17.65224 -17.44967 -16.94816 -16.73873 -16.70218 -16.52311 -16.29620 -16.04640 -15.43635 -15.41791 -15.23930 -15.11834 -14.49554 -14.37427 -14.30257 -14.11361 -13.82816 -13.69256 -13.59303 -13.52555 -13.36024 -12.86026 -12.79120 -12.75708 -12.69398 -12.31496 -12.28321 -12.24591 -12.10079 -11.88896 -11.66029 -11.61494 -11.33730 -11.20019 -10.96709 -10.86282 -10.74220 -10.51666 -10.33400 -10.18758 -9.30080 -8.10480 -6.27844 1.40423 1.41862 1.50300 1.70178 2.22790 2.41526 2.64058 2.93210 2.98711 3.18690 3.41324 3.57462 3.68416 3.93435 3.99802 4.10956 4.18065 4.20730 4.26018 4.28790 4.31037 4.39901 4.45094 4.54246 4.57850 4.58853 4.66008 4.69515 4.76628 4.78444 4.79356 4.80827 4.82546 4.93292 5.03336 5.04726 5.08847 5.17845 5.22533 5.24859 5.25974 5.31664 5.51638 5.55620 5.61866 5.86531 5.94948 6.08619 6.13086 6.27005 6.34985 6.85046 7.06701 7.42151 7.64934 8.92360 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.002941 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.039575 B = 9518.124286 C =10094.118268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.369 6.369 3 C 0.120 3.880 4 C 0.139 3.861 5 H 0.069 0.931 6 C -0.152 4.152 7 N -0.736 5.736 8 C 0.692 3.308 9 O -0.636 6.636 10 N -0.627 5.627 11 C 0.109 3.891 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.040 3.960 15 H -0.015 1.015 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.914 5.914 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.144 3.856 25 C -0.140 4.140 26 C 0.066 3.934 27 O -0.400 6.400 28 C 0.068 3.932 29 C -0.179 4.179 30 H 0.113 0.887 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.405 0.595 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.259 0.741 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.111 0.889 50 H 0.064 0.936 51 H 0.106 0.894 52 H 0.083 0.917 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 -14.267 -18.507 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.287 6.287 3 C 0.080 3.920 4 C 0.034 3.966 5 H 0.088 0.912 6 C -0.211 4.211 7 N -0.400 5.400 8 C 0.394 3.606 9 O -0.517 6.517 10 N -0.363 5.363 11 C -0.013 4.013 12 C -0.163 4.163 13 C -0.142 4.142 14 C 0.020 3.980 15 H 0.003 0.997 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.553 5.553 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.192 1.192 24 C 0.022 3.978 25 C -0.177 4.177 26 C -0.010 4.010 27 O -0.319 6.319 28 C -0.008 4.008 29 C -0.217 4.217 30 H 0.131 0.869 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.129 0.871 50 H 0.082 0.918 51 H 0.124 0.876 52 H 0.102 0.898 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.673 -13.834 -18.037 23.991 hybrid contribution -0.965 1.112 1.398 2.030 sum 6.709 -12.722 -16.639 21.993 Atomic orbital electron populations 1.23372 0.81169 1.04954 1.00442 1.87956 1.20093 1.26039 1.94656 1.21702 0.95238 0.83314 0.91766 1.21428 0.80878 0.98102 0.96192 0.91235 1.22068 1.03166 0.99438 0.96402 1.45915 1.11081 1.37741 1.45301 1.16268 0.82544 0.81002 0.80776 1.90874 1.59961 1.53793 1.47098 1.47682 1.04922 1.42948 1.40771 1.21859 0.91967 0.96038 0.91479 1.21914 0.97575 0.97596 0.99257 1.21499 0.97757 0.97572 0.97401 1.18901 0.92305 0.94140 0.92612 0.99732 1.21497 0.96445 1.21134 1.18446 0.91891 1.25904 0.95416 0.99325 0.98376 1.70092 1.09212 1.42242 1.33744 0.85623 0.78206 0.79382 0.78531 1.19279 1.21603 1.19180 1.21580 0.97395 0.88512 0.90358 1.22244 0.90988 1.03587 1.00923 1.22622 1.00417 0.94323 0.83684 1.87902 1.21834 1.75235 1.46947 1.22567 0.80831 1.00339 0.97089 1.22756 1.02510 1.00651 0.95822 0.86853 0.93925 0.92043 0.95585 0.91342 0.89668 0.75024 0.89201 0.89991 0.93131 0.87454 0.92867 0.92342 0.93237 0.94929 0.90743 0.89582 0.88532 0.91930 0.87077 0.91794 0.87599 0.89835 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 8.81 113.37 1.00 0.95 16 2 O -0.37 -6.62 8.39 -148.98 -1.25 -7.87 16 3 C 0.12 2.32 0.37 -10.67 0.00 2.32 16 4 C 0.14 3.76 1.76 44.99 0.08 3.84 16 5 H 0.07 2.22 7.64 -2.39 -0.02 2.20 16 6 C -0.15 -4.22 8.88 71.98 0.64 -3.58 16 7 N -0.74 -21.62 3.44 -457.81 -1.58 -23.19 16 8 C 0.69 28.92 8.18 179.05 1.47 30.39 16 9 O -0.64 -33.70 15.40 -3.99 -0.06 -33.76 16 10 N -0.63 -25.34 2.97 -836.86 -2.49 -27.82 16 11 C 0.11 3.00 6.43 86.36 0.56 3.55 16 12 C -0.13 -3.52 6.08 30.67 0.19 -3.34 16 13 C -0.10 -3.95 5.11 30.62 0.16 -3.79 16 14 C 0.04 2.01 2.25 -11.46 -0.03 1.99 16 15 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 16 C -0.54 -29.66 8.57 25.60 0.22 -29.44 16 17 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 18 C 0.01 0.53 5.30 84.65 0.45 0.97 16 19 N -0.91 -56.38 11.39 21.45 0.24 -56.14 16 20 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C 0.14 7.32 5.38 86.36 0.47 7.78 16 25 C -0.14 -2.33 4.91 30.69 0.15 -2.18 16 26 C 0.07 0.99 6.69 72.02 0.48 1.47 16 27 O -0.40 -7.46 10.77 -148.98 -1.60 -9.06 16 28 C 0.07 1.04 6.69 72.01 0.48 1.53 16 29 C -0.18 -3.18 4.31 30.68 0.13 -3.05 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 0.80 5.11 -2.39 -0.01 0.79 16 32 H 0.06 0.72 5.38 -2.39 -0.01 0.70 16 33 H 0.02 0.92 8.03 -2.39 -0.02 0.90 16 34 H 0.07 1.75 6.46 -2.38 -0.02 1.74 16 35 H 0.08 1.91 6.86 -2.39 -0.02 1.90 16 36 H 0.41 9.20 1.48 -92.71 -0.14 9.06 16 37 H 0.09 1.80 5.56 -2.38 -0.01 1.78 16 38 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 44 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 4.56 5.14 -2.39 -0.01 4.55 16 46 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.10 1.45 6.93 -2.39 -0.02 1.43 16 48 H 0.06 0.91 7.82 -2.39 -0.02 0.89 16 49 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.06 0.88 7.82 -2.39 -0.02 0.86 16 51 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.08 1.33 5.22 -2.39 -0.01 1.32 16 53 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -76.49 386.19 2.49 -73.99 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.77 Total: 27.81 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.43 Total: 9.41 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -3.82 Total: -107.15 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.92 Total: -50.70 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -76.49 2.49 -73.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595643421.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.392 kcal (2) G-P(sol) polarization free energy of solvation -76.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds